with include{MyTest}
Cannot find a component with name 'MyTest' in module: .../20230103.nf.class/./class.nf
-- Check script 'test.nf' at line: 2 or see '.nextflow.log' file for more details
without include{MyTest}
/* author Pierre Lindenbaum */ | |
params.vcfs="NO_FILE" | |
params.samples="NO_FILE" | |
workflow { | |
each_vcf = Channel.fromPath(params.vcfs).splitText().map{it.trim()} | |
c2vcf = CHROMS_IN_VCF(each_vcf) |
with include{MyTest}
Cannot find a component with name 'MyTest' in module: .../20230103.nf.class/./class.nf
-- Check script 'test.nf' at line: 2 or see '.nextflow.log' file for more details
without include{MyTest}
CC?=gcc | |
ifeq ($(HTSLIB),) | |
$(error undefined $$HTSLIB) | |
endif | |
CFLAGS= -Wall -O3 -I$(HTSLIB) | |
LDFLAGS= -L$(HTSLIB) -lz -lhts | |
import java.io.*; | |
import java.util.*; | |
public class Biostar9532375 { | |
private static class Sequence { | |
String name; | |
StringBuilder seq=new StringBuilder(); | |
boolean same(char c1,char c2) { | |
if(c1==c2) return true; | |
if(c1=='N' || c2=='N') return true; | |
return false; |
#include <stdio.h> | |
#include <string.h> | |
#include <stdlib.h> | |
#include <ctype.h> | |
#define MAX_SEQ_LENGTH 100 | |
static char compl(char c) { | |
switch(c) { | |
case 'A': return 'T'; |
find path/to/dir -type f -name "S*.vcf.gz" > jeter.list
nextflow run --vcfs ${PWD}/jeter.list biostar9526718.nf
add -C config.cfg
toconfigure your cluster config....
nextflow.enable.dsl=2 | |
params.vcf="" | |
workflow { | |
picard = downloadPicard() | |
samples_ch = vcf2samples(params.vcf).splitCsv(header: false,sep:'\t',strip:true) | |
pair_ch = samples_ch.combine(samples_ch).filter{T->!T[1].equals(T[3])} | |
concordances_ch = concordance(picard,pair_ch) |
nextflow.enable.dsl=2 | |
/* full path to query directory */ | |
params.qdir="/DIR1" | |
/* full path to target/database directory */ | |
params.tdir="/DIR2" | |
workflow { |
#!/bin/bash | |
# https://github.community/t/how-to-create-full-release-from-command-line-not-just-a-tag/916/2 | |
if [ "$#" -ne 2 ]; then | |
echo "Expected: 'version' 'message'" | |
exit -1 | |
fi |