Created
October 28, 2012 16:30
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--- a/src/segment_juncs.cpp 2012-10-17 09:29:03.000000000 -0700 | |
+++ b/src/segment_juncs.cpp 2012-10-27 22:24:44.000000000 -0700 | |
@@ -4854,15 +4854,15 @@ | |
exit(0); | |
} | |
- std::set<Junction, skip_count_lt> vseg_juncs[num_threads]; | |
+ std::set<Junction, skip_count_lt> vseg_juncs[1]; | |
std::set<Junction, skip_count_lt> cov_juncs; | |
std::set<Junction, skip_count_lt> butterfly_juncs; | |
std::set<Junction> juncs; | |
- std::set<Deletion> vdeletions[num_threads]; | |
- std::set<Insertion> vinsertions[num_threads]; | |
- FusionSimpleSet vfusions[num_threads]; | |
+ std::set<Deletion> vdeletions[1]; | |
+ std::set<Insertion> vinsertions[1]; | |
+ FusionSimpleSet vfusions[1]; | |
RefSequenceTable rt(sam_header, true); | |
--- a/src/tophat_reports.cpp 2012-10-18 10:43:09.000000000 -0700 | |
+++ b/src/tophat_reports.cpp 2012-10-27 22:39:31.000000000 -0700 | |
@@ -2290,11 +2290,11 @@ | |
num_threads = 1; | |
} | |
- JunctionSet vjunctions[num_threads]; | |
- InsertionSet vinsertions[num_threads]; | |
- DeletionSet vdeletions[num_threads]; | |
- FusionSet vfusions[num_threads]; | |
- Coverage vcoverages[num_threads]; | |
+ JunctionSet vjunctions[1]; | |
+ InsertionSet vinsertions[1]; | |
+ DeletionSet vdeletions[1]; | |
+ FusionSet vfusions[1]; | |
+ Coverage vcoverages[1]; | |
vector<boost::thread*> threads; | |
for (int i = 0; i < num_threads; ++i) | |
@@ -2420,10 +2420,10 @@ | |
fprintf(stderr, "Warning: %lu small overhang junctions!\n", (long unsigned int)small_overhangs); | |
*/ | |
- JunctionSet vfinal_junctions[num_threads]; | |
- InsertionSet vfinal_insertions[num_threads]; | |
- DeletionSet vfinal_deletions[num_threads]; | |
- FusionSet vfinal_fusions[num_threads]; | |
+ JunctionSet vfinal_junctions[1]; | |
+ InsertionSet vfinal_insertions[1]; | |
+ DeletionSet vfinal_deletions[1]; | |
+ FusionSet vfinal_fusions[1]; | |
for (int i = 0; i < num_threads; ++i) | |
{ |
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