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September 28, 2011 16:04
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BLASTN 2.2.25+ | |
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. | |
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. | |
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of | |
protein database search programs", Nucleic Acids Res. 25:3389-3402. | |
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, | |
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) | |
14,049,258 sequences; 36,075,095,184 total letters | |
Query= GFAVMM201BADC0 | |
Length=477 | |
Score E | |
Sequences producing significant alignments: (Bits) Value | |
gi|194750627|ref|XM_001957596.1| Drosophila ananassae GF23929 (D... 42.8 2.1 | |
gi|118568029|gb|CP000325.1| Mycobacterium ulcerans Agy99, comple... 42.8 2.1 | |
gi|24395301|emb|AL928579.6| Mouse DNA sequence from clone RP23-3... 42.8 2.1 | |
gi|326411376|gb|CP002568.1| Polymorphum gilvum SL003B-26A1, comp... 41.0 7.4 | |
gi|317165637|gb|CP002447.1| Mesorhizobium ciceri biovar biserrul... 41.0 7.4 | |
gi|312283773|gb|AC243242.1| Panicum virgatum clone PV_ABa051-K05... 41.0 7.4 | |
gi|303315262|ref|XM_003067593.1| Coccidioides posadasii C735 del... 41.0 7.4 | |
gi|297153409|gb|CP002047.1| Streptomyces bingchenggensis BCW-1, ... 41.0 7.4 | |
gi|295434944|gb|CP002013.1| Burkholderia sp. CCGE1002 chromosome... 41.0 7.4 | |
gi|283945692|gb|CP001854.1| Conexibacter woesei DSM 14684, compl... 41.0 7.4 | |
gi|194346582|gb|CP001111.1| Stenotrophomonas maltophilia R551-3,... 41.0 7.4 | |
gi|166857509|gb|CP000926.1| Pseudomonas putida GB-1, complete ge... 41.0 7.4 | |
gi|148498119|gb|CP000699.1| Sphingomonas wittichii RW1, complete... 41.0 7.4 | |
>gi|194750627|ref|XM_001957596.1| Drosophila ananassae GF23929 (Dana\GF23929), mRNA | |
Length=1641 | |
Score = 42.8 bits (46), Expect = 2.1 | |
Identities = 37/45 (83%), Gaps = 1/45 (2%) | |
Strand=Plus/Plus | |
Query 236 ACGCCGACGACAAGCGGCGAGTCCCTTGTGGACGATCTCGGCCAC 280 | |
|||||||||||||| ||||||||| || |||| |||| |||| | |
Sbjct 137 ACGCCGACGACAAG-GGCGAGTCCATTTGGGACTTTCTCACCCAC 180 | |
>gi|118568029|gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome | |
Length=5631606 | |
Score = 42.8 bits (46), Expect = 2.1 | |
Identities = 36/43 (84%), Gaps = 1/43 (2%) | |
Strand=Plus/Minus | |
Query 69 CCATGACTGCCGGCAGAACATCGACCGGCCAG-TATGTCGGCC 110 | |
||||| ||||||||||||| |||| || || | |||| ||||| | |
Sbjct 890715 CCATGTCTGCCGGCAGAACTTCGAGCGACCCGATATGGCGGCC 890673 | |
>gi|24395301|emb|AL928579.6| Mouse DNA sequence from clone RP23-302M15 on chromosome 4, complete | |
sequence | |
Length=184057 | |
Score = 42.8 bits (46), Expect = 2.1 | |
Identities = 31/35 (89%), Gaps = 1/35 (2%) | |
Strand=Plus/Plus | |
Query 437 AGCTGCAACATGAATGTGCTCGCAGATCTTCAGGA 471 | |
|||||||||||| ||||||| ||||| |||| ||| | |
Sbjct 146437 AGCTGCAACATGGATGTGCTAGCAGA-CTTCTGGA 146470 | |
>gi|326411376|gb|CP002568.1| Polymorphum gilvum SL003B-26A1, complete genome | |
Length=4649365 | |
Score = 41.0 bits (44), Expect = 7.4 | |
Identities = 33/40 (83%), Gaps = 0/40 (0%) | |
Strand=Plus/Plus | |
Query 238 GCCGACGACAAGCGGCGAGTCCCTTGTGGACGATCTCGGC 277 | |
||||||||| ||||||||||| | ||| |||| ||||| | |
Sbjct 2023755 GCCGACGACGCGCGGCGAGTCCGTGGTGCTCGATGTCGGC 2023794 | |
>gi|317165637|gb|CP002447.1| Mesorhizobium ciceri biovar biserrulae WSM1271, complete genome | |
Length=6264489 | |
Score = 41.0 bits (44), Expect = 7.4 | |
Identities = 22/22 (100%), Gaps = 0/22 (0%) | |
Strand=Plus/Plus | |
Query 300 TTGATGCCGAGGCGGATGCCAT 321 | |
|||||||||||||||||||||| | |
Sbjct 4510008 TTGATGCCGAGGCGGATGCCAT 4510029 | |
>gi|312283773|gb|AC243242.1| Panicum virgatum clone PV_ABa051-K05, complete sequence | |
Length=161398 | |
Score = 41.0 bits (44), Expect = 7.4 | |
Identities = 28/32 (88%), Gaps = 0/32 (0%) | |
Strand=Plus/Plus | |
Query 271 TCTCGGCCACCTGTTTGAGTGGTATTCTTTTG 302 | |
||| |||||||||||||||| ||||| || || | |
Sbjct 137850 TCTTGGCCACCTGTTTGAGTTGTATTTTTCTG 137881 | |
>gi|303315262|ref|XM_003067593.1| Coccidioides posadasii C735 delta SOWgp Sugar transporter family | |
protein, mRNA | |
Length=1947 | |
Score = 41.0 bits (44), Expect = 7.4 | |
Identities = 31/37 (84%), Gaps = 0/37 (0%) | |
Strand=Plus/Minus | |
Query 289 GTGGTATTCTTTTGATGCCGAGGCGGATGCCATTGCA 325 | |
||||| ||| | ||||||||||||| | ||| ||||| | |
Sbjct 84 GTGGTCTTCATATGATGCCGAGGCGTAAGCCTTTGCA 48 | |
>gi|297153409|gb|CP002047.1| Streptomyces bingchenggensis BCW-1, complete genome | |
Length=11936683 | |
Score = 41.0 bits (44), Expect = 7.4 | |
Identities = 27/30 (90%), Gaps = 0/30 (0%) | |
Strand=Plus/Plus | |
Query 38 GTCGGCAGCGGATCTCCGAAAACCATCAAG 67 | |
|||||||||||| ||||||| |||||||| | |
Sbjct 3073377 GTCGGCAGCGGAACTCCGAATTCCATCAAG 3073406 | |
>gi|295434944|gb|CP002013.1| Burkholderia sp. CCGE1002 chromosome 1, complete sequence | |
Length=3518940 | |
Score = 41.0 bits (44), Expect = 7.4 | |
Identities = 33/40 (83%), Gaps = 0/40 (0%) | |
Strand=Plus/Minus | |
Query 212 ATGGGCGAATCGATCACCTTCAACACGCCGACGACAAGCG 251 | |
|| |||||||||||| | |||||||||| | ||| |||| | |
Sbjct 2243828 ATCGGCGAATCGATCGCGTTCAACACGCTGGCGATGAGCG 2243789 | |
>gi|283945692|gb|CP001854.1| Conexibacter woesei DSM 14684, complete genome | |
Length=6359369 | |
Score = 41.0 bits (44), Expect = 7.4 | |
Identities = 35/43 (82%), Gaps = 3/43 (6%) | |
Strand=Plus/Minus | |
Query 101 TATGTCGGCCATGGCTTCTACAGTCCGGACATGATCGACGGCG 143 | |
||||||||||| | ||||||| ||| || || ||||||||| | |
Sbjct 2039361 TATGTCGGCCACGACTTCTAC---CCGAACCTGGTCGACGGCG 2039322 | |
>gi|194346582|gb|CP001111.1| Stenotrophomonas maltophilia R551-3, complete genome | |
Length=4573969 | |
Score = 41.0 bits (44), Expect = 7.4 | |
Identities = 32/36 (89%), Gaps = 2/36 (5%) | |
Strand=Plus/Minus | |
Query 102 ATGTCGGCCATGGC-TTCTACAGTCCGGACATGATC 136 | |
|||||||||||||| || |||| |||||||||||| | |
Sbjct 3897524 ATGTCGGCCATGGCGTTGCACAG-CCGGACATGATC 3897490 | |
>gi|166857509|gb|CP000926.1| Pseudomonas putida GB-1, complete genome | |
Length=6078430 | |
Score = 41.0 bits (44), Expect = 7.4 | |
Identities = 35/41 (86%), Gaps = 2/41 (4%) | |
Strand=Plus/Minus | |
Query 222 CGATCACCTTCAACACG-CCGACGACAAGCGGCGAGTCCCT 261 | |
||||||||||| ||||| ||||||| ||||| | |||| || | |
Sbjct 5087565 CGATCACCTTCGACACGTCCGACGA-AAGCGCCAAGTCGCT 5087526 | |
>gi|148498119|gb|CP000699.1| Sphingomonas wittichii RW1, complete genome | |
Length=5382261 | |
Score = 41.0 bits (44), Expect = 7.4 | |
Identities = 32/38 (85%), Gaps = 3/38 (7%) | |
Strand=Plus/Plus | |
Query 208 GACGATG---GGCGAATCGATCACCTTCAACACGCCGA 242 | |
||||||| |||| |||||||||||||| ||||||| | |
Sbjct 4265124 GACGATGTGGGGCGGCTCGATCACCTTCAAGACGCCGA 4265161 | |
Lambda K H | |
0.634 0.408 0.912 | |
Gapped | |
Lambda K H | |
0.625 0.410 0.780 | |
Effective search space used: 15727850050068 | |
Query= GFAVMM201A1JOH | |
Length=57 | |
Score E | |
Sequences producing significant alignments: (Bits) Value | |
gi|22416007|emb|AL772315.4| Mouse DNA sequence from clone RP23-5... 41.0 0.42 | |
gi|117168385|gb|AC190175.4| Pan troglodytes BAC clone CH251-542A... 39.2 1.5 | |
gi|45238691|gb|AC145377.2| Pan troglodytes BAC clone RP43-11P19 ... 39.2 1.5 | |
gi|4926907|gb|AC004936.2| Homo sapiens PAC clone RP5-959C21 from... 39.2 1.5 | |
gi|31414500|emb|AL831797.4| Oryza sativa chromosome 12, . BAC OS... 39.2 1.5 | |
gi|158967071|gb|CP000033.3| Lactobacillus acidophilus NCFM, comp... 37.4 5.1 | |
>gi|22416007|emb|AL772315.4| Mouse DNA sequence from clone RP23-54A13 on chromosome 4, complete | |
sequence | |
Length=200266 | |
Score = 41.0 bits (44), Expect = 0.42 | |
Identities = 28/31 (91%), Gaps = 2/31 (6%) | |
Strand=Plus/Minus | |
Query 6 CGTTCCAGTCACGATACATACCAATAACGAC 36 | |
||||||||| | |||||||||||||||||| | |
Sbjct 26821 CGTTCCAGTGA--ATACATACCAATAACGAC 26793 | |
>gi|117168385|gb|AC190175.4| Pan troglodytes BAC clone CH251-542A7 from chromosome 7, complete | |
sequence | |
Length=214222 | |
Score = 39.2 bits (42), Expect = 1.5 | |
Identities = 26/29 (90%), Gaps = 0/29 (0%) | |
Strand=Plus/Minus | |
Query 19 ATACATACCAATAACGACTTCTATATGTA 47 | |
|||||||||||||| | ||||||||||| | |
Sbjct 166678 ATACATACCAATAAATATTTCTATATGTA 166650 | |
>gi|45238691|gb|AC145377.2| Pan troglodytes BAC clone RP43-11P19 from chromosome 7, complete | |
sequence | |
Length=194463 | |
Score = 39.2 bits (42), Expect = 1.5 | |
Identities = 26/29 (90%), Gaps = 0/29 (0%) | |
Strand=Plus/Plus | |
Query 19 ATACATACCAATAACGACTTCTATATGTA 47 | |
|||||||||||||| | ||||||||||| | |
Sbjct 192749 ATACATACCAATAAATATTTCTATATGTA 192777 | |
>gi|4926907|gb|AC004936.2| Homo sapiens PAC clone RP5-959C21 from 7, complete sequence | |
Length=139949 | |
Score = 39.2 bits (42), Expect = 1.5 | |
Identities = 26/29 (90%), Gaps = 0/29 (0%) | |
Strand=Plus/Minus | |
Query 19 ATACATACCAATAACGACTTCTATATGTA 47 | |
|||||||||||||| | ||||||||||| | |
Sbjct 12654 ATACATACCAATAAATATTTCTATATGTA 12626 | |
>gi|31414500|emb|AL831797.4| Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa | |
from chromosome 12 of cultivar Nipponbare of ssp. japonica | |
of Oryza sativa (rice), complete sequence | |
Length=132741 | |
Score = 39.2 bits (42), Expect = 1.5 | |
Identities = 23/24 (96%), Gaps = 0/24 (0%) | |
Strand=Plus/Plus | |
Query 18 GATACATACCAATAACGACTTCTA 41 | |
||||||||||||||| |||||||| | |
Sbjct 126346 GATACATACCAATAAAGACTTCTA 126369 | |
>gi|158967071|gb|CP000033.3| Lactobacillus acidophilus NCFM, complete genome | |
Length=1993560 | |
Score = 37.4 bits (40), Expect = 5.1 | |
Identities = 20/20 (100%), Gaps = 0/20 (0%) | |
Strand=Plus/Minus | |
Query 14 TCACGATACATACCAATAAC 33 | |
|||||||||||||||||||| | |
Sbjct 756012 TCACGATACATACCAATAAC 755993 | |
Lambda K H | |
0.634 0.408 0.912 | |
Gapped | |
Lambda K H | |
0.625 0.410 0.780 | |
Effective search space used: 890637973200 | |
Query= GFAVMM201D933Z | |
Length=119 | |
Score E | |
Sequences producing significant alignments: (Bits) Value | |
gi|332189094|gb|CP002684.1| Arabidopsis thaliana chromosome 1, c... 41.0 1.4 | |
gi|313747610|gb|AC237431.3| Macaca mulatta Y Chr BAC RMAEX-106G5... 41.0 1.4 | |
gi|168693784|gb|AC213321.3| MACACA MULATTA BAC clone CH250-541A1... 41.0 1.4 | |
gi|8778954|gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome ... 41.0 1.4 | |
gi|256052438|ref|XM_002569731.1| Schistosoma mansoni GTP-binding... 39.2 5.0 | |
gi|238867551|gb|CP001600.1| Edwardsiella ictaluri 93-146, comple... 39.2 5.0 | |
gi|224465197|ref|NG_009929.1| Homo sapiens like-glycosyltransfer... 39.2 5.0 | |
gi|147784643|emb|AM469007.2| Vitis vinifera contig VV78X098884.1... 39.2 5.0 | |
gi|123663234|emb|AM455601.1| Vitis vinifera, whole genome shotgu... 39.2 5.0 | |
gi|118344518|gb|AC192748.2| Gallus gallus BAC clone CH261-166H21... 39.2 5.0 | |
gi|90309320|gb|AY607844.2| Edwardsiella ictaluri transposase-lik... 39.2 5.0 | |
gi|55908997|gb|AC102414.8| Mus musculus chromosome 15, clone RP2... 39.2 5.0 | |
gi|72096292|gb|AC162857.5| Mus musculus chromosome 15, clone RP2... 39.2 5.0 | |
gi|22415845|emb|AL139016.8| Human DNA sequence from clone RP4-65... 39.2 5.0 | |
gi|6572307|emb|Z82173.2| Human DNA sequence from clone SC22CB-1D... 39.2 5.0 | |
gi|56410822|gb|AC140454.4| Mus musculus BAC clone RP24-163I14 fr... 39.2 5.0 | |
gi|38707373|emb|BX255930.3| Zebrafish DNA sequence from clone DK... 39.2 5.0 | |
>gi|332189094|gb|CP002684.1| Arabidopsis thaliana chromosome 1, complete sequence | |
Length=30427671 | |
Score = 41.0 bits (44), Expect = 1.4 | |
Identities = 25/27 (93%), Gaps = 0/27 (0%) | |
Strand=Plus/Minus | |
Query 70 AACAGAAACCACTACGAAAGGAAAGAA 96 | |
||||||||| |||||||||||||||| | |
Sbjct 17871124 AACAGAAACTTCTACGAAAGGAAAGAA 17871098 | |
>gi|313747610|gb|AC237431.3| Macaca mulatta Y Chr BAC RMAEX-106G5 complete sequence | |
Length=169910 | |
Score = 41.0 bits (44), Expect = 1.4 | |
Identities = 28/31 (91%), Gaps = 2/31 (6%) | |
Strand=Plus/Minus | |
Query 75 AAACCACTACGAAAGGAAAGAAATGCCTCTA 105 | |
|||||| ||||||||||| ||||||||||| | |
Sbjct 60448 AAACCA--ACGAAAGGAAATAAATGCCTCTA 60420 | |
>gi|168693784|gb|AC213321.3| MACACA MULATTA BAC clone CH250-541A11 from chromosome y, complete | |
sequence | |
Length=156689 | |
Score = 41.0 bits (44), Expect = 1.4 | |
Identities = 28/31 (91%), Gaps = 2/31 (6%) | |
Strand=Plus/Plus | |
Query 75 AAACCACTACGAAAGGAAAGAAATGCCTCTA 105 | |
|||||| ||||||||||| ||||||||||| | |
Sbjct 62327 AAACCA--ACGAAAGGAAATAAATGCCTCTA 62355 | |
>gi|8778954|gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete | |
sequence | |
Length=102078 | |
Score = 41.0 bits (44), Expect = 1.4 | |
Identities = 25/27 (93%), Gaps = 0/27 (0%) | |
Strand=Plus/Plus | |
Query 70 AACAGAAACCACTACGAAAGGAAAGAA 96 | |
||||||||| |||||||||||||||| | |
Sbjct 32940 AACAGAAACTTCTACGAAAGGAAAGAA 32966 | |
>gi|256052438|ref|XM_002569731.1| Schistosoma mansoni GTP-binding protein era, putative (Smp_164220) | |
mRNA, complete cds | |
Length=1341 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 21/21 (100%), Gaps = 0/21 (0%) | |
Strand=Plus/Minus | |
Query 40 TTCTCTTTTCGTATTTGGAAC 60 | |
||||||||||||||||||||| | |
Sbjct 159 TTCTCTTTTCGTATTTGGAAC 139 | |
>gi|238867551|gb|CP001600.1| Edwardsiella ictaluri 93-146, complete genome | |
Length=3812315 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 31/37 (84%), Gaps = 3/37 (8%) | |
Strand=Plus/Plus | |
Query 58 AACAGCTGTTATA---ACAGAAACCACTACGAAAGGA 91 | |
|||||| |||||| ||| ||||||||||| ||||| | |
Sbjct 1978968 AACAGCCGTTATATCCACATAAACCACTACGCAAGGA 1979004 | |
>gi|224465197|ref|NG_009929.1| Homo sapiens like-glycosyltransferase (LARGE), RefSeqGene on | |
chromosome 22 | |
Length=654355 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 30/36 (84%), Gaps = 0/36 (0%) | |
Strand=Plus/Plus | |
Query 66 TTATAACAGAAACCACTACGAAAGGAAAGAAATGCC 101 | |
||| ||||||||||| || |||||||| ||| ||| | |
Sbjct 603836 TTAAAACAGAAACCAAAACCAAAGGAAAAAAAAGCC 603871 | |
>gi|147784643|emb|AM469007.2| Vitis vinifera contig VV78X098884.11, whole genome shotgun sequence | |
Length=7756 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 24/26 (93%), Gaps = 0/26 (0%) | |
Strand=Plus/Minus | |
Query 71 ACAGAAACCACTACGAAAGGAAAGAA 96 | |
||| |||||||||| ||||||||||| | |
Sbjct 6827 ACAAAAACCACTACAAAAGGAAAGAA 6802 | |
>gi|123663234|emb|AM455601.1| Vitis vinifera, whole genome shotgun sequence, contig VV78X123660.5, | |
clone ENTAV 115 | |
Length=34741 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 24/26 (93%), Gaps = 0/26 (0%) | |
Strand=Plus/Plus | |
Query 71 ACAGAAACCACTACGAAAGGAAAGAA 96 | |
||| |||||||||| ||||||||||| | |
Sbjct 34120 ACAAAAACCACTACAAAAGGAAAGAA 34145 | |
>gi|118344518|gb|AC192748.2| Gallus gallus BAC clone CH261-166H21 from chromosome z, complete | |
sequence | |
Length=226699 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 27/31 (88%), Gaps = 0/31 (0%) | |
Strand=Plus/Plus | |
Query 58 AACAGCTGTTATAACAGAAACCACTACGAAA 88 | |
||||||||| |||||||||||| || |||| | |
Sbjct 178051 AACAGCTGTCATAACAGAAACCCATATGAAA 178081 | |
>gi|90309320|gb|AY607844.2| Edwardsiella ictaluri transposase-like protein gene, complete | |
cds; urease operon, complete sequence; and ammonium transporter | |
(amtB) and TnpA (tnpA) genes, complete cds | |
Length=11426 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 31/37 (84%), Gaps = 3/37 (8%) | |
Strand=Plus/Minus | |
Query 58 AACAGCTGTTATA---ACAGAAACCACTACGAAAGGA 91 | |
|||||| |||||| ||| ||||||||||| ||||| | |
Sbjct 8030 AACAGCCGTTATATCCACATAAACCACTACGCAAGGA 7994 | |
>gi|55908997|gb|AC102414.8| Mus musculus chromosome 15, clone RP24-474D5, complete sequence | |
Length=159739 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 24/26 (93%), Gaps = 0/26 (0%) | |
Strand=Plus/Plus | |
Query 70 AACAGAAACCACTACGAAAGGAAAGA 95 | |
||||||||||||||| |||||| ||| | |
Sbjct 71851 AACAGAAACCACTACAAAAGGAGAGA 71876 | |
>gi|72096292|gb|AC162857.5| Mus musculus chromosome 15, clone RP23-333C11, complete sequence | |
Length=224913 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 24/26 (93%), Gaps = 0/26 (0%) | |
Strand=Plus/Minus | |
Query 70 AACAGAAACCACTACGAAAGGAAAGA 95 | |
||||||||||||||| |||||| ||| | |
Sbjct 3370 AACAGAAACCACTACAAAAGGAGAGA 3345 | |
>gi|22415845|emb|AL139016.8| Human DNA sequence from clone RP4-658C17 on chromosome 1p11.1-13.3, | |
complete sequence | |
Length=100643 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 22/23 (96%), Gaps = 0/23 (0%) | |
Strand=Plus/Plus | |
Query 87 AAGGAAAGAAATGCCTCTANAAG 109 | |
||||||||||||||||||| ||| | |
Sbjct 22086 AAGGAAAGAAATGCCTCTAGAAG 22108 | |
>gi|6572307|emb|Z82173.2| Human DNA sequence from clone SC22CB-1D7 on chromosome 22 Contains | |
a novel gene and part of the LARGE gene for like-glycosyltransferase, | |
complete sequence | |
Length=37731 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 30/36 (84%), Gaps = 0/36 (0%) | |
Strand=Plus/Minus | |
Query 66 TTATAACAGAAACCACTACGAAAGGAAAGAAATGCC 101 | |
||| ||||||||||| || |||||||| ||| ||| | |
Sbjct 15530 TTAAAACAGAAACCAAAACCAAAGGAAAAAAAAGCC 15495 | |
>gi|56410822|gb|AC140454.4| Mus musculus BAC clone RP24-163I14 from 1, complete sequence | |
Length=171533 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 28/32 (88%), Gaps = 4/32 (12%) | |
Strand=Plus/Plus | |
Query 66 TTATAACAGAAACCACTACGAAAGGAAAGAAA 97 | |
|||||||||||||||| |||||||||||| | |
Sbjct 140248 TTATAACAGAAACCAC----AAAGGAAAGAAA 140275 | |
>gi|38707373|emb|BX255930.3| Zebrafish DNA sequence from clone DKEY-101K6 in linkage group | |
9 Contains the 3' end of the mcm3ap gene for MCM3 minichromosome | |
maintenance deficient 3 (S. cerevisiae) associated protein, | |
the gene for a novel protein similar to vertebrate lanosterol | |
synthase (2,3-oxidosqualene-lanosterol cyclase) (LSS), | |
the gene for a novel protein similar to human and mouse leishmanolysin-like | |
(metallopeptidase M8 family) (LMLN), the | |
gene for a novel protein similar to vertebrate oxysterol binding | |
protein-like 10 (OSBPL10), the gene for a novel protein | |
similar to vertebrate transforming growth factor, beta receptor | |
II (70/80kDa) (TGFBR2), the snx4 gene for sorting nexin | |
4, the gene for a novel protein similar to vertebrate zinc | |
finger protein 148 (ZNF148) and the 5' end of the gene for a | |
novel protein similar to vertebrate solute carrier family 12 | |
(potassium/chloride transporters), member 8 (SLC12A8), complete | |
sequence | |
Length=185559 | |
Score = 39.2 bits (42), Expect = 5.0 | |
Identities = 21/21 (100%), Gaps = 0/21 (0%) | |
Strand=Plus/Plus | |
Query 62 GCTGTTATAACAGAAACCACT 82 | |
||||||||||||||||||||| | |
Sbjct 124003 GCTGTTATAACAGAAACCACT 124023 | |
Lambda K H | |
0.634 0.408 0.912 | |
Gapped | |
Lambda K H | |
0.625 0.410 0.780 | |
Effective search space used: 3062586391620 | |
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, | |
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) | |
Posted date: May 21, 2011 4:39 PM | |
Number of letters in database: 36,075,095,184 | |
Number of sequences in database: 14,049,258 | |
Matrix: blastn matrix 2 -3 | |
Gap Penalties: Existence: 5, Extension: 2 |
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