Created
May 9, 2023 10:52
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(partial) EasyBuild log for failed build of /tmp/eb-ppl4dd8_/files_pr17836/m/MATLAB/MATLAB-2022b-r3.eb (PR(s) #17836)
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| == 2023-05-09 12:15:42,798 easyblock.py:313 INFO This is EasyBuild 4.7.1 (framework: 4.7.1, easyblocks: 4.7.1) on host bigstar05. | |
| == 2023-05-09 12:15:42,799 easyblock.py:319 INFO This is easyblock EB_MATLAB from module easybuild.easyblocks.matlab (/usr/local/lib/python3.8/dist-packages/easybuild/easyblocks/m/matlab.py) | |
| == 2023-05-09 12:15:42,799 easyblock.py:1040 INFO Build dir set to /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3 | |
| == 2023-05-09 12:15:42,799 easyblock.py:1097 INFO Software install dir set to /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| == 2023-05-09 12:15:42,800 easyblock.py:1102 INFO Module install dir set to /sw/easybuild/amd/k10/2022b/modules/all | |
| == 2023-05-09 12:15:42,800 easyblock.py:288 INFO Init completed for application name MATLAB version 2022b | |
| == 2023-05-09 12:15:42,800 easyblock.py:4175 INFO Obtained application instance of for MATLAB (easyblock: None) | |
| == 2023-05-09 12:15:42,801 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:15:42,802 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', github_account='matlab', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:15:42,806 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2023-05-09 12:15:42,807 filetools.py:1918 INFO Creating directory /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430 (parents: True, set_gid: False, sticky: False) | |
| == 2023-05-09 12:15:42,807 easyblock.py:4429 INFO Dumped easyconfig instance to /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/MATLAB-2022b-r3.eb | |
| == 2023-05-09 12:15:42,808 filetools.py:1918 INFO Creating directory /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2023-05-09 12:15:42,808 filetools.py:2431 INFO /usr/local/lib/python3.8/dist-packages/easybuild/easyblocks/m/matlab.py copied to /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/easyblocks/matlab.py | |
| == 2023-05-09 12:15:42,808 easyblock.py:4409 INFO Dumped easyblock matlab.py required for reproduction to /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/easyblocks | |
| == 2023-05-09 12:15:42,809 filetools.py:2431 INFO /usr/local/lib/python3.8/dist-packages/easybuild/easyblocks/generic/binary.py copied to /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/easyblocks/binary.py | |
| == 2023-05-09 12:15:42,809 easyblock.py:4409 INFO Dumped easyblock binary.py required for reproduction to /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/easyblocks | |
| == 2023-05-09 12:15:42,809 filetools.py:2431 INFO /usr/local/lib/python3.8/dist-packages/easybuild/easyblocks/generic/packedbinary.py copied to /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/easyblocks/packedbinary.py | |
| == 2023-05-09 12:15:42,810 easyblock.py:4409 INFO Dumped easyblock packedbinary.py required for reproduction to /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/easyblocks | |
| == 2023-05-09 12:15:42,810 filetools.py:1918 INFO Creating directory /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/hooks (parents: True, set_gid: False, sticky: False) | |
| == 2023-05-09 12:15:42,811 filetools.py:2431 INFO /sw/easybuild/hooks/amd_k10_2022b.py copied to /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/hooks/amd_k10_2022b.py | |
| == 2023-05-09 12:15:42,812 easyblock.py:4441 INFO Dumped hooks file /sw/easybuild/hooks/amd_k10_2022b.py which is (potentially) required for reproduction to /tmp/eb-ppl4dd8_/reprod_20230509121542_3305430/hooks/amd_k10_2022b.py | |
| == 2023-05-09 12:15:42,813 easyblock.py:2188 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2023-05-09 12:15:42,813 build_log.py:267 INFO building and installing Core/MATLAB/2022b-r3... | |
| == 2023-05-09 12:15:42,821 filetools.py:2011 INFO Lock /sw/easybuild/amd/k10/2022b/software/.locks/_sw_easybuild_amd_k10_2022b_software_MATLAB_2022b-r3.lock does not exist | |
| == 2023-05-09 12:15:42,822 filetools.py:1952 INFO Creating lock at /sw/easybuild/amd/k10/2022b/software/.locks/_sw_easybuild_amd_k10_2022b_software_MATLAB_2022b-r3.lock... | |
| == 2023-05-09 12:15:42,822 filetools.py:1918 INFO Creating directory /sw/easybuild/amd/k10/2022b/software/.locks/_sw_easybuild_amd_k10_2022b_software_MATLAB_2022b-r3.lock (parents: True, set_gid: False, sticky: False) | |
| == 2023-05-09 12:15:42,830 filetools.py:1961 INFO Lock created: /sw/easybuild/amd/k10/2022b/software/.locks/_sw_easybuild_amd_k10_2022b_software_MATLAB_2022b-r3.lock | |
| == 2023-05-09 12:15:42,830 build_log.py:267 INFO fetching files... | |
| == 2023-05-09 12:15:42,830 easyblock.py:3901 INFO Starting fetch step | |
| == 2023-05-09 12:15:42,831 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:15:42,831 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', start_dir='None', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:15:42,831 easyblock.py:3909 INFO Running method fetch_step part of step fetch | |
| == 2023-05-09 12:15:42,831 easyblock.py:2310 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2023-05-09 12:15:42,832 easyblock.py:802 INFO Considering directory in which easyconfig file is located when searching for R2022b_Update_3_Linux.iso: /tmp/eb-ppl4dd8_/files_pr17836/m/MATLAB | |
| == 2023-05-09 12:15:42,832 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /usr/local/bin/eb | |
| == 2023-05-09 12:15:42,833 tools.py:287 INFO Also considering installation prefix /usr/local (determined via path to 'eb' script)... | |
| == 2023-05-09 12:15:42,838 easyblock.py:844 INFO Found file R2022b_Update_3_Linux.iso at /sw/easybuild/sources/m/MATLAB/R2022b_Update_3_Linux.iso | |
| == 2023-05-09 12:15:42,839 easyblock.py:496 INFO Added sources: [{'name': 'R2022b_Update_3_Linux.iso', 'path': '/sw/easybuild/sources/m/MATLAB/R2022b_Update_3_Linux.iso', 'cmd': None, 'checksum': 'bd8556b6c68d35e3ff4ccf0d6ca418ce2bc14b7e8eb8d492f492483111363c3f', 'finalpath': '/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3'}] | |
| == 2023-05-09 12:15:42,839 easyblock.py:2353 INFO no patches provided | |
| == 2023-05-09 12:17:20,899 easyblock.py:2363 INFO md5 checksum for /sw/easybuild/sources/m/MATLAB/R2022b_Update_3_Linux.iso: e6e8e9e3d0ac0729fc412a7bece9b292 | |
| == 2023-05-09 12:19:44,155 easyblock.py:2363 INFO sha256 checksum for /sw/easybuild/sources/m/MATLAB/R2022b_Update_3_Linux.iso: bd8556b6c68d35e3ff4ccf0d6ca418ce2bc14b7e8eb8d492f492483111363c3f | |
| == 2023-05-09 12:19:44,158 easyblock.py:2398 INFO Checking dirs that need to be created: ['/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', '/sw/easybuild/amd/k10/2022b/modules/all/Core/MATLAB'] | |
| == 2023-05-09 12:19:44,160 build_log.py:267 INFO ... (took 4 mins 1 secs) | |
| == 2023-05-09 12:19:44,161 build_log.py:267 INFO creating build dir, resetting environment... | |
| == 2023-05-09 12:19:44,161 easyblock.py:3901 INFO Starting ready step | |
| == 2023-05-09 12:19:44,161 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:19:44,162 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', start_dir='None', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:19:44,163 easyblock.py:3909 INFO Running method check_readiness_step part of step ready | |
| == 2023-05-09 12:19:44,183 run.py:236 INFO running cmd: ulimit -u | |
| == 2023-05-09 12:19:44,200 easyblock.py:2207 INFO Setting parallelism: 16 | |
| == 2023-05-09 12:19:44,294 easyblock.py:2232 INFO Removing existing module file /sw/easybuild/amd/k10/2022b/modules/all/Core/MATLAB/2022b-r3.lua | |
| == 2023-05-09 12:19:44,302 easyblock.py:3909 INFO Running method make_builddir part of step ready | |
| == 2023-05-09 12:19:44,303 filetools.py:1918 INFO Creating directory /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3 (parents: True, set_gid: False, sticky: False) | |
| == 2023-05-09 12:19:44,304 easyblock.py:3909 INFO Running method reset_env part of step ready | |
| == 2023-05-09 12:19:44,305 easyblock.py:3909 INFO Running method handle_iterate_opts part of step ready | |
| == 2023-05-09 12:19:44,305 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:19:44,306 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='None', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:19:44,307 build_log.py:267 INFO unpacking... | |
| == 2023-05-09 12:19:44,307 easyblock.py:3901 INFO Starting source step | |
| == 2023-05-09 12:19:44,307 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:19:44,307 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='None', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:19:44,308 easyblock.py:3909 INFO Running method checksum_step part of step source | |
| == 2023-05-09 12:22:08,582 easyblock.py:2416 INFO Checksum verification for /sw/easybuild/sources/m/MATLAB/R2022b_Update_3_Linux.iso using bd8556b6c68d35e3ff4ccf0d6ca418ce2bc14b7e8eb8d492f492483111363c3f passed. | |
| == 2023-05-09 12:22:08,584 easyblock.py:3909 INFO Running method extract_step part of step source | |
| == 2023-05-09 12:22:08,584 easyblock.py:2528 INFO Unpacking source R2022b_Update_3_Linux.iso | |
| == 2023-05-09 12:22:08,587 run.py:236 INFO running cmd: 7z x /sw/easybuild/sources/m/MATLAB/R2022b_Update_3_Linux.iso | |
| == 2023-05-09 12:24:42,528 build_log.py:267 INFO ... (took 4 mins 58 secs) | |
| == 2023-05-09 12:24:42,555 build_log.py:267 INFO patching... | |
| == 2023-05-09 12:24:42,556 easyblock.py:3901 INFO Starting patch step | |
| == 2023-05-09 12:24:42,556 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:24:42,557 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='None', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:24:42,557 easyblock.py:3909 INFO Running method patch_step part of step patch | |
| == 2023-05-09 12:24:42,558 build_log.py:267 INFO preparing... | |
| == 2023-05-09 12:24:42,558 easyblock.py:3901 INFO Starting prepare step | |
| == 2023-05-09 12:24:42,558 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:24:42,559 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='None', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:24:42,559 easyblock.py:3909 INFO Running method prepare_step part of step prepare | |
| == 2023-05-09 12:24:43,519 toolchain.py:722 INFO Loading dependencies using system toolchain... | |
| == 2023-05-09 12:24:43,610 filetools.py:527 INFO Command gcc found at /usr/bin/gcc | |
| == 2023-05-09 12:24:43,611 toolchain.py:275 INFO Found compiler command gcc at /usr/bin/gcc, so setting $CC in minimal build environment | |
| == 2023-05-09 12:24:43,611 filetools.py:527 INFO Command g++ found at /usr/bin/g++ | |
| == 2023-05-09 12:24:43,611 toolchain.py:275 INFO Found compiler command g++ at /usr/bin/g++, so setting $CXX in minimal build environment | |
| == 2023-05-09 12:24:43,612 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2023-05-09 12:24:43,612 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2023-05-09 12:24:43,613 easyblock.py:2091 INFO Using /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/ as start dir | |
| == 2023-05-09 12:24:43,613 build_log.py:267 INFO ... (took 1 secs) | |
| == 2023-05-09 12:24:43,613 build_log.py:267 INFO configuring... | |
| == 2023-05-09 12:24:43,614 easyblock.py:3901 INFO Starting configure step | |
| == 2023-05-09 12:24:43,614 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:24:43,615 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:24:43,615 hooks.py:193 INFO Found pre_configure_hook hook | |
| == 2023-05-09 12:24:43,615 hooks.py:225 INFO Running 'pre_configure_hook' hook function (arguments: [<easybuild.easyblocks.matlab.EB_MATLAB object at 0x7f5d683aa5b0>])... | |
| == 2023-05-09 12:24:43,616 easyblock.py:3909 INFO Running method configure_step part of step configure | |
| == 2023-05-09 12:24:43,617 filetools.py:2431 INFO /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/installer_input.txt copied to /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/my_installer_input.txt | |
| == 2023-05-09 12:24:43,618 filetools.py:1770 INFO Adjusting permissions recursively for /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/my_installer_input.txt | |
| == 2023-05-09 12:24:43,620 filetools.py:249 INFO Overwriting existing file /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/my_installer_input.txt | |
| == 2023-05-09 12:24:43,670 build_log.py:267 INFO building... | |
| == 2023-05-09 12:24:43,671 easyblock.py:3901 INFO Starting build step | |
| == 2023-05-09 12:24:43,671 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:24:43,672 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:24:43,672 easyblock.py:3909 INFO Running method build_step part of step build | |
| == 2023-05-09 12:24:43,672 build_log.py:267 INFO testing... | |
| == 2023-05-09 12:24:43,673 easyblock.py:3901 INFO Starting test step | |
| == 2023-05-09 12:24:43,673 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:24:43,674 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:24:43,674 easyblock.py:3909 INFO Running method test_step part of step test | |
| == 2023-05-09 12:24:43,674 build_log.py:267 INFO installing... | |
| == 2023-05-09 12:24:43,675 easyblock.py:3901 INFO Starting install step | |
| == 2023-05-09 12:24:43,675 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:24:43,675 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:24:43,676 easyblock.py:3909 INFO Running method stage_install_step part of step install | |
| == 2023-05-09 12:24:43,676 easyblock.py:3909 INFO Running method make_installdir part of step install | |
| == 2023-05-09 12:24:43,678 easyblock.py:1122 INFO Found old directory /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| == 2023-05-09 12:52:05,768 filetools.py:384 INFO Path /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 successfully removed. | |
| == 2023-05-09 12:52:05,769 easyblock.py:1130 INFO Removed old directory /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| == 2023-05-09 12:52:05,770 filetools.py:1918 INFO Creating directory /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 (parents: True, set_gid: False, sticky: False) | |
| == 2023-05-09 12:52:05,773 easyblock.py:3909 INFO Running method install_step part of step install | |
| == 2023-05-09 12:52:05,774 filetools.py:1770 INFO Adjusting permissions recursively for /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/install | |
| == 2023-05-09 12:52:05,775 filetools.py:1770 INFO Adjusting permissions recursively for /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/bin/glnxa64 | |
| == 2023-05-09 12:52:05,804 matlab.py:172 INFO Installing MATLAB with key 1 of 1 | |
| == 2023-05-09 12:52:05,804 filetools.py:249 INFO Overwriting existing file /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/my_installer_input.txt | |
| == 2023-05-09 12:52:05,805 run.py:236 INFO running cmd: export _JAVA_OPTIONS="-Xmx2048m" && /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/install -inputFile /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/my_installer_input.txt | |
| == 2023-05-09 12:52:11,959 run.py:648 INFO cmd "export _JAVA_OPTIONS="-Xmx2048m" && /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/install -inputFile /tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/my_installer_input.txt " exited with exit code 0 and output: | |
| == 2023-05-09 12:52:11,961 build_log.py:267 INFO ... (took 27 mins 28 secs) | |
| == 2023-05-09 12:52:11,961 build_log.py:267 INFO taking care of extensions... | |
| == 2023-05-09 12:52:11,961 easyblock.py:3901 INFO Starting extensions step | |
| == 2023-05-09 12:52:11,962 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:52:11,963 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:52:11,963 easyblock.py:3909 INFO Running method extensions_step part of step extensions | |
| == 2023-05-09 12:52:11,964 build_log.py:267 INFO restore after iterating... | |
| == 2023-05-09 12:52:11,964 easyblock.py:3901 INFO Starting postiter step | |
| == 2023-05-09 12:52:11,964 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:52:11,965 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:52:11,965 easyblock.py:3909 INFO Running method post_iter_step part of step postiter | |
| == 2023-05-09 12:52:11,966 build_log.py:267 INFO postprocessing... | |
| == 2023-05-09 12:52:11,966 easyblock.py:3901 INFO Starting postproc step | |
| == 2023-05-09 12:52:11,966 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:52:11,967 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:52:11,967 easyblock.py:3909 INFO Running method post_install_step part of step postproc | |
| == 2023-05-09 12:52:11,968 easyblock.py:2902 INFO Path to 'env' command to use in patched shebang lines: /usr/bin/env | |
| == 2023-05-09 12:52:11,971 build_log.py:267 INFO sanity checking... | |
| == 2023-05-09 12:52:11,971 easyblock.py:3901 INFO Starting sanitycheck step | |
| == 2023-05-09 12:52:11,971 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-05-09 12:52:11,971 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='matlab', builddir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3', github_account='matlab', installdir='/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3', module_name='MATLAB/2022b-r3', name='MATLAB', nameletter='M', nameletterlower='m', namelower='matlab', parallel='16', start_dir='/tmp/heilukas/easybuild/MATLAB/2022b/system-system-r3/', toolchain_name='system', toolchain_version='system', version='2022b', version_major='2022b', versionprefix='', versionsuffix='-r3' | |
| == 2023-05-09 12:52:11,972 easyblock.py:3909 INFO Running method sanity_check_step part of step sanitycheck | |
| == 2023-05-09 12:52:11,972 easyblock.py:3307 INFO Using customized sanity check paths: {'files': ['bin/matlab', 'bin/glnxa64/MATLAB', 'toolbox/local/classpath.txt'], 'dirs': ['java/jar']} | |
| == 2023-05-09 12:52:11,973 easyblock.py:3558 WARNING Sanity check: no file found at 'bin/matlab' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| == 2023-05-09 12:52:11,973 easyblock.py:3558 WARNING Sanity check: no file found at 'bin/glnxa64/MATLAB' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| == 2023-05-09 12:52:11,973 easyblock.py:3558 WARNING Sanity check: no file found at 'toolbox/local/classpath.txt' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| == 2023-05-09 12:52:11,974 easyblock.py:3558 WARNING Sanity check: no (non-empty) directory found at 'java/jar' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| == 2023-05-09 12:52:11,974 easyblock.py:1678 INFO Loading fake module (MATLAB/2022b-r3) | |
| == 2023-05-09 12:52:12,079 easyblock.py:1594 INFO Only retaining paths for CMAKE_PREFIX_PATH that contain at least one file: [''] -> [] | |
| == 2023-05-09 12:52:12,084 filetools.py:1918 INFO Creating directory /tmp/eb-ppl4dd8_/tmprbt_xzp2/all/Core/MATLAB (parents: True, set_gid: False, sticky: False) | |
| == 2023-05-09 12:52:12,085 easyblock.py:3717 INFO Module file /tmp/eb-ppl4dd8_/tmprbt_xzp2/all/Core/MATLAB/2022b-r3.lua written: help([==[ | |
| Description | |
| =========== | |
| MATLAB is a high-level language and interactive environment | |
| that enables you to perform computationally intensive tasks faster than with | |
| traditional programming languages such as C, C++, and Fortran. | |
| More information | |
| ================ | |
| - Homepage: https://www.mathworks.com/products/matlab | |
| ]==]) | |
| whatis([==[Description: MATLAB is a high-level language and interactive environment | |
| that enables you to perform computationally intensive tasks faster than with | |
| traditional programming languages such as C, C++, and Fortran.]==]) | |
| whatis([==[Homepage: https://www.mathworks.com/products/matlab]==]) | |
| whatis([==[URL: https://www.mathworks.com/products/matlab]==]) | |
| local root = "/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3" | |
| conflict("MATLAB") | |
| setenv("EBROOTMATLAB", root) | |
| setenv("EBVERSIONMATLAB", "2022b") | |
| setenv("EBDEVELMATLAB", pathJoin(root, "easybuild/Core-MATLAB-2022b-r3-easybuild-devel")) | |
| prepend_path("PATH", root) | |
| prepend_path("LD_LIBRARY_PATH", pathJoin(root, "runtime/glnxa64")) | |
| prepend_path("LD_LIBRARY_PATH", pathJoin(root, "bin/glnxa64")) | |
| prepend_path("LD_LIBRARY_PATH", pathJoin(root, "sys/os/glnxa64")) | |
| setenv("_JAVA_OPTIONS", "-Xmx2048m") | |
| -- Built with EasyBuild version 4.7.1 | |
| == 2023-05-09 12:52:12,085 easyblock.py:3748 INFO Skipping devel module... | |
| == 2023-05-09 12:52:12,086 filetools.py:339 INFO Symlinked 2022b-r3.lua to /tmp/eb-ppl4dd8_/tmprbt_xzp2/all/Core/MATLAB/default | |
| == 2023-05-09 12:52:12,086 module_generator.py:1512 INFO Module default version file written to point to /tmp/eb-ppl4dd8_/tmprbt_xzp2/all/Core/MATLAB/default | |
| == 2023-05-09 12:52:12,174 environment.py:93 INFO Environment variable MODULEPATH set to /sw/easybuild/amd/k10/2022b/modules/all:/sw/easybuild/amd/k10/2022b/modules/all/Core (previous value: '/tmp/eb-ppl4dd8_/tmprbt_xzp2/all/Core:/sw/easybuild/amd/k10/2022b/modules/all:/sw/easybuild/amd/k10/2022b/modules/all/Core') | |
| == 2023-05-09 12:52:12,175 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_MODULEPATH set to /sw/easybuild/amd/k10/2022b/modules/all:1;/sw/easybuild/amd/k10/2022b/modules/all/Core:1 (previous value: '/tmp/eb-ppl4dd8_/tmprbt_xzp2/all/Core:1;/sw/easybuild/amd/k10/2022b/modules/all:1;/sw/easybuild/amd/k10/2022b/modules/all/Core:1') | |
| == 2023-05-09 12:52:12,175 environment.py:93 INFO Environment variable _ModuleTable001_ set to X01vZHVsZVRhYmxlXyA9IHsKTVR2ZXJzaW9uID0gMywKY19yZWJ1aWxkVGltZSA9IGZhbHNlLApjX3Nob3J0VGltZSA9IGZhbHNlLApkZXB0aFQgPSB7fSwKZmFtaWx5ID0ge30sCm1UID0ge30sCm1wYXRoQSA9IHsKIi9zdy9lYXN5YnVpbGQvYW1kL2sxMC8yMDIyYi9tb2R1bGVzL2FsbCIsICIvc3cvZWFzeWJ1aWxkL2FtZC9rMTAvMjAyMmIvbW9kdWxlcy9hbGwvQ29yZSIsCn0sCnN5c3RlbUJhc2VNUEFUSCA9ICIvc3cvZWFzeWJ1aWxkL2FtZC9rMTAvMjAyMmIvbW9kdWxlcy9hbGw6L3N3L2Vhc3lidWlsZC9hbWQvazEwLzIwMjJiL21vZHVsZXMvYWxsL0NvcmUiLAp9Cg== (previous value: 'X01vZHVsZVRhYmxlXyA9IHsKTVR2ZXJzaW9uID0gMywKY19yZWJ1aWxkVGltZSA9IGZhbHNlLApjX3Nob3J0VGltZSA9IGZhbHNlLApkZXB0aFQgPSB7fSwKZmFtaWx5ID0ge30sCm1UID0ge30sCm1wYXRoQSA9IHsKIi90bXAvZWItcHBsNGRkOF8vdG1wcmJ0X3h6cDIvYWxsL0NvcmUiLCAiL3N3L2Vhc3lidWlsZC9hbWQvazEwLzIwMjJiL21vZHVsZXMvYWxsIiwgIi9zdy9lYXN5YnVpbGQvYW1kL2sxMC8yMDIyYi9tb2R1bGVzL2FsbC9Db3JlIiwKfSwKc3lzdGVtQmFzZU1QQVRIID0gIi9zdy9lYXN5YnVpbGQvYW1kL2sxMC8yMDIyYi9tb2R1bGVzL2FsbDovc3cvZWFzeWJ1aWxkL2FtZC9rMTAvMjAyMmIvbW9kdWxlcy9hbGwvQ29yZSIsCn0K') | |
| == 2023-05-09 12:52:12,177 modules.py:472 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/eb-ppl4dd8_/tmprbt_xzp2/all/Core:/sw/easybuild/amd/k10/2022b/modules/all:/sw/easybuild/amd/k10/2022b/modules/all/Core | |
| == 2023-05-09 12:52:12,595 easyblock.py:3179 INFO Checking for banned/required linked shared libraries... | |
| == 2023-05-09 12:52:12,595 easyblock.py:3197 INFO No banned/required libraries specified | |
| == 2023-05-09 12:52:12,693 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3/sys/os/glnxa64:/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3/bin/glnxa64:/sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3/runtime/glnxa64 (previously undefined) | |
| == 2023-05-09 12:52:12,697 filetools.py:384 INFO Path /tmp/eb-ppl4dd8_/tmprbt_xzp2 successfully removed. | |
| == 2023-05-09 12:52:12,698 environment.py:93 INFO Environment variable MODULEPATH set to /sw/easybuild/amd/k10/2022b/modules/all:/sw/easybuild/amd/k10/2022b/modules/all/Core (previous value: '/sw/easybuild/amd/k10/2022b/modules/all/Core:/sw/easybuild/amd/k10/2022b/modules/all') | |
| == 2023-05-09 12:52:12,698 environment.py:93 INFO Environment variable __LMOD_REF_COUNT_MODULEPATH set to /sw/easybuild/amd/k10/2022b/modules/all:1;/sw/easybuild/amd/k10/2022b/modules/all/Core:1 (previous value: '/sw/easybuild/amd/k10/2022b/modules/all/Core:1;/tmp/eb-ppl4dd8_/tmprbt_xzp2/all/Core:1;/sw/easybuild/amd/k10/2022b/modules/all:1') | |
| == 2023-05-09 12:52:12,698 environment.py:93 INFO Environment variable _ModuleTable001_ set to X01vZHVsZVRhYmxlXyA9IHsKTVR2ZXJzaW9uID0gMywKY19yZWJ1aWxkVGltZSA9IGZhbHNlLApjX3Nob3J0VGltZSA9IGZhbHNlLApkZXB0aFQgPSB7fSwKZmFtaWx5ID0ge30sCm1UID0ge30sCm1wYXRoQSA9IHsKIi9zdy9lYXN5YnVpbGQvYW1kL2sxMC8yMDIyYi9tb2R1bGVzL2FsbCIsICIvc3cvZWFzeWJ1aWxkL2FtZC9rMTAvMjAyMmIvbW9kdWxlcy9hbGwvQ29yZSIsCn0sCnN5c3RlbUJhc2VNUEFUSCA9ICIvc3cvZWFzeWJ1aWxkL2FtZC9rMTAvMjAyMmIvbW9kdWxlcy9hbGw6L3N3L2Vhc3lidWlsZC9hbWQvazEwLzIwMjJiL21vZHVsZXMvYWxsL0NvcmUiLAp9Cg== (previous value: 'X01vZHVsZVRhYmxlXyA9IHsKTVR2ZXJzaW9uID0gMywKY19yZWJ1aWxkVGltZSA9IGZhbHNlLApjX3Nob3J0VGltZSA9IGZhbHNlLApkZXB0aFQgPSB7fSwKZmFtaWx5ID0ge30sCm1UID0ge30sCm1wYXRoQSA9IHsKIi9zdy9lYXN5YnVpbGQvYW1kL2sxMC8yMDIyYi9tb2R1bGVzL2FsbC9Db3JlIiwgIi90bXAvZWItcHBsNGRkOF8vdG1wcmJ0X3h6cDIvYWxsL0NvcmUiLCAiL3N3L2Vhc3lidWlsZC9hbWQvazEwLzIwMjJiL21vZHVsZXMvYWxsIiwKfSwKc3lzdGVtQmFzZU1QQVRIID0gIi9zdy9lYXN5YnVpbGQvYW1kL2sxMC8yMDIyYi9tb2R1bGVzL2FsbDovc3cvZWFzeWJ1aWxkL2FtZC9rMTAvMjAyMmIvbW9kdWxlcy9hbGwvQ29yZSIsCn0K') | |
| == 2023-05-09 12:52:12,699 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2023-05-09 12:52:12,699 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2023-05-09 12:52:12,955 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): Sanity check failed: no file found at 'bin/matlab' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| no file found at 'bin/glnxa64/MATLAB' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| no file found at 'toolbox/local/classpath.txt' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| no (non-empty) directory found at 'java/jar' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 (at easybuild/framework/easyblock.py:3614 in _sanity_check_step) | |
| == 2023-05-09 12:52:12,956 filetools.py:2019 INFO Removing lock /sw/easybuild/amd/k10/2022b/software/.locks/_sw_easybuild_amd_k10_2022b_software_MATLAB_2022b-r3.lock... | |
| == 2023-05-09 12:52:12,971 filetools.py:384 INFO Path /sw/easybuild/amd/k10/2022b/software/.locks/_sw_easybuild_amd_k10_2022b_software_MATLAB_2022b-r3.lock successfully removed. | |
| == 2023-05-09 12:52:12,971 filetools.py:2023 INFO Lock removed: /sw/easybuild/amd/k10/2022b/software/.locks/_sw_easybuild_amd_k10_2022b_software_MATLAB_2022b-r3.lock | |
| == 2023-05-09 12:52:12,972 easyblock.py:4232 WARNING build failed (first 300 chars): Sanity check failed: no file found at 'bin/matlab' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| no file found at 'bin/glnxa64/MATLAB' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b-r3 | |
| no file found at 'toolbox/local/classpath.txt' in /sw/easybuild/amd/k10/2022b/software/MATLAB/2022b | |
| == 2023-05-09 12:52:12,973 easyblock.py:328 INFO Closing log for application name MATLAB version 2022b |
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