My first CXF service

beans.xml

<beans xmlns="http://www.springframework.org/schema/beans"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xmlns:jaxws="http://cxf.apache.org/jaxws"
       xsi:schemaLocation="
       http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd
       http://cxf.apache.org/jaxws http://cxf.apache.org/schemas/jaxws.xsd">
   
   <import resource="classpath:META-INF/cxf/cxf.xml" />
   <import resource="classpath:META-INF/cxf/cxf-extension-soap.xml" />
   <import resource="classpath:META-INF/cxf/cxf-servlet.xml" />
   
   <bean id="translateStd" class="bio.TranslateImpl" 
         init-method="initIt" destroy-method="cleanUp">
      <property name="ncbiString">
         <value>FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG</value>
      </property>
   </bean>
   
   <bean id="translateMit" class="bio.TranslateImpl" 
         init-method="initIt" destroy-method="cleanUp">
      <property name="ncbiString">
         <value>FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG</value>
      </property>
   </bean>
   
   <jaxws:endpoint
                  id="translateStdEndPoint"
                  implementor="#translateStd"
                  address="/translateStd" />
   <jaxws:endpoint
                  id="translateMitEndPoint"
                  implementor="#translateMit"
                  address="/translateMit" />
</beans>

Makefile

cxf.lib=apache-cxf-2.3.1/lib
all:
	mkdir -p translate/WEB-INF/lib
	javac -d translate/WEB-INF/classes -sourcepath translate/WEB-INF/classes translate/WEB-INF/classes/bio/TranslateImpl.java
	cp 	${cxf.lib}/cxf-2.3.1.jar \
		${cxf.lib}/geronimo-activation_1.1_spec-1.1.jar \
		${cxf.lib}/geronimo-annotation_1.0_spec-1.1.1.jar \
		${cxf.lib}/geronimo-javamail_1.4_spec-1.7.1.jar \
		${cxf.lib}/geronimo-servlet_3.0_spec-1.0.jar \
		${cxf.lib}/geronimo-ws-metadata_2.0_spec-1.1.3.jar \
		${cxf.lib}/geronimo-jaxws_2.2_spec-1.0.jar \
		${cxf.lib}/geronimo-stax-api_1.0_spec-1.0.1.jar \
		${cxf.lib}/jaxb-api-2.2.1.jar \
		${cxf.lib}/jaxb-impl-2.2.1.1.jar \
		${cxf.lib}/neethi-2.0.4.jar \
		${cxf.lib}/saaj-api-1.3.jar \
		${cxf.lib}/saaj-impl-1.3.2.jar \
		${cxf.lib}/wsdl4j-1.6.2.jar \
		${cxf.lib}/XmlSchema-1.4.7.jar \
		${cxf.lib}/xml-resolver-1.2.jar  \
		${cxf.lib}/aopalliance-1.0.jar \
		${cxf.lib}/spring-core-3.0.5.RELEASE.jar \
		${cxf.lib}/spring-beans-3.0.5.RELEASE.jar \
		${cxf.lib}/spring-context-3.0.5.RELEASE.jar \
		${cxf.lib}/spring-web-3.0.5.RELEASE.jar \
		${cxf.lib}/commons-logging-1.1.1.jar  \
		${cxf.lib}/spring-asm-3.0.5.RELEASE.jar \
		${cxf.lib}/spring-expression-3.0.5.RELEASE.jar \
		${cxf.lib}/spring-aop-3.0.5.RELEASE.jar \
		translate/WEB-INF/lib
	jar cvf translate.war -C translate .
	mv translate.war ~/srv/tomcat/webapps
client0:
	mkdir -p client
	#apache-cxf-2.3.1/bin/wsdl2java -client -p generated -d client -impl http://localhost:8080/translate/translate?wsdl
	javac -d client -sourcepath client client/MyClient.java client/generated/*.java
	java -cp client MyClient
client1:
	javac -d translate/WEB-INF/classes -sourcepath translate/WEB-INF/classes translate/WEB-INF/classes/bio/TranslateClient.java
	java -cp translate/WEB-INF/classes bio.TranslateClient

MyClient.java

import generated.*;
public class MyClient
   {
    public static void main(String args[]) throws Exception
      {
     TranslateService service=new TranslateService();
      Translate tr=service.getTranslatePort();
      System.out.println(tr.translate("GAATTCATCGATCATAGCATTgcatgctagc"));
      }
   }

structure.txt

./translate
./translate/WEB-INF
./translate/WEB-INF/lib
./translate/WEB-INF/beans.xml
./translate/WEB-INF/web.xml
./translate/WEB-INF/classes/bio/TranslateClient.java
./translate/WEB-INF/classes/bio/TranslateImpl.java
./translate/WEB-INF/classes/bio/Translate.java
client/
client/generated/
client/MyClient.java
Makefile

Translate.java

package bio;
import javax.jws.WebParam;
import javax.jws.WebResult;
import javax.jws.WebService;

@WebService
public interface Translate
   {
   @WebResult(name="protein")
   public String translate(@WebParam(name = "dna")String dna);
   }

TranslateClient.java

package bio;
import bio.Translate;
import javax.xml.namespace.QName;
import javax.xml.ws.Service;
import javax.xml.ws.soap.SOAPBinding;
import java.net.URL;

public class TranslateClient
   {
   public static void main(String args[]) throws Exception
      {
     URL wsdlURL = new URL("http://localhost:8080/translate/translate?wsdl");
     Service service = Service.create(wsdlURL, new QName("http://bio/","TranslateService"));
      Translate hw = service.getPort(Translate.class);
      System.err.println(hw.translate("ATGATCGCATGCATGCATGTACGAC"));

      }
   }

TranslateImpl.java

package bio;
import javax.jws.WebService;
@WebService(endpointInterface = "bio.Translate",serviceName = "TranslateService",name="Translate")
public class TranslateImpl
   implements Translate
   {
   /** see http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi */
   private String ncbiString=null;

   public void setNcbiString(String ncbiString)
      {
      this.ncbiString=ncbiString;
      }
      
    public String getNcbiString()
      {
      return this.ncbiString;
      }

   @Override
   public String translate(String text)
      {
      StringBuilder pep=new StringBuilder(text.length()/3);
      for(int i=0;i+2< text.length();i+=3)
         {
         pep.append(translate(text.charAt(i),text.charAt(i+1),text.charAt(i+2)));
         }
      return pep.toString();
      }
      
   private static int base2index(char c)
      {
      switch(Character.toLowerCase(c))
         {
         case 't':case 'u': return 0;
         case 'c': return 1;
         case 'a': return 2;
         case 'g': return 3;
         default: return -1;
         }
      }

   private char translate(char a,char b,char c)
      {
      int base1= base2index(a);
      int base2= base2index(b);
      int base3= base2index(c);
      if(base1==-1 || base2==-1 || base3==-1)
         {
         return '?';
         }
      else
         {
         return getNcbiString().charAt(base1*16+base2*4+base3);
         }
      }
      
   public void initIt()
      {
      System.err.println("Init called");
      }
      
   public void cleanUp()
      {
      System.err.println("Cleanup called");
      } 
   }

translateStd.wsdl

<?xml version="1.0" ?><wsdl:definitions name="TranslateService" targetNamespace="http://bio/" xmlns:ns1="http://schemas.xmlsoap.org/soap/http" xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/" xmlns:tns="http://bio/" xmlns:wsdl="http://schemas.xmlsoap.org/wsdl/" xmlns:xsd="http://www.w3.org/2001/XMLSchema">
  <wsdl:types>
<xsd:schema attributeFormDefault="unqualified" elementFormDefault="unqualified" targetNamespace="http://bio/" xmlns:tns="http://bio/" xmlns:xsd="http://www.w3.org/2001/XMLSchema">
  <xsd:element name="translate" type="tns:translate"></xsd:element>
  <xsd:complexType name="translate">
    <xsd:sequence>
      <xsd:element minOccurs="0" name="dna" type="xsd:string"></xsd:element>
    </xsd:sequence>
  </xsd:complexType>
  <xsd:element name="translateResponse" type="tns:translateResponse"></xsd:element>

  <xsd:complexType name="translateResponse">
    <xsd:sequence>
      <xsd:element minOccurs="0" name="protein" type="xsd:string"></xsd:element>
    </xsd:sequence>
  </xsd:complexType>
</xsd:schema>
  </wsdl:types>
  <wsdl:message name="translate">
    <wsdl:part element="tns:translate" name="parameters">

    </wsdl:part>
  </wsdl:message>
  <wsdl:message name="translateResponse">
    <wsdl:part element="tns:translateResponse" name="parameters">
    </wsdl:part>
  </wsdl:message>
  <wsdl:portType name="Translate">
    <wsdl:operation name="translate">
      <wsdl:input message="tns:translate" name="translate">

    </wsdl:input>
      <wsdl:output message="tns:translateResponse" name="translateResponse">
    </wsdl:output>
    </wsdl:operation>
  </wsdl:portType>
  <wsdl:binding name="TranslateServiceSoapBinding" type="tns:Translate">
    <soap:binding style="document" transport="http://schemas.xmlsoap.org/soap/http"></soap:binding>
    <wsdl:operation name="translate">
      <soap:operation soapAction="" style="document"></soap:operation>

      <wsdl:input name="translate">
        <soap:body use="literal"></soap:body>
      </wsdl:input>
      <wsdl:output name="translateResponse">
        <soap:body use="literal"></soap:body>
      </wsdl:output>
    </wsdl:operation>
  </wsdl:binding>
  <wsdl:service name="TranslateService">

    <wsdl:port binding="tns:TranslateServiceSoapBinding" name="TranslatePort">
      <soap:address location="http://localhost:8080/translate/translateStd"></soap:address>
    </wsdl:port>
  </wsdl:service>
</wsdl:definitions>

web.xml

<?xml  version="1.0" encoding="UTF-8"?>
<web-app>
   <context-param>
      <param-name>contextConfigLocation</param-name>
      <param-value>WEB-INF/beans.xml</param-value>
   </context-param>
   
   <listener>
      <listener-class>
         org.springframework.web.context.ContextLoaderListener
      </listener-class>
   </listener>
   
   <servlet>
      <servlet-name>CXFServlet</servlet-name>
      <display-name>CXF Servlet</display-name>
      <servlet-class> org.apache.cxf.transport.servlet.CXFServlet</servlet-class>
      <load-on-startup>1</load-on-startup>
   </servlet>
   
   <servlet-mapping>
      <servlet-name>CXFServlet</servlet-name>
      <url-pattern>/*</url-pattern>
   </servlet-mapping>
</web-app>