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@54mu
54mu / genomes.txt
Created April 26, 2022 12:54
list of gisaid genomes with Spike_ins213VGGG (with collection date, low quality excluded and complete) up to 2022-04-19
hCoV-19/England/MILK-372230F/2022
hCoV-19/England/LSPA-374C1D8/2022
hCoV-19/England/LSPA-37CE314/2022
hCoV-19/England/LSPA-37D7521/2022
hCoV-19/England/LSPA-37DE6AF/2022
hCoV-19/England/MILK-37E6307/2022
hCoV-19/England/MILK-37D317C/2022
hCoV-19/England/LSPA-37D2AEB/2022
hCoV-19/England/LSPA-37A884E/2022
hCoV-19/England/ALDP-380B787/2022

Extended materials and methods

software list

Sequence retrieval

The complete collection of SARS-CoV2 genomes and relative metadata were downloaded from gisaid in date 2020-04-05.

Data preparation

@54mu
54mu / chroms.csv
Last active February 7, 2022 13:46
chroms.csv
name size
CM034358.1 98626226
CM034359.1 90301668
CM034360.1 130508752
CM034361.1 125276673
CM034362.1 97315131
CM034349.1 143812365
CM034350.1 124612239
CM034351.1 118732772
CM034352.1 116589102
@54mu
54mu / colors.csv
Last active January 17, 2023 18:59
Specification Keyword RGB hex value
CSS Level 1 black #000000
CSS Level 1 silver #c0c0c0
CSS Level 1 gray #808080
CSS Level 1 white #ffffff
CSS Level 1 maroon #800000
CSS Level 1 red #ff0000
CSS Level 1 purple #800080
CSS Level 1 fuchsia #ff00ff
CSS Level 1 green #008000