Created
January 16, 2011 16:28
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Lyx-files to go with https://github.com/cameronbracken/pgfSweave/issues#issue/20
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| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.13,0.73,0.69} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.13,0.73,0.69} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.13,0.73,0.69} | |
| \end{scope} | |
| \end{tikzpicture} |
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| #LyX 1.6.8 created this file. For more info see http://www.lyx.org/ | |
| \lyxformat 345 | |
| \begin_document | |
| \begin_header | |
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| \defskip medskip | |
| \quotes_language english | |
| \papercolumns 1 | |
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| \paperpagestyle default | |
| \tracking_changes false | |
| \output_changes false | |
| \author "" | |
| \author "" | |
| \end_header | |
| \begin_body | |
| \begin_layout Standard | |
| \begin_inset Flex Sweave Options | |
| status open | |
| \begin_layout Plain Layout | |
| externalize=TRUE,pdf=FALSE,eps=FALSE | |
| \end_layout | |
| \end_inset | |
| \end_layout | |
| \begin_layout Scrap | |
| <<setup, echo=FALSE>>= | |
| \end_layout | |
| \begin_layout Scrap | |
| options(keep.blank.line=FALSE) | |
| \end_layout | |
| \begin_layout Scrap | |
| @ | |
| \end_layout | |
| \begin_layout Scrap | |
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| placement bh | |
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| sideways false | |
| status open | |
| \begin_layout Scrap | |
| <<Code, tidy=T>>= | |
| \end_layout | |
| \begin_layout Scrap | |
| require(ggplot2) | |
| \end_layout | |
| \begin_layout Scrap | |
| df=data.frame(x = c(0,1) ,y = c(1,10) ) | |
| \end_layout | |
| \begin_layout Scrap | |
| Graph=qplot(x,y,data=df)+scale_y_log10() | |
| \end_layout | |
| \begin_layout Scrap | |
| @ | |
| \end_layout | |
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| status open | |
| \begin_layout ScrapCenter | |
| <<echo=FALSE,fig=TRUE,width=10,height=7>>= | |
| \end_layout | |
| \begin_layout ScrapCenter | |
| <<Code>> | |
| \end_layout | |
| \begin_layout ScrapCenter | |
| print(Graph) | |
| \end_layout | |
| \begin_layout ScrapCenter | |
| @ | |
| \end_layout | |
| \begin_layout Plain Layout | |
| \begin_inset Caption | |
| \begin_layout Plain Layout | |
| \begin_inset CommandInset label | |
| LatexCommand label | |
| name "fig:pgfSweave" | |
| \end_inset | |
| Demonstration of | |
| \family typewriter | |
| pgfSweave | |
| \family default | |
| graphics not working with semilogy | |
| \end_layout | |
| \end_inset | |
| \end_layout | |
| \end_inset | |
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| \end_document |
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| chunk: setup | |
| chunkprefix: demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10-setup | |
| fig: | |
| cacheDB: | |
| time: 2011-01-16 17:54:53 | |
| chunk: Code | |
| chunkprefix: demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10-Code | |
| fig: | |
| cacheDB: | |
| time: 2011-01-16 17:54:53 | |
| chunk: demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10-003 | |
| chunkprefix: demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10-003 | |
| fig: demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10-003.tikz | |
| cacheDB: | |
| time: 2011-01-16 17:54:54 |
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| \batchmode | |
| \makeatletter | |
| \def\input@path{{/home/andreas/Documents/Lyx/LyX-pgfSweave-demo//}} | |
| \makeatother | |
| \documentclass[english]{article} | |
| \usepackage[T1]{fontenc} | |
| \usepackage[latin9]{inputenc} | |
| \usepackage[letterpaper]{geometry} | |
| \geometry{verbose,tmargin=2cm,bmargin=2cm,lmargin=3cm,rmargin=3cm} | |
| \usepackage{babel} | |
| \usepackage{rotfloat} | |
| \usepackage[unicode=true, pdfusetitle, | |
| bookmarks=true,bookmarksnumbered=true,bookmarksopen=true,bookmarksopenlevel=2, | |
| breaklinks=false,pdfborder={0 0 1},backref=false,colorlinks=false] | |
| {hyperref} | |
| \hypersetup{ | |
| pdfstartview=FitH} | |
| \makeatletter | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Textclass specific LaTeX commands. | |
| \usepackage{tikz} | |
| \usepackage[nogin,noae]{Sweave} | |
| \DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
| \DefineVerbatimEnvironment{Soutput}{Verbatim}{baselinestretch=1} | |
| \DefineVerbatimEnvironment{Scode}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% User specified LaTeX commands. | |
| %\usepackage{ae} | |
| %\renewcommand{\rmdefault}{ppl} | |
| %\renewcommand{\sfdefault}{aess} | |
| %\renewcommand{\ttdefault}{aett} | |
| \makeatother | |
| \begin{document} | |
| \SweaveOpts{externalize=TRUE,pdf=FALSE,eps=FALSE} | |
| \begin{par} | |
| <<setup, echo=FALSE>>= | |
| options(keep.blank.line=FALSE) | |
| @ | |
| \end{par} | |
| % | |
| \begin{figure}[bh] | |
| \begin{par} | |
| <<Code, tidy=T>>= | |
| require(ggplot2) | |
| df=data.frame(x = c(0,1) ,y = c(1,10) ) | |
| Graph=qplot(x,y,data=df)#+scale_y_log10() | |
| @ | |
| \end{par} | |
| \end{figure} | |
| % | |
| \begin{sidewaysfigure} | |
| \begin{center} | |
| <<echo=FALSE,fig=TRUE,width=10,height=7>>= | |
| <<Code>> | |
| print(Graph) | |
| @ | |
| \end{center} | |
| \caption{\label{fig:pgfSweave}Demonstration of \texttt{pgfSweave} graphics | |
| not working with semilogy} | |
| \end{sidewaysfigure} | |
| \end{document} |
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| [1] "UTF-8" | |
| [2] "pgfSweave" | |
| [3] "/home/andreas/Documents/Lyx/LyX-pgfSweave-demo" | |
| [4] "/home/andreas/Documents/Lyx/tmp/lyx_tmpdir.M23192/lyx_tmpbuf4" | |
| [5] "demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10.Rnw" | |
| Loading required package: pgfSweave | |
| Loading required package: stashR | |
| Loading required package: methods | |
| Loading required package: filehash | |
| filehash: Simple key-value database (2.1-1 2010-10-04) | |
| A Set of Tools for Administering SHared Repositories (0.3-3 2009-03-26) | |
| Loading required package: tikzDevice | |
| tikzDevice: A Device for R Graphics Output in PGF/TikZ Format (v0.5.3) | |
| Checking for a LaTeX compiler... | |
| A working LaTeX compiler was found by checking: | |
| The PATH using the command pdflatex | |
| Global option tikzLatex set to: | |
| /usr/local/texlive/2010/bin/x86_64-linux/pdflatex | |
| pdfTeX 3.1415926-1.40.11-2.2 (TeX Live 2010) | |
| kpathsea version 6.0.0 | |
| Loading required package: cacheSweave | |
| Loading required package: getopt | |
| Loading required package: highlight | |
| Loading required package: tools | |
| Loading required package: codetools | |
| Loading required package: parser | |
| Loading required package: Rcpp | |
| pgfSweave: Using PGF Version 2.10 | |
| Writing to file demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10.tex | |
| Processing code chunks ... | |
| 1 : term verbatim (label=setup) | |
| 2 : echo highlight tidy term verbatim (label=Code) | |
| Loading required package: ggplot2 | |
| Loading required package: reshape | |
| Loading required package: plyr | |
| Attaching package: 'reshape' | |
| The following object(s) are masked from 'package:plyr': | |
| round_any | |
| Loading required package: grid | |
| Loading required package: proto | |
| 3 : term verbatim tikz | |
| Error: chunk 3 | |
| Error in grid.Call.graphics("L_text", as.graphicsAnnot(x$label), x$x, : | |
| Metric information not available for this family/device | |
| <unknown program name>(23424)/ ClientApp::doIt: Creating ClientApp | |
| Error during wrapup: Take a look at the error log file: /home/andreas/Documents/Lyx/tmp/lyx_tmpdir.M23192/lyx_tmpbuf4/demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10.Rnw.log | |
| Execution halted |
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| \batchmode | |
| \makeatletter | |
| \def\input@path{{/home/andreas/Documents/Lyx/LyX-pgfSweave-demo//}} | |
| \makeatother | |
| \documentclass[english]{article} | |
| \usepackage[T1]{fontenc} | |
| \usepackage[latin9]{inputenc} | |
| \usepackage[letterpaper]{geometry} | |
| \geometry{verbose,tmargin=2cm,bmargin=2cm,lmargin=3cm,rmargin=3cm} | |
| \usepackage{babel} | |
| \usepackage{rotfloat} | |
| \usepackage[unicode=true, pdfusetitle, | |
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| \newcommand{\hlnum}[1]{\textcolor[rgb]{0.16,0.16,1}{#1}} | |
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| \usepackage[nogin,noae]{Sweave} | |
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| \DefineVerbatimEnvironment{Soutput}{Verbatim}{baselinestretch=1} | |
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| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% User specified LaTeX commands. | |
| %\usepackage{ae} | |
| %\renewcommand{\rmdefault}{ppl} | |
| %\renewcommand{\sfdefault}{aess} | |
| %\renewcommand{\ttdefault}{aett} | |
| \makeatother | |
| \pgfrealjobname{demo-LyX-pgfSweave-crashes-with-ggplot-scales_y_log10} | |
| \begin{document} | |
| \begin{par} | |
| \end{par} | |
| % | |
| \begin{figure}[bh] | |
| \begin{par} | |
| \hspace*{\fill}\\ | |
| \hlstd{}\ttfamily\noindent | |
| \hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlfunctioncall{require}\hlkeyword{(}\hlsymbol{ggplot2}\hlkeyword{)}\mbox{} | |
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| \hspace*{\fill}\\ | |
| \hlstd{}\ttfamily\noindent | |
| \hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlsymbol{df}{\ }\hlassignement{=}{\ }\hlfunctioncall{data.frame}\hlkeyword{(}\hlargument{x}{\ }\hlargument{=}{\ }\hlfunctioncall{c}\hlkeyword{(}\hlnumber{0}\hlkeyword{,}{\ }\hlnumber{1}\hlkeyword{)}\hlkeyword{,}{\ }\hlargument{y}{\ }\hlargument{=}{\ }\hlfunctioncall{c}\hlkeyword{(}\hlnumber{1}\hlkeyword{,}{\ }\hlnumber{10}\hlkeyword{)}\hlkeyword{)}\mbox{} | |
| \normalfont | |
| \hspace*{\fill}\\ | |
| \hlstd{}\ttfamily\noindent | |
| \hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlsymbol{Graph}{\ }\hlassignement{=}{\ }\hlfunctioncall{qplot}\hlkeyword{(}\hlsymbol{x}\hlkeyword{,}{\ }\hlsymbol{y}\hlkeyword{,}{\ }\hlargument{data}{\ }\hlargument{=}{\ }\hlsymbol{df}\hlkeyword{)}{\ }\hlkeyword{+}{\ }\hlfunctioncall{scale\usebox{\hlnormalsizeboxunderscore}y\usebox{\hlnormalsizeboxunderscore}log10}\hlkeyword{(}\hlkeyword{)}\mbox{} | |
| \normalfont | |
| \hspace*{\fill}\\ | |
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| \end{par} | |
| \end{figure} | |
| % | |
| \begin{sidewaysfigure} | |
| \begin{center} | |
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| \draw[color=drawColor,line width= 0.0pt,line cap=round,line join=round,fill opacity=0.00,] (613.59, 34.03) -- | |
| (613.59,493.84); | |
| \draw[color=drawColor,line width= 0.0pt,line cap=round,line join=round,fill opacity=0.00,] (674.29, 34.03) -- | |
| (674.29,493.84); | |
| \definecolor[named]{drawColor}{rgb}{1.00,1.00,1.00} | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] ( 37.02,101.38) -- | |
| (704.63,101.38); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] ( 37.02,194.27) -- | |
| (704.63,194.27); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] ( 37.02,287.16) -- | |
| (704.63,287.16); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] ( 37.02,380.05) -- | |
| (704.63,380.05); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] ( 37.02,472.94) -- | |
| (704.63,472.94); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] ( 67.37, 34.03) -- | |
| ( 67.37,493.84); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] (188.75, 34.03) -- | |
| (188.75,493.84); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] (310.13, 34.03) -- | |
| (310.13,493.84); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] (431.52, 34.03) -- | |
| (431.52,493.84); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] (552.90, 34.03) -- | |
| (552.90,493.84); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] (674.29, 34.03) -- | |
| (674.29,493.84); | |
| \definecolor[named]{fillColor}{rgb}{0.00,0.00,0.00} | |
| \draw[fill=fillColor,draw opacity=0.00,] ( 67.37, 54.94) circle ( 2.13); | |
| \draw[fill=fillColor,draw opacity=0.00,] (674.29,472.94) circle ( 2.13); | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 37.02, 34.03) rectangle (704.63, 34.03); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \definecolor[named]{drawColor}{rgb}{0.50,0.50,0.50} | |
| \node[color=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.96] at ( 67.37, 20.31) {0.0% | |
| }; | |
| \node[color=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.96] at (188.75, 20.31) {0.2% | |
| }; | |
| \node[color=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.96] at (310.13, 20.31) {0.4% | |
| }; | |
| \node[color=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.96] at (431.52, 20.31) {0.6% | |
| }; | |
| \node[color=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.96] at (552.90, 20.31) {0.8% | |
| }; | |
| \node[color=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.96] at (674.29, 20.31) {1.0% | |
| }; | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \definecolor[named]{drawColor}{rgb}{0.50,0.50,0.50} | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] ( 67.37, 29.77) -- ( 67.37, 34.03); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] (188.75, 29.77) -- (188.75, 34.03); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] (310.13, 29.77) -- (310.13, 34.03); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] (431.52, 29.77) -- (431.52, 34.03); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] (552.90, 29.77) -- (552.90, 34.03); | |
| \draw[color=drawColor,line cap=round,line join=round,fill opacity=0.00,] (674.29, 29.77) -- (674.29, 34.03); | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 37.02, 20.31) rectangle (704.63, 20.31); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63,493.84) rectangle (704.63,493.84); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63,493.84) rectangle (704.63,493.84); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 34.03) rectangle (704.63,493.84); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 34.03) rectangle (704.63, 34.03); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 20.31) rectangle (704.63, 34.03); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 20.31) rectangle (704.63, 20.31); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63,493.84) rectangle (704.63,493.84); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63,493.84) rectangle (704.63,493.84); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 34.03) rectangle (704.63,493.84); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 34.03) rectangle (704.63, 34.03); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 20.31) rectangle (704.63, 34.03); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 20.31) rectangle (704.63, 20.31); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63,493.84) rectangle (704.63,493.84); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63,493.84) rectangle (704.63,493.84); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 34.03) rectangle (704.63,493.84); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 34.03) rectangle (704.63, 34.03); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 20.31) rectangle (704.63, 34.03); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] (704.63, 20.31) rectangle (704.63, 20.31); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \begin{scope} | |
| \path[clip] ( 0.00, 0.00) rectangle (722.70,505.89); | |
| \definecolor[named]{drawColor}{rgb}{0.78,0.75,0.08} | |
| \end{scope} | |
| \end{tikzpicture} |
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| \batchmode | |
| \makeatletter | |
| \def\input@path{{/home/andreas/Documents/Lyx/LyX-pgfSweave-demo//}} | |
| \makeatother | |
| \documentclass[english]{article} | |
| \usepackage[T1]{fontenc} | |
| \usepackage[latin9]{inputenc} | |
| \usepackage[letterpaper]{geometry} | |
| \geometry{verbose,tmargin=2cm,bmargin=2cm,lmargin=3cm,rmargin=3cm} | |
| \usepackage{babel} | |
| \usepackage{rotfloat} | |
| \usepackage[unicode=true, pdfusetitle, | |
| bookmarks=true,bookmarksnumbered=true,bookmarksopen=true,bookmarksopenlevel=2, | |
| breaklinks=false,pdfborder={0 0 1},backref=false,colorlinks=false] | |
| {hyperref} | |
| \hypersetup{ | |
| pdfstartview=FitH} | |
| \makeatletter | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Textclass specific LaTeX commands. | |
| \usepackage{tikz} | |
| \usepackage[nogin,noae]{Sweave} | |
| \DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
| \DefineVerbatimEnvironment{Soutput}{Verbatim}{baselinestretch=1} | |
| \DefineVerbatimEnvironment{Scode}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% User specified LaTeX commands. | |
| %\usepackage{ae} | |
| %\renewcommand{\rmdefault}{ppl} | |
| %\renewcommand{\sfdefault}{aess} | |
| %\renewcommand{\ttdefault}{aett} | |
| \makeatother | |
| \begin{document} | |
| \SweaveOpts{externalize=TRUE,pdf=FALSE,eps=FALSE} | |
| \begin{par} | |
| <<setup, echo=FALSE>>= | |
| options(keep.blank.line=FALSE) | |
| @ | |
| \end{par} | |
| % | |
| \begin{figure}[bh] | |
| \begin{par} | |
| <<Code, tidy=T>>= | |
| require(ggplot2) | |
| df=data.frame(x = c(0,1) ,y = c(1,10) ) | |
| Graph=qplot(x,y,data=df)# +scale_y_log10() | |
| print(Graph) | |
| @ | |
| \end{par} | |
| \end{figure} | |
| % | |
| \begin{sidewaysfigure} | |
| \begin{center} | |
| <<echo=FALSE,fig=TRUE,width=10,height=7>>= | |
| <<Code>> | |
| @ | |
| \end{center} | |
| \caption{\label{fig:pgfSweave}Demonstration of \texttt{pgfSweave} graphics | |
| not working with semilogy} | |
| \end{sidewaysfigure} | |
| \end{document} |
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| \batchmode | |
| \makeatletter | |
| \def\input@path{{/home/andreas/Documents/Lyx/LyX-pgfSweave-demo//}} | |
| \makeatother | |
| \documentclass[english]{article} | |
| \usepackage[T1]{fontenc} | |
| \usepackage[latin9]{inputenc} | |
| \usepackage[letterpaper]{geometry} | |
| \geometry{verbose,tmargin=2cm,bmargin=2cm,lmargin=3cm,rmargin=3cm} | |
| \usepackage{babel} | |
| \usepackage{rotfloat} | |
| \usepackage[unicode=true, pdfusetitle, | |
| bookmarks=true,bookmarksnumbered=true,bookmarksopen=true,bookmarksopenlevel=2, | |
| breaklinks=false,pdfborder={0 0 1},backref=false,colorlinks=false] | |
| {hyperref} | |
| \hypersetup{ | |
| pdfstartview=FitH} | |
| \makeatletter | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Textclass specific LaTeX commands. | |
| \usepackage{tikz} | |
| \newcommand{\hlnumber}[1]{\textcolor[rgb]{0.0823529411764706,0.0784313725490196,0.709803921568627}{#1}}% | |
| \newcommand{\hlfunctioncall}[1]{\textcolor[rgb]{1,0,0}{#1}}% | |
| \newcommand{\hlstring}[1]{\textcolor[rgb]{0.6,0.6,1}{#1}}% | |
| \newcommand{\hlkeyword}[1]{\textcolor[rgb]{0,0,0}{\textbf{#1}}}% | |
| \newcommand{\hlargument}[1]{\textcolor[rgb]{0.694117647058824,0.247058823529412,0.0196078431372549}{#1}}% | |
| \newcommand{\hlcomment}[1]{\textcolor[rgb]{0.8,0.8,0.8}{#1}}% | |
| \newcommand{\hlroxygencomment}[1]{\textcolor[rgb]{0,0.592156862745098,1}{#1}}% | |
| \newcommand{\hlformalargs}[1]{\textcolor[rgb]{0.0705882352941176,0.713725490196078,0.0705882352941176}{#1}}% | |
| \newcommand{\hleqformalargs}[1]{\textcolor[rgb]{0.0705882352941176,0.713725490196078,0.0705882352941176}{#1}}% | |
| \newcommand{\hlassignement}[1]{\textcolor[rgb]{0.215686274509804,0.215686274509804,0.384313725490196}{\textbf{#1}}}% | |
| \newcommand{\hlpackage}[1]{\textcolor[rgb]{0.588235294117647,0.713725490196078,0.145098039215686}{#1}}% | |
| \newcommand{\hlslot}[1]{\textit{#1}}% | |
| \newcommand{\hlsymbol}[1]{\textcolor[rgb]{0,0,0}{#1}}% | |
| \newcommand{\hlprompt}[1]{\textcolor[rgb]{0,0,0}{#1}}% | |
| \usepackage{color}% | |
| \newsavebox{\hlnormalsizeboxclosebrace}% | |
| \newsavebox{\hlnormalsizeboxopenbrace}% | |
| \newsavebox{\hlnormalsizeboxbackslash}% | |
| \newsavebox{\hlnormalsizeboxlessthan}% | |
| \newsavebox{\hlnormalsizeboxgreaterthan}% | |
| \newsavebox{\hlnormalsizeboxdollar}% | |
| \newsavebox{\hlnormalsizeboxunderscore}% | |
| \newsavebox{\hlnormalsizeboxand}% | |
| \newsavebox{\hlnormalsizeboxhash}% | |
| \newsavebox{\hlnormalsizeboxat}% | |
| \newsavebox{\hlnormalsizeboxpercent}% | |
| \newsavebox{\hlnormalsizeboxhat}% | |
| \newsavebox{\hlnormalsizeboxsinglequote}% | |
| \newsavebox{\hlnormalsizeboxbacktick}% | |
| \setbox\hlnormalsizeboxopenbrace=\hbox{\begin{normalsize}\verb.{.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxclosebrace=\hbox{\begin{normalsize}\verb.}.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxlessthan=\hbox{\begin{normalsize}\verb.<.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxdollar=\hbox{\begin{normalsize}\verb.$.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxunderscore=\hbox{\begin{normalsize}\verb._.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxand=\hbox{\begin{normalsize}\verb.&.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxhash=\hbox{\begin{normalsize}\verb.#.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxat=\hbox{\begin{normalsize}\verb.@.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxbackslash=\hbox{\begin{normalsize}\verb.\.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxgreaterthan=\hbox{\begin{normalsize}\verb.>.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxpercent=\hbox{\begin{normalsize}\verb.%.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxhat=\hbox{\begin{normalsize}\verb.^.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxsinglequote=\hbox{\begin{normalsize}\verb.'.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxbacktick=\hbox{\begin{normalsize}\verb.`.\end{normalsize}}% | |
| \setbox\hlnormalsizeboxhat=\hbox{\begin{normalsize}\verb.^.\end{normalsize}}% | |
| \newsavebox{\hltinyboxclosebrace}% | |
| \newsavebox{\hltinyboxopenbrace}% | |
| \newsavebox{\hltinyboxbackslash}% | |
| \newsavebox{\hltinyboxlessthan}% | |
| \newsavebox{\hltinyboxgreaterthan}% | |
| \newsavebox{\hltinyboxdollar}% | |
| \newsavebox{\hltinyboxunderscore}% | |
| \newsavebox{\hltinyboxand}% | |
| \newsavebox{\hltinyboxhash}% | |
| \newsavebox{\hltinyboxat}% | |
| \newsavebox{\hltinyboxpercent}% | |
| \newsavebox{\hltinyboxhat}% | |
| \newsavebox{\hltinyboxsinglequote}% | |
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| \def\urltilda{\kern -.15em\lower .7ex\hbox{\~{}}\kern .04em}% | |
| \newcommand{\hlstd}[1]{\textcolor[rgb]{0,0,0}{#1}}% | |
| \newcommand{\hlnum}[1]{\textcolor[rgb]{0.16,0.16,1}{#1}} | |
| \newcommand{\hlesc}[1]{\textcolor[rgb]{1,0,1}{#1}} | |
| \newcommand{\hlstr}[1]{\textcolor[rgb]{1,0,0}{#1}} | |
| \newcommand{\hldstr}[1]{\textcolor[rgb]{0.51,0.51,0}{#1}} | |
| \newcommand{\hlslc}[1]{\textcolor[rgb]{0.51,0.51,0.51}{\it{#1}}} | |
| \newcommand{\hlcom}[1]{\textcolor[rgb]{0.51,0.51,0.51}{\it{#1}}} | |
| \newcommand{\hldir}[1]{\textcolor[rgb]{0,0.51,0}{#1}} | |
| \newcommand{\hlsym}[1]{\textcolor[rgb]{0,0,0}{#1}} | |
| \newcommand{\hlline}[1]{\textcolor[rgb]{0.33,0.33,0.33}{#1}} | |
| \newcommand{\hlkwa}[1]{\textcolor[rgb]{0,0,0}{\bf{#1}}} | |
| \newcommand{\hlkwb}[1]{\textcolor[rgb]{0.51,0,0}{#1}} | |
| \newcommand{\hlkwc}[1]{\textcolor[rgb]{0,0,0}{\bf{#1}}} | |
| \newcommand{\hlkwd}[1]{\textcolor[rgb]{0,0,0.51}{#1}} | |
| \usepackage[nogin,noae]{Sweave} | |
| \DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
| \DefineVerbatimEnvironment{Soutput}{Verbatim}{baselinestretch=1} | |
| \DefineVerbatimEnvironment{Scode}{Verbatim}{fontshape=sl,numbers=left,baselinestretch=1} | |
| %%%%%%%%%%%%%%%%%%%%%%%%%%%%%% User specified LaTeX commands. | |
| %\usepackage{ae} | |
| %\renewcommand{\rmdefault}{ppl} | |
| %\renewcommand{\sfdefault}{aess} | |
| %\renewcommand{\ttdefault}{aett} | |
| \makeatother | |
| \pgfrealjobname{demo-LyX-pgfSweave-runs-without-ggplot-scales_y_log10} | |
| \begin{document} | |
| \begin{par} | |
| \end{par} | |
| % | |
| \begin{figure}[bh] | |
| \begin{par} | |
| \hspace*{\fill}\\ | |
| \hlstd{}\ttfamily\noindent | |
| \hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlfunctioncall{require}\hlkeyword{(}\hlsymbol{ggplot2}\hlkeyword{)}\mbox{} | |
| \normalfont | |
| \hspace*{\fill}\\ | |
| \hlstd{}\ttfamily\noindent | |
| \hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlsymbol{df}{\ }\hlassignement{=}{\ }\hlfunctioncall{data.frame}\hlkeyword{(}\hlargument{x}{\ }\hlargument{=}{\ }\hlfunctioncall{c}\hlkeyword{(}\hlnumber{0}\hlkeyword{,}{\ }\hlnumber{1}\hlkeyword{)}\hlkeyword{,}{\ }\hlargument{y}{\ }\hlargument{=}{\ }\hlfunctioncall{c}\hlkeyword{(}\hlnumber{1}\hlkeyword{,}{\ }\hlnumber{10}\hlkeyword{)}\hlkeyword{)}\mbox{} | |
| \normalfont | |
| \hspace*{\fill}\\ | |
| \hlstd{}\ttfamily\noindent | |
| \hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlsymbol{Graph}{\ }\hlassignement{=}{\ }\hlfunctioncall{qplot}\hlkeyword{(}\hlsymbol{x}\hlkeyword{,}{\ }\hlsymbol{y}\hlkeyword{,}{\ }\hlargument{data}{\ }\hlargument{=}{\ }\hlsymbol{df}\hlkeyword{)}\mbox{} | |
| \normalfont | |
| \hspace*{\fill}\\ | |
| \hlstd{}\ttfamily\noindent | |
| \hlprompt{\usebox{\hlnormalsizeboxgreaterthan}{\ }}\hlfunctioncall{print}\hlkeyword{(}\hlsymbol{Graph}\hlkeyword{)}\mbox{} | |
| \normalfont | |
| \hspace*{\fill}\\ | |
| \hlstd{} | |
| \end{par} | |
| \end{figure} | |
| % | |
| \begin{sidewaysfigure} | |
| \begin{center} | |
| \input{demo-LyX-pgfSweave-runs-without-ggplot-scales_y_log10-003.tikz} | |
| \end{center} | |
| \caption{\label{fig:pgfSweave}Demonstration of \texttt{pgfSweave} graphics | |
| not working with semilogy} | |
| \end{sidewaysfigure} | |
| \end{document} |
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