Created
January 16, 2011 16:28
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\secnumdepth 3 | |
\tocdepth 3 | |
\paragraph_separation indent | |
\defskip medskip | |
\quotes_language english | |
\papercolumns 1 | |
\papersides 1 | |
\paperpagestyle default | |
\tracking_changes false | |
\output_changes false | |
\author "" | |
\author "" | |
\end_header | |
\begin_body | |
\begin_layout Standard | |
\begin_inset Flex Sweave Options | |
status open | |
\begin_layout Plain Layout | |
externalize=TRUE,pdf=FALSE,eps=FALSE | |
\end_layout | |
\end_inset | |
\end_layout | |
\begin_layout Scrap | |
<<setup, echo=FALSE>>= | |
\end_layout | |
\begin_layout Scrap | |
options(keep.blank.line=FALSE) | |
\end_layout | |
\begin_layout Scrap | |
@ | |
\end_layout | |
\begin_layout Scrap | |
\end_layout | |
\begin_layout Standard | |
\begin_inset Float figure | |
placement bh | |
wide false | |
sideways false | |
status open | |
\begin_layout Scrap | |
<<Code, tidy=T>>= | |
\end_layout | |
\begin_layout Scrap | |
require(ggplot2) | |
\end_layout | |
\begin_layout Scrap | |
df=data.frame(x = c(0,1) ,y = c(1,10) ) | |
\end_layout | |
\begin_layout Scrap | |
Graph=qplot(x,y,data=df)+scale_y_log10() | |
\end_layout | |
\begin_layout Scrap | |
@ | |
\end_layout | |
\end_inset | |
\end_layout | |
\begin_layout Standard | |
\begin_inset Float figure | |
placement bh | |
wide false | |
sideways true | |
status open | |
\begin_layout ScrapCenter | |
<<echo=FALSE,fig=TRUE,width=10,height=7>>= | |
\end_layout | |
\begin_layout ScrapCenter | |
<<Code>> | |
\end_layout | |
\begin_layout ScrapCenter | |
print(Graph) | |
\end_layout | |
\begin_layout ScrapCenter | |
@ | |
\end_layout | |
\begin_layout Plain Layout | |
\begin_inset Caption | |
\begin_layout Plain Layout | |
\begin_inset CommandInset label | |
LatexCommand label | |
name "fig:pgfSweave" | |
\end_inset | |
Demonstration of | |
\family typewriter | |
pgfSweave | |
\family default | |
graphics not working with semilogy | |
\end_layout | |
\end_inset | |
\end_layout | |
\end_inset | |
\end_layout | |
\end_body | |
\end_document |
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chunk: setup | |
chunkprefix: demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10-setup | |
fig: | |
cacheDB: | |
time: 2011-01-16 17:54:53 | |
chunk: Code | |
chunkprefix: demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10-Code | |
fig: | |
cacheDB: | |
time: 2011-01-16 17:54:53 | |
chunk: demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10-003 | |
chunkprefix: demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10-003 | |
fig: demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10-003.tikz | |
cacheDB: | |
time: 2011-01-16 17:54:54 |
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\batchmode | |
\makeatletter | |
\def\input@path{{/home/andreas/Documents/Lyx/LyX-pgfSweave-demo//}} | |
\makeatother | |
\documentclass[english]{article} | |
\usepackage[T1]{fontenc} | |
\usepackage[latin9]{inputenc} | |
\usepackage[letterpaper]{geometry} | |
\geometry{verbose,tmargin=2cm,bmargin=2cm,lmargin=3cm,rmargin=3cm} | |
\usepackage{babel} | |
\usepackage{rotfloat} | |
\usepackage[unicode=true, pdfusetitle, | |
bookmarks=true,bookmarksnumbered=true,bookmarksopen=true,bookmarksopenlevel=2, | |
breaklinks=false,pdfborder={0 0 1},backref=false,colorlinks=false] | |
{hyperref} | |
\hypersetup{ | |
pdfstartview=FitH} | |
\makeatletter | |
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Textclass specific LaTeX commands. | |
\usepackage{tikz} | |
\usepackage[nogin,noae]{Sweave} | |
\DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
\DefineVerbatimEnvironment{Soutput}{Verbatim}{baselinestretch=1} | |
\DefineVerbatimEnvironment{Scode}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% User specified LaTeX commands. | |
%\usepackage{ae} | |
%\renewcommand{\rmdefault}{ppl} | |
%\renewcommand{\sfdefault}{aess} | |
%\renewcommand{\ttdefault}{aett} | |
\makeatother | |
\begin{document} | |
\SweaveOpts{externalize=TRUE,pdf=FALSE,eps=FALSE} | |
\begin{par} | |
<<setup, echo=FALSE>>= | |
options(keep.blank.line=FALSE) | |
@ | |
\end{par} | |
% | |
\begin{figure}[bh] | |
\begin{par} | |
<<Code, tidy=T>>= | |
require(ggplot2) | |
df=data.frame(x = c(0,1) ,y = c(1,10) ) | |
Graph=qplot(x,y,data=df)#+scale_y_log10() | |
@ | |
\end{par} | |
\end{figure} | |
% | |
\begin{sidewaysfigure} | |
\begin{center} | |
<<echo=FALSE,fig=TRUE,width=10,height=7>>= | |
<<Code>> | |
print(Graph) | |
@ | |
\end{center} | |
\caption{\label{fig:pgfSweave}Demonstration of \texttt{pgfSweave} graphics | |
not working with semilogy} | |
\end{sidewaysfigure} | |
\end{document} |
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[1] "UTF-8" | |
[2] "pgfSweave" | |
[3] "/home/andreas/Documents/Lyx/LyX-pgfSweave-demo" | |
[4] "/home/andreas/Documents/Lyx/tmp/lyx_tmpdir.M23192/lyx_tmpbuf4" | |
[5] "demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10.Rnw" | |
Loading required package: pgfSweave | |
Loading required package: stashR | |
Loading required package: methods | |
Loading required package: filehash | |
filehash: Simple key-value database (2.1-1 2010-10-04) | |
A Set of Tools for Administering SHared Repositories (0.3-3 2009-03-26) | |
Loading required package: tikzDevice | |
tikzDevice: A Device for R Graphics Output in PGF/TikZ Format (v0.5.3) | |
Checking for a LaTeX compiler... | |
A working LaTeX compiler was found by checking: | |
The PATH using the command pdflatex | |
Global option tikzLatex set to: | |
/usr/local/texlive/2010/bin/x86_64-linux/pdflatex | |
pdfTeX 3.1415926-1.40.11-2.2 (TeX Live 2010) | |
kpathsea version 6.0.0 | |
Loading required package: cacheSweave | |
Loading required package: getopt | |
Loading required package: highlight | |
Loading required package: tools | |
Loading required package: codetools | |
Loading required package: parser | |
Loading required package: Rcpp | |
pgfSweave: Using PGF Version 2.10 | |
Writing to file demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10.tex | |
Processing code chunks ... | |
1 : term verbatim (label=setup) | |
2 : echo highlight tidy term verbatim (label=Code) | |
Loading required package: ggplot2 | |
Loading required package: reshape | |
Loading required package: plyr | |
Attaching package: 'reshape' | |
The following object(s) are masked from 'package:plyr': | |
round_any | |
Loading required package: grid | |
Loading required package: proto | |
3 : term verbatim tikz | |
Error: chunk 3 | |
Error in grid.Call.graphics("L_text", as.graphicsAnnot(x$label), x$x, : | |
Metric information not available for this family/device | |
<unknown program name>(23424)/ ClientApp::doIt: Creating ClientApp | |
Error during wrapup: Take a look at the error log file: /home/andreas/Documents/Lyx/tmp/lyx_tmpdir.M23192/lyx_tmpbuf4/demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10.Rnw.log | |
Execution halted |
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\batchmode | |
\makeatletter | |
\def\input@path{{/home/andreas/Documents/Lyx/LyX-pgfSweave-demo//}} | |
\makeatother | |
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\usepackage[T1]{fontenc} | |
\usepackage[latin9]{inputenc} | |
\usepackage[letterpaper]{geometry} | |
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\usepackage{babel} | |
\usepackage{rotfloat} | |
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bookmarks=true,bookmarksnumbered=true,bookmarksopen=true,bookmarksopenlevel=2, | |
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{hyperref} | |
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pdfstartview=FitH} | |
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% | |
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% | |
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\end{scope} | |
\end{tikzpicture} |
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\batchmode | |
\makeatletter | |
\def\input@path{{/home/andreas/Documents/Lyx/LyX-pgfSweave-demo//}} | |
\makeatother | |
\documentclass[english]{article} | |
\usepackage[T1]{fontenc} | |
\usepackage[latin9]{inputenc} | |
\usepackage[letterpaper]{geometry} | |
\geometry{verbose,tmargin=2cm,bmargin=2cm,lmargin=3cm,rmargin=3cm} | |
\usepackage{babel} | |
\usepackage{rotfloat} | |
\usepackage[unicode=true, pdfusetitle, | |
bookmarks=true,bookmarksnumbered=true,bookmarksopen=true,bookmarksopenlevel=2, | |
breaklinks=false,pdfborder={0 0 1},backref=false,colorlinks=false] | |
{hyperref} | |
\hypersetup{ | |
pdfstartview=FitH} | |
\makeatletter | |
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Textclass specific LaTeX commands. | |
\usepackage{tikz} | |
\usepackage[nogin,noae]{Sweave} | |
\DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
\DefineVerbatimEnvironment{Soutput}{Verbatim}{baselinestretch=1} | |
\DefineVerbatimEnvironment{Scode}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% User specified LaTeX commands. | |
%\usepackage{ae} | |
%\renewcommand{\rmdefault}{ppl} | |
%\renewcommand{\sfdefault}{aess} | |
%\renewcommand{\ttdefault}{aett} | |
\makeatother | |
\begin{document} | |
\SweaveOpts{externalize=TRUE,pdf=FALSE,eps=FALSE} | |
\begin{par} | |
<<setup, echo=FALSE>>= | |
options(keep.blank.line=FALSE) | |
@ | |
\end{par} | |
% | |
\begin{figure}[bh] | |
\begin{par} | |
<<Code, tidy=T>>= | |
require(ggplot2) | |
df=data.frame(x = c(0,1) ,y = c(1,10) ) | |
Graph=qplot(x,y,data=df)# +scale_y_log10() | |
print(Graph) | |
@ | |
\end{par} | |
\end{figure} | |
% | |
\begin{sidewaysfigure} | |
\begin{center} | |
<<echo=FALSE,fig=TRUE,width=10,height=7>>= | |
<<Code>> | |
@ | |
\end{center} | |
\caption{\label{fig:pgfSweave}Demonstration of \texttt{pgfSweave} graphics | |
not working with semilogy} | |
\end{sidewaysfigure} | |
\end{document} |
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\batchmode | |
\makeatletter | |
\def\input@path{{/home/andreas/Documents/Lyx/LyX-pgfSweave-demo//}} | |
\makeatother | |
\documentclass[english]{article} | |
\usepackage[T1]{fontenc} | |
\usepackage[latin9]{inputenc} | |
\usepackage[letterpaper]{geometry} | |
\geometry{verbose,tmargin=2cm,bmargin=2cm,lmargin=3cm,rmargin=3cm} | |
\usepackage{babel} | |
\usepackage{rotfloat} | |
\usepackage[unicode=true, pdfusetitle, | |
bookmarks=true,bookmarksnumbered=true,bookmarksopen=true,bookmarksopenlevel=2, | |
breaklinks=false,pdfborder={0 0 1},backref=false,colorlinks=false] | |
{hyperref} | |
\hypersetup{ | |
pdfstartview=FitH} | |
\makeatletter | |
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Textclass specific LaTeX commands. | |
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\def\urltilda{\kern -.15em\lower .7ex\hbox{\~{}}\kern .04em}% | |
\newcommand{\hlstd}[1]{\textcolor[rgb]{0,0,0}{#1}}% | |
\newcommand{\hlnum}[1]{\textcolor[rgb]{0.16,0.16,1}{#1}} | |
\newcommand{\hlesc}[1]{\textcolor[rgb]{1,0,1}{#1}} | |
\newcommand{\hlstr}[1]{\textcolor[rgb]{1,0,0}{#1}} | |
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\usepackage[nogin,noae]{Sweave} | |
\DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% User specified LaTeX commands. | |
%\usepackage{ae} | |
%\renewcommand{\rmdefault}{ppl} | |
%\renewcommand{\sfdefault}{aess} | |
%\renewcommand{\ttdefault}{aett} | |
\makeatother | |
\pgfrealjobname{demo-LyX-pgfSweave-runs-without-ggplot-scales_y_log10} | |
\begin{document} | |
\begin{par} | |
\end{par} | |
% | |
\begin{figure}[bh] | |
\begin{par} | |
\hspace*{\fill}\\ | |
\hlstd{}\ttfamily\noindent | |
\hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlfunctioncall{require}\hlkeyword{(}\hlsymbol{ggplot2}\hlkeyword{)}\mbox{} | |
\normalfont | |
\hspace*{\fill}\\ | |
\hlstd{}\ttfamily\noindent | |
\hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlsymbol{df}{\ }\hlassignement{=}{\ }\hlfunctioncall{data.frame}\hlkeyword{(}\hlargument{x}{\ }\hlargument{=}{\ }\hlfunctioncall{c}\hlkeyword{(}\hlnumber{0}\hlkeyword{,}{\ }\hlnumber{1}\hlkeyword{)}\hlkeyword{,}{\ }\hlargument{y}{\ }\hlargument{=}{\ }\hlfunctioncall{c}\hlkeyword{(}\hlnumber{1}\hlkeyword{,}{\ }\hlnumber{10}\hlkeyword{)}\hlkeyword{)}\mbox{} | |
\normalfont | |
\hspace*{\fill}\\ | |
\hlstd{}\ttfamily\noindent | |
\hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlsymbol{Graph}{\ }\hlassignement{=}{\ }\hlfunctioncall{qplot}\hlkeyword{(}\hlsymbol{x}\hlkeyword{,}{\ }\hlsymbol{y}\hlkeyword{,}{\ }\hlargument{data}{\ }\hlargument{=}{\ }\hlsymbol{df}\hlkeyword{)}\mbox{} | |
\normalfont | |
\hspace*{\fill}\\ | |
\hlstd{}\ttfamily\noindent | |
\hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlfunctioncall{print}\hlkeyword{(}\hlsymbol{Graph}\hlkeyword{)}\mbox{} | |
\normalfont | |
\hspace*{\fill}\\ | |
\hlstd{} | |
\end{par} | |
\end{figure} | |
% | |
\begin{sidewaysfigure} | |
\begin{center} | |
\input{demo-LyX-pgfSweave-runs-without-ggplot-scales_y_log10-003.tikz} | |
\end{center} | |
\caption{\label{fig:pgfSweave}Demonstration of \texttt{pgfSweave} graphics | |
not working with semilogy} | |
\end{sidewaysfigure} | |
\end{document} |
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