zachmullen

r"""
    This module is a VTK Web server application.
    The following command line illustrate how to use it::

        $ vtkpython .../vtk_web_cone.py

    Any VTK Web executable script come with a set of standard arguments that
    can be overriden if need be::

        --port 8080

zachmullen

resp = self.request(
    path='/folder/{}'.format(someFolder['_id']), method='PUT',
    user=self.admin, params={
        'name': 'New name ',
        'description': ' A description '
    })
self.assertStatusOk(resp)
self.assertEqual(resp.json['name'], 'New name')
self.assertEqual(resp.json['description'], 'A description')

zachmullen

    @loadmodel(map={'id': 'folder'}, model='folder', level=AccessType.WRITE)
    def updateFolder(self, folder, params):
        user = self.getCurrentUser()
        folder['name'] = params.get('name', folder['name']).strip()
        folder['description'] = params.get(
            'description', folder['description']).strip()

        folder = self.model('folder').updateFolder(folder)

        if 'parentType' in params and 'parentId' in params:

zachmullen

@loadmodel(map={'id': 'folder'}, model='folder', level=AccessType.WRITE)
    def updateFolder(self, folder, params):
        user = self.getCurrentUser()
        folder['name'] = params.get('name', folder['name']).strip()
        folder['description'] = params.get(
            'description', folder['description']).strip()

        folder = self.model('folder').updateFolder(folder)

        if 'parentType' in params and 'parentId' in params:

zachmullen

    @loadmodel(map={'id': 'folder'}, model='folder', level=AccessType.WRITE)
    def updateFolder(self, folder, params):
        user = self.getCurrentUser()
        folder['name'] = params.get('name', folder['name']).strip()
        folder['description'] = params.get(
            'description', folder['description']).strip()

        folder = self.model('folder').updateFolder(folder)

        if 'parentType' in params and 'parentId' in params:

zachmullen

@loadmodel(map={'id': 'folder'}, model='folder', level=AccessType.WRITE)
def updateFolder(self, folder, params):
    user = self.getCurrentUser()
    folder['name'] = params.get('name', folder['name']).strip()
    folder['description'] = params.get(
        'description', folder['description']).strip()

    folder = self.model('folder').updateFolder(folder)

    if 'parentType' in params and 'parentId' in params:

zachmullen

[
  {
    "dataset": "Prostate3T-01-0010_truth.nrrd",
    "metrics": [
      {
        "name": "Dice1",
        "value": "1"
      },
      {
        "name": "Dice2",

zachmullen

[zach girder]$ cat ~/.pypirc 
[distutils]
index-servers =
    pypi

[pypi]
username:zach.mullen
password:hunter2

zachmullen

Traceback (most recent call last):
  File "SegmentVesselsCNNSeeds/SegmentVesselsCNNSeeds.py", line 37, in <module>
    main(ctk_cli.CLIArgumentParser().parse_args())
  File "SegmentVesselsCNNSeeds/SegmentVesselsCNNSeeds.py", line 20, in main
    args.resampled, args.preprocessed = deploy.prep(args.inputImage, args.outputDir)
  File "/build/TubeTK-build/TubeTK-build/PythonModules/tubetk/vseg/cnn/deploy.py", line 53, in prep
    itk.imwrite(resample, rir, compression=True)
  File "/build/ITK-build/Wrapping/Generators/Python/itkExtras.py", line 430, in imwrite
    writer.Update()
RuntimeError: /build/ITK/Modules/IO/Meta/src/itkMetaImageIO.cxx:1097:

zachmullen

[zach ~]$ strings /usr/bin/python
python
/System/Library/Frameworks/Python.framework/Versions/
/Resources/Python.app/Contents/MacOS/Python
pythonw
VERSIONER_DEBUG
VERSIONER_PYTHON_VERSION
%s environment variable error (ignored)
VERSIONER_PYTHON_PREFER_32_BIT
%s: too long