David Zelený zdealveindy
zdealveindy
/ SPAD_comparison_Enoch
Created
July 2, 2021 15:26
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| Species SPAD502 SPAD502plus | |
| Psychotria rubra 50.4 49 | |
| Psychotria rubra 46.8 49.5 | |
| Psychotria rubra 54.9 56.6 | |
| Solanum diphyllum 65.6 63.6 | |
| Litsea sp. 45.6 42.7 | |
| Mallotus paniculatus 51.6 52.4 | |
| Machilus zuihoensis 43.8 44.1 | |
| Machilus zuihoensis 46.8 47.6 | |
| Ficus ampelas 54.9 56.9 |
zdealveindy
/ plot.iNEXT_quickfix
Last active
June 2, 2021 15:24
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| plot.iNEXT <- function (x, type = 1, se = TRUE, show.legend = TRUE, show.main = TRUE, | |
| col = NULL, xlab = "", ylab = "", ...) | |
| { | |
| if (class(x) != "iNEXT") | |
| stop("invalid object class") | |
| TYPE <- c(1, 2, 3) | |
| SPLIT <- c("none", "order", "site", "both") | |
| if (is.na(pmatch(type, TYPE)) | pmatch(type, TYPE) == -1) | |
| stop("invalid plot type") | |
| type <- pmatch(type, 1:3) |
zdealveindy
/ gist:faebba9e7d7f954ebd0466c249f7998c
Last active
December 1, 2020 03:51
transform2brbl_2020_competition
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| transform2brbl_d06633001 <- function (data) | |
| { | |
| ifelse(data > 75, 7, | |
| ifelse(data > 50, 6, | |
| ifelse(data > 25, 5, | |
| ifelse(data > 3, 4, | |
| ifelse(data > 2, 3, | |
| ifelse(data > 1, 2, | |
| ifelse(data > 0, 1, 0))))))) | |
| } |
zdealveindy
/ f.corner
Created
November 2, 2020 09:11
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| "scenario.1" "scenario.2" "scenario.3" "scenario.4" | |
| "P.2" 1 0.937 0.047 0.059 | |
| "P.4" 1 0.05 0.931 0.052 | |
| "P.6" 1 0.05 0.047 0.004 |
zdealveindy
/ w.mean
Created
November 2, 2020 09:09
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| "scenario.1" "scenario.2" "scenario.3" "scenario.4" | |
| "P.sta" 1 0.931 0.032 0.046 | |
| "P.mod" 1 0.035 0.001 0.045 | |
| "P.two" 1 0.035 0.015 0.027 |
zdealveindy
/ sp_fog.txt
Created
June 4, 2020 15:52
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| Column1 latinname chname frequency Fog_all_mean Fog_all_sd ElV1 ElV0 | |
| 655 Rhododendron chilanshanense 棲蘭山杜鵑 14 0.265354143 0.057870227 4 9 | |
| 184 Cleyera japonica v. taipinensis 太平紅淡比 14 0.242350786 0.072425753 3 NA | |
| 370 Hydrangea paniculata 水亞木 34 0.232884794 0.085428023 3 NA | |
| 303 Fagus hayatae 台灣水青岡 25 0.21363552 0.081733921 3 NA | |
| 374 Hypericum nakamurai 清水金絲桃 23 0.212563739 0.087951868 3 NA | |
| 65 Berberis mingetsuensis 眠月小蘗 32 0.208805125 0.078966655 3 NA | |
| 645 Rhamnus crenata 鈍齒鼠李 62 0.206090903 0.094215006 3 NA | |
| 491 Malus hupehensis 湖北海棠 13 0.193994923 0.083649575 3 NA | |
| 818 Viburnum sympodiale 假繡球 56 0.193772679 0.086908975 3 NA |
zdealveindy
/ create_abbrev_function
Created
November 25, 2019 23:55
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| create_abbrev <- function (names, sep = '') | |
| { | |
| require (stringr) | |
| gen_spe <- str_split (names, pattern = ' ') | |
| gen <- sapply (gen_spe, "[", 1) | |
| spe <- sapply (gen_spe, "[", 2) | |
| gen4 <- str_sub (gen, 1, 4) | |
| spe4 <- paste (str_to_upper (str_sub (spe, 1, 1)), str_sub (spe, 2, 4), sep = '') | |
| gen4spe4 <- paste (gen4, spe4, sep = sep) | |
| return (gen4spe4) |
zdealveindy
/ P_values_and_multiple_testing.r
Created
March 15, 2019 14:33
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| # Single test ---- | |
| # Scenarion 1: correlation between two randomly generated variables (null hypothesis is true) ---- | |
| x.r <- rnorm (100) | |
| y.r <- rnorm (100) | |
| cor.test (x, y)$p.value | |
| # Scenario 2: correlation between two dependent variables (null hypothesis is false), single test ---- | |
| x.d <- rnorm (100) | |
| y.d <- 0.2 * x.d + rnorm (100) |
zdealveindy
/ minmax_hof.csv
Last active
March 12, 2019 16:59
We can make this file beautiful and searchable if this error is corrected: No commas found in this CSV file in line 0.
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| "";"HOF - optimum";"HOF - min";"HOF - max";"HOF - prob-optimum";"HOF - interval";"HOF - model";"HOF - bimodality" | |
| "Ardisia sieboldii_0";"472.584";"61.82";"979.06";"0.648036108843884";"917.24";"V";"1" | |
| "Litsea acuminata_0";"1449.644";"863.408";"2039.868";"0.771208664852136";"1176.46";"IV";"1" | |
| "Machilus thunbergii_0";"1485.536";"2";"2127.604";"0.546238134299948";"2125.604";"V";"1" | |
| "Michelia compressa_0";"1776.66";"755.732";"2131.592";"0.495576034610313";"1375.86";"V";"1" | |
| "Prunus phaeosticta_0";"1473.572";"775.672";"2023.916";"0.514914298959625";"1248.244";"V";"1" | |
| "Schefflera octophylla_0";"727.816";"2";"1337.98";"0.713683956987097";"1335.98";"V";"1" |
zdealveindy
/ long_format.txt
Last active
December 3, 2019 09:57
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| Plot_ID Species_name BA | |
| L2L EuryGlab 98.2 | |
| L2L PrunPhae 629.9 | |
| L2L SycoSine 1295 | |
| L2L NeolAcum 2321.4 | |
| L2L QuerSess 9429.9 | |
| L2R QuerSten 11.3 | |
| L2R SympMacr 11.3 | |
| L2R PrunPhae 59.4 | |
| L2R EuryGlab 77.9 |