Example of job script for stallo

jobscript.sh

#!/usr/bin/env bash

# commands to the batch system start with '#SBATCH '

# pick a name for your job
#SBATCH --job-name=my_job

# I want 500 duplicate jobs that use a single cpu each
#----------------------------------------------------------------
# one machine per job:
#SBATCH --nodes=1

# one cpu per job (if you're not using a special parallell backend you only need one)
#SBATCH --ntasks-per-node=1

# duplicate this job 500 times
#SBATCH --array=1-500


# You need to have realistic estimates of how long the job runs & how much memory you need
#----------------------------------------------------------------
# run each job for 10 hrs:
#SBATCH --time=0-10:00:00

# need 2000MB of memory per job:
#SBATCH --mem=2000

# Setting this option makes the batch system email you when something happens to your job:
#SBATCH --mail-type=ALL


# I have set all the parameters I want, now I can run my job
#----------------------------------------------------------------
# load R:
module load R

# execute my script:
R --vanilla < /home/einar/example_rscript.R

exit 0