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October 20, 2021 14:19
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(partial) EasyBuild log for failed build of /tmp/eb-cilb4hhf/files_pr12964/s/SciPy-bundle/SciPy-bundle-2021.05-intel-2021a.eb (PR(s) #12964)
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| ......... [ 67%] | |
| lib/tests/test_ufunclike.py ...... [ 67%] | |
| lib/tests/test_utils.py ............... [ 68%] | |
| linalg/tests/test_build.py . [ 68%] | |
| linalg/tests/test_deprecations.py . [ 68%] | |
| linalg/tests/test_linalg.py ............................................ [ 68%] | |
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| .........................................F.F............................ [ 70%] | |
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| linalg/tests/test_regression.py ......... [ 70%] | |
| ma/tests/test_core.py .................................................. [ 70%] | |
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| ma/tests/test_deprecations.py ...... [ 83%] | |
| ma/tests/test_extras.py ................................................ [ 84%] | |
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| ma/tests/test_mrecords.py ........................ [ 84%] | |
| ma/tests/test_old_ma.py ...................................... [ 84%] | |
| ma/tests/test_regression.py ............. [ 85%] | |
| ma/tests/test_subclassing.py ............ [ 85%] | |
| matrixlib/tests/test_defmatrix.py ...................................... [ 85%] | |
| ..... [ 85%] | |
| matrixlib/tests/test_interaction.py ....................... [ 85%] | |
| matrixlib/tests/test_masked_matrix.py .............. [ 85%] | |
| matrixlib/tests/test_matrix_linalg.py .................................. [ 85%] | |
| ........ [ 86%] | |
| matrixlib/tests/test_multiarray.py .. [ 86%] | |
| matrixlib/tests/test_numeric.py .. [ 86%] | |
| matrixlib/tests/test_regression.py .... [ 86%] | |
| polynomial/tests/test_chebyshev.py ..................................... [ 86%] | |
| .... [ 86%] | |
| polynomial/tests/test_classes.py ....................................... [ 86%] | |
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| polynomial/tests/test_hermite.py .................................. [ 88%] | |
| polynomial/tests/test_hermite_e.py .................................. [ 88%] | |
| polynomial/tests/test_laguerre.py .................................. [ 89%] | |
| polynomial/tests/test_legendre.py .................................. [ 89%] | |
| polynomial/tests/test_polynomial.py ............................... [ 89%] | |
| polynomial/tests/test_polyutils.py ...... [ 89%] | |
| polynomial/tests/test_printing.py ...................................... [ 89%] | |
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| random/tests/test_direct.py ............................................ [ 90%] | |
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| random/tests/test_extending.py s. [ 90%] | |
| random/tests/test_generator_mt19937.py ................................. [ 90%] | |
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| random/tests/test_generator_mt19937_regressions.py ............ [ 92%] | |
| random/tests/test_random.py ............................................ [ 92%] | |
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| random/tests/test_randomstate.py ....................................... [ 93%] | |
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| random/tests/test_randomstate_regression.py ................. [ 94%] | |
| random/tests/test_regression.py ........... [ 95%] | |
| random/tests/test_seed_sequence.py .. [ 95%] | |
| random/tests/test_smoke.py .s........................................... [ 95%] | |
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| testing/tests/test_decorators.py ........ [ 98%] | |
| testing/tests/test_utils.py ............................................ [ 98%] | |
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| tests/test_ctypeslib.py ....................... [ 99%] | |
| tests/test_matlib.py ........ [ 99%] | |
| tests/test_numpy_version.py . [ 99%] | |
| tests/test_public_api.py .......... [ 99%] | |
| tests/test_reloading.py ... [ 99%] | |
| tests/test_scripts.py xxx. [ 99%] | |
| typing/tests/test_isfile.py . [100%] | |
| ==================================== ERRORS ==================================== | |
| ________________ ERROR at setup of TestF90Callback.test_gh17797 ________________ | |
| self = <numpy.f2py.tests.test_callback.TestF90Callback object at 0x14f1950f5ca0> | |
| def setup(self): | |
| if sys.platform == 'win32': | |
| pytest.skip('Fails with MinGW64 Gfortran (Issue #9673)') | |
| if self.module is not None: | |
| return | |
| # Check compiler availability first | |
| if not has_c_compiler(): | |
| pytest.skip("No C compiler available") | |
| codes = [] | |
| if self.sources: | |
| codes.extend(self.sources) | |
| if self.code is not None: | |
| codes.append(self.suffix) | |
| needs_f77 = False | |
| needs_f90 = False | |
| for fn in codes: | |
| if fn.endswith('.f'): | |
| needs_f77 = True | |
| elif fn.endswith('.f90'): | |
| needs_f90 = True | |
| if needs_f77 and not has_f77_compiler(): | |
| pytest.skip("No Fortran 77 compiler available") | |
| if needs_f90 and not has_f90_compiler(): | |
| pytest.skip("No Fortran 90 compiler available") | |
| # Build the module | |
| if self.code is not None: | |
| > self.module = build_code(self.code, options=self.options, | |
| skip=self.skip, only=self.only, | |
| suffix=self.suffix, | |
| module_name=self.module_name) | |
| codes = ['.f90'] | |
| fn = '.f90' | |
| needs_f77 = False | |
| needs_f90 = True | |
| self = <numpy.f2py.tests.test_callback.TestF90Callback object at 0x14f1950f5ca0> | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/tests/util.py:351: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/tests/util.py:73: in wrapper | |
| memo[key] = func(*a, **kw) | |
| a = ('\nfunction gh17797(f, y) result(r)\n external f\n integer(8) :: r, f\n integer(8), dimension(:) :: y\n r = f(0)\n r = r + sum(y)\nend function gh17797\n',) | |
| func = <function build_code at 0x14f19b760310> | |
| key = "(('\\nfunction gh17797(f, y) result(r)\\n external f\\n integer(8) :: r, f\\n integer(8), dimension(:) :: y\\n r ...+ sum(y)\\nend function gh17797\\n',), {'options': [], 'skip': [], 'only': [], 'suffix': '.f90', 'module_name': None})" | |
| kw = {'module_name': None, 'only': [], 'options': [], 'skip': [], ...} | |
| memo = {'(("\\n subroutine t(fun,a)\\n integer a\\ncf2py intent(out) a\\n external fun\\n call fun(a.../tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1\n')} | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/tests/util.py:158: in build_code | |
| return build_module([path], options=options, skip=skip, only=only, | |
| f = <_io.TextIOWrapper name='/tmp/eb-cilb4hhf/tmpts2makj7.f90' mode='w' encoding='UTF-8'> | |
| module_name = None | |
| only = [] | |
| options = [] | |
| path = '/tmp/eb-cilb4hhf/tmpts2makj7.f90' | |
| skip = [] | |
| source_code = '\nfunction gh17797(f, y) result(r)\n external f\n integer(8) :: r, f\n integer(8), dimension(:) :: y\n r = f(0)\n r = r + sum(y)\nend function gh17797\n' | |
| suffix = '.f90' | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/tests/util.py:73: in wrapper | |
| memo[key] = func(*a, **kw) | |
| a = (['/tmp/eb-cilb4hhf/tmpts2makj7.f90'],) | |
| func = <function build_module at 0x14f19b7601f0> | |
| key = "((['/tmp/eb-cilb4hhf/tmpts2makj7.f90'],), {'options': [], 'skip': [], 'only': [], 'module_name': None})" | |
| kw = {'module_name': None, 'only': [], 'options': [], 'skip': []} | |
| memo = {"((['/tmp/eb-cilb4hhf/tmpc4yhd9p8.f'],), {'options': [], 'skip': [], 'only': [], 'module_name': None})": <module '_te.../tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1\n')} | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| source_files = ['/tmp/eb-cilb4hhf/tmpts2makj7.f90'], options = [], skip = [] | |
| only = [], module_name = '_test_ext_module_5407' | |
| @_memoize | |
| def build_module(source_files, options=[], skip=[], only=[], module_name=None): | |
| """ | |
| Compile and import a f2py module, built from the given files. | |
| """ | |
| code = ("import sys; sys.path = %s; import numpy.f2py as f2py2e; " | |
| "f2py2e.main()" % repr(sys.path)) | |
| d = get_module_dir() | |
| # Copy files | |
| dst_sources = [] | |
| f2py_sources = [] | |
| for fn in source_files: | |
| if not os.path.isfile(fn): | |
| raise RuntimeError("%s is not a file" % fn) | |
| dst = os.path.join(d, os.path.basename(fn)) | |
| shutil.copyfile(fn, dst) | |
| dst_sources.append(dst) | |
| base, ext = os.path.splitext(dst) | |
| if ext in ('.f90', '.f', '.c', '.pyf'): | |
| f2py_sources.append(dst) | |
| # Prepare options | |
| if module_name is None: | |
| module_name = get_temp_module_name() | |
| f2py_opts = ['-c', '-m', module_name] + options + f2py_sources | |
| if skip: | |
| f2py_opts += ['skip:'] + skip | |
| if only: | |
| f2py_opts += ['only:'] + only | |
| # Build | |
| cwd = os.getcwd() | |
| try: | |
| os.chdir(d) | |
| cmd = [sys.executable, '-c', code] + f2py_opts | |
| p = subprocess.Popen(cmd, stdout=subprocess.PIPE, | |
| stderr=subprocess.STDOUT) | |
| out, err = p.communicate() | |
| if p.returncode != 0: | |
| > raise RuntimeError("Running f2py failed: %s\n%s" | |
| % (cmd[4:], asstr(out))) | |
| E RuntimeError: Running f2py failed: ['-m', '_test_ext_module_5407', '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90'] | |
| E running build | |
| E running config_cc | |
| E unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
| E running config_fc | |
| E unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
| E running build_src | |
| E build_src | |
| E building extension "_test_ext_module_5407" sources | |
| E f2py options: [] | |
| E f2py:> /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407module.c | |
| E creating /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 | |
| E append_needs: unknown need 'int' | |
| E Reading fortran codes... | |
| E Reading file '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90' (format:free) | |
| E Post-processing... | |
| E Block: _test_ext_module_5407 | |
| E Block: gh17797 | |
| E Block: f | |
| E Post-processing (stage 2)... | |
| E Building modules... | |
| E Constructing call-back function "cb_f_in_gh17797__user__routines" | |
| E def f(e_0_err): return r | |
| E Building module "_test_ext_module_5407"... | |
| E Creating wrapper for Fortran function "gh17797"("gh17797")... | |
| E Constructing wrapper function "gh17797"... | |
| E r = gh17797(f,y,[f_extra_args]) | |
| E Wrote C/API module "_test_ext_module_5407" to file "/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407module.c" | |
| E Fortran 90 wrappers are saved to "/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90" | |
| E adding '/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.c' to sources. | |
| E adding '/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9' to include_dirs. | |
| E copying /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 | |
| E copying /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 | |
| E adding '/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90' to sources. | |
| E build_src: building npy-pkg config files | |
| E running build_ext | |
| E customize UnixCCompiler | |
| E C compiler: icc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -I/project/boegelbot/Rocky8/haswell/software/imkl/2021.2.0-iimpi-2021a/mkl/2021.2.0/include -fPIC | |
| E | |
| E creating /tmp/eb-cilb4hhf/tmpeql6xnh8/tmp | |
| E creating /tmp/eb-cilb4hhf/tmpeql6xnh8/tmp/eb-cilb4hhf | |
| E creating /tmp/eb-cilb4hhf/tmpeql6xnh8/tmp/eb-cilb4hhf/tmpeql6xnh8 | |
| E compile options: '-MMD -MF /tmp/eb-cilb4hhf/tmpeql6xnh8/file.c.d -c' | |
| E icc: /tmp/eb-cilb4hhf/tmpeql6xnh8/file.c | |
| E icc: command line warning #10148: option '-Wno-unused-result' not supported | |
| E icc: command line warning #10121: overriding '-march=native' with '-march=native' | |
| E icc: command line warning #10121: overriding '-march=native' with '-xHost' | |
| E Command-line warning #1678: cannot enable speculation unless fenv_access and exception_semantics are disabled | |
| E | |
| E customize UnixCCompiler using build_ext | |
| E get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' | |
| E customize Gnu95FCompiler | |
| E Found executable /project/boegelbot/Rocky8/haswell/software/intel-compilers/2021.2.0/compiler/2021.2.0/linux/bin/intel64/ifort | |
| E Could not locate executable icc -shared | |
| E Found executable /project/boegelbot/Rocky8/haswell/software/GCCcore/10.3.0/bin/gfortran | |
| E customize IntelFCompiler | |
| E customize LaheyFCompiler | |
| E customize PGroupFCompiler | |
| E customize NVHPCFCompiler | |
| E customize AbsoftFCompiler | |
| E customize NAGFCompiler | |
| E customize VastFCompiler | |
| E customize CompaqFCompiler | |
| E customize IntelItaniumFCompiler | |
| E customize IntelEM64TFCompiler | |
| E customize IntelEM64TFCompiler | |
| E customize IntelEM64TFCompiler using build_ext | |
| E building '_test_ext_module_5407' extension | |
| E compiling C sources | |
| E C compiler: icc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -I/project/boegelbot/Rocky8/haswell/software/imkl/2021.2.0-iimpi-2021a/mkl/2021.2.0/include -fPIC | |
| E | |
| E creating /tmp/eb-cilb4hhf/tmp681_dbqz/tmp | |
| E creating /tmp/eb-cilb4hhf/tmp681_dbqz/tmp/eb-cilb4hhf | |
| E creating /tmp/eb-cilb4hhf/tmp681_dbqz/tmp/eb-cilb4hhf/tmp681_dbqz | |
| E creating /tmp/eb-cilb4hhf/tmp681_dbqz/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 | |
| E compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 -I/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include -I/project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/include/python3.9 -c' | |
| E icc: /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407module.c | |
| E icc: /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.c | |
| E icc: command line warning #10148: option '-Wno-unused-result' not supported | |
| E icc: command line warning #10121: overriding '-march=native' with '-march=native' | |
| E icc: command line warning #10121: overriding '-march=native' with '-xHost' | |
| E icc: command line warning #10148: option '-Wno-unused-result' not supported | |
| E icc: command line warning #10121: overriding '-march=native' with '-march=native' | |
| E icc: command line warning #10121: overriding '-march=native' with '-xHost' | |
| E Command-line warning #1678: cannot enable speculation unless fenv_access and exception_semantics are disabled | |
| E | |
| E Command-line warning #1678: cannot enable speculation unless fenv_access and exception_semantics are disabled | |
| E | |
| E In file included from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
| E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
| E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.h(13), | |
| E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.c(2): | |
| E /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(84): warning #2650: attributes ignored here | |
| E NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), | |
| E ^ | |
| E | |
| E In file included from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
| E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
| E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.h(13), | |
| E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407module.c(16): | |
| E /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(84): warning #2650: attributes ignored here | |
| E NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), | |
| E ^ | |
| E | |
| E In file included from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(1944), | |
| E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
| E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
| E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.h(13), | |
| E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.c(2): | |
| E /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17): warning #1224: #warning directive: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" | |
| E #warning "Using deprecated NumPy API, disable it with " \ | |
| E ^ | |
| E | |
| E In file included from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(1944), | |
| E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
| E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
| E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.h(13), | |
| E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407module.c(16): | |
| E /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17): warning #1224: #warning directive: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" | |
| E #warning "Using deprecated NumPy API, disable it with " \ | |
| E ^ | |
| E | |
| E compiling Fortran sources | |
| E Fortran f77 compiler: ifort -FI -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp | |
| E Fortran f90 compiler: ifort -FR -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp | |
| E Fortran fix compiler: ifort -FI -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp | |
| E creating /tmp/eb-cilb4hhf/tmp681_dbqz/tmp/eb-cilb4hhf/tmpqk_ozfua | |
| E compile options: '-I/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 -I/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include -I/project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/include/python3.9 -c' | |
| E ifort:f90: /tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90 | |
| E ifort: command line warning #10121: overriding '-xHost' with '-xHost' | |
| E ifort:f90: /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90 | |
| E ifort: command line warning #10121: overriding '-xHost' with '-xHost' | |
| E /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90(12): error #6428: This name has already been used as a dummy procedure name. [F] | |
| E external f | |
| E -------------------^ | |
| E /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90(23): error #6633: The type of the actual argument differs from the type of the dummy argument. [F] | |
| E gh17797f2pywrap = gh17797(f, y) | |
| E --------------------------------^ | |
| E compilation aborted for /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90 (code 1) | |
| E error: Command "ifort -FR -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp -I/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 -I/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include -I/project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/include/python3.9 -c -c /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90 -o /tmp/eb-cilb4hhf/tmp681_dbqz/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1 | |
| base = '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7' | |
| cmd = ['/project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/bin/python', '-c', "import sys; sys.path = ['...r/lib/python3.9/site-packages']; import numpy.f2py as f2py2e; f2py2e.main()", '-c', '-m', '_test_ext_module_5407', ...] | |
| code = "import sys; sys.path = ['/tmp/eb-cilb4hhf/tmpqk_ozfua', '/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages', '...t/pytest-0/test_abstract_scalars0/installdir/lib/python3.9/site-packages']; import numpy.f2py as f2py2e; f2py2e.main()" | |
| cwd = '/tmp/boegelbot/SciPybundle/2021.05/intel-2021a/numpy' | |
| d = '/tmp/eb-cilb4hhf/tmpqk_ozfua' | |
| dst = '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90' | |
| dst_sources = ['/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90'] | |
| err = None | |
| ext = '.f90' | |
| f2py_opts = ['-c', '-m', '_test_ext_module_5407', '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90'] | |
| f2py_sources = ['/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90'] | |
| fn = '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90' | |
| module_name = '_test_ext_module_5407' | |
| only = [] | |
| options = [] | |
| out = b'running build\nrunning config_cc\nunifing config_cc, config, build_clib, build_ext, build commands --compiler option...qz/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1\n' | |
| p = <Popen: returncode: 1 args: ['/project/boegelbot/Rocky8/haswell/software/Pyt...> | |
| skip = [] | |
| source_files = ['/tmp/eb-cilb4hhf/tmpts2makj7.f90'] | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/tests/util.py:133: RuntimeError | |
| =================================== FAILURES =================================== | |
| ____________________ TestMatrixPower.test_large_power[dt15] ____________________ | |
| self = <numpy.linalg.tests.test_linalg.TestMatrixPower object at 0x14f1661c32b0> | |
| dt = dtype('complex256') | |
| def test_large_power(self, dt): | |
| rshft = self.rshft_1.astype(dt) | |
| > assert_equal( | |
| matrix_power(rshft, 2**100 + 2**10 + 2**5 + 0), self.rshft_0) | |
| E AssertionError: | |
| E Arrays are not equal | |
| E | |
| E x and y nan location mismatch: | |
| E x: array([[nan+nanj, nan+nanj, nan+nanj, nan+nanj], | |
| E [nan+nanj, nan+nanj, nan+nanj, nan+nanj], | |
| E [nan+nanj, nan+nanj, nan+nanj, nan+nanj], | |
| E [nan+nanj, nan+nanj, nan+nanj, nan+nanj]], dtype=complex256) | |
| E y: array([[1., 0., 0., 0.], | |
| E [0., 1., 0., 0.], | |
| E [0., 0., 1., 0.], | |
| E [0., 0., 0., 1.]]) | |
| dt = dtype('complex256') | |
| rshft = array([[0.+0.j, 0.+0.j, 0.+0.j, 1.+0.j], | |
| [1.+0.j, 0.+0.j, 0.+0.j, 0.+0.j], | |
| [0.+0.j, 1.+0.j, 0.+0.j, 0.+0.j], | |
| [0.+0.j, 0.+0.j, 1.+0.j, 0.+0.j]], dtype=complex256) | |
| self = <numpy.linalg.tests.test_linalg.TestMatrixPower object at 0x14f1661c32b0> | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/tests/test_linalg.py:999: AssertionError | |
| _________________ TestNorm_NonSystematic.test_longdouble_norm __________________ | |
| self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x14f165de6d90> | |
| def test_longdouble_norm(self): | |
| # Non-regression test: p-norm of longdouble would previously raise | |
| # UnboundLocalError. | |
| x = np.arange(10, dtype=np.longdouble) | |
| > old_assert_almost_equal(norm(x, ord=3), 12.65, decimal=2) | |
| E AssertionError: | |
| E Arrays are not almost equal to 2 decimals | |
| E ACTUAL: nan | |
| E DESIRED: 12.65 | |
| self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x14f165de6d90> | |
| x = array([0., 1., 2., 3., 4., 5., 6., 7., 8., 9.], dtype=float128) | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/tests/test_linalg.py:1513: AssertionError | |
| _________________ TestNorm_NonSystematic.test_complex_high_ord _________________ | |
| self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x14f166172b80> | |
| def test_complex_high_ord(self): | |
| # gh-4156 | |
| d = np.empty((2,), dtype=np.clongdouble) | |
| d[0] = 6 + 7j | |
| d[1] = -6 + 7j | |
| res = 11.615898132184 | |
| > old_assert_almost_equal(np.linalg.norm(d, ord=3), res, decimal=10) | |
| E AssertionError: | |
| E Arrays are not almost equal to 10 decimals | |
| E ACTUAL: nan | |
| E DESIRED: 11.615898132184 | |
| d = array([ 6.+7.j, -6.+7.j], dtype=complex256) | |
| res = 11.615898132184 | |
| self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x14f166172b80> | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/tests/test_linalg.py:1527: AssertionError | |
| =============================== warnings summary =============================== | |
| ../../../../../../project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/site-packages/nose/importer.py:12 | |
| /project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/site-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses | |
| from imp import find_module, load_module, acquire_lock, release_lock | |
| lib/tests/test_twodim_base.py::test_tril_triu_ndim2 | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/testing/_private/utils.py:770: RuntimeWarning: invalid value encountered in equal | |
| func=lambda xy: xy == +inf, | |
| linalg/tests/test_linalg.py::TestMatrixPower::test_large_power[dt15] | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/linalg.py:661: RuntimeWarning: invalid value encountered in matmul | |
| z = a if z is None else fmatmul(z, z) | |
| linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_longdouble_norm | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/linalg.py:2567: RuntimeWarning: invalid value encountered in power | |
| absx **= ord | |
| linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_longdouble_norm | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/linalg.py:2568: RuntimeWarning: invalid value encountered in reduce | |
| ret = add.reduce(absx, axis=axis, keepdims=keepdims) | |
| linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_complex_high_ord | |
| /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/linalg.py:2569: RuntimeWarning: invalid value encountered in longdouble_scalars | |
| ret **= (1 / ord) | |
| -- Docs: https://docs.pytest.org/en/stable/warnings.html | |
| =========================== short test summary info ============================ | |
| FAILED linalg/tests/test_linalg.py::TestMatrixPower::test_large_power[dt15] | |
| FAILED linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_longdouble_norm | |
| FAILED linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_complex_high_ord | |
| ERROR f2py/tests/test_callback.py::TestF90Callback::test_gh17797 - RuntimeErr... | |
| = 3 failed, 12573 passed, 445 skipped, 1208 deselected, 21 xfailed, 6 warnings, 1 error in 206.98s (0:03:26) = | |
| (at easybuild/easybuild-framework/easybuild/tools/run.py:577 in parse_cmd_output) | |
| == 2021-10-20 14:19:06,943 build_log.py:265 INFO ... (took 8 mins 25 secs) | |
| == 2021-10-20 14:19:06,943 build_log.py:265 INFO ... (took 8 mins 30 secs) | |
| == 2021-10-20 14:19:06,943 config.py:635 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/boegelbot/Rocky8/haswell/software | |
| == 2021-10-20 14:19:06,943 filetools.py:1963 INFO Removing lock /project/boegelbot/Rocky8/haswell/software/.locks/_project_boegelbot_Rocky8_haswell_software_SciPy-bundle_2021.05-intel-2021a.lock... | |
| == 2021-10-20 14:19:06,946 filetools.py:379 INFO Path /project/boegelbot/Rocky8/haswell/software/.locks/_project_boegelbot_Rocky8_haswell_software_SciPy-bundle_2021.05-intel-2021a.lock successfully removed. | |
| == 2021-10-20 14:19:06,946 filetools.py:1967 INFO Lock removed: /project/boegelbot/Rocky8/haswell/software/.locks/_project_boegelbot_Rocky8_haswell_software_SciPy-bundle_2021.05-intel-2021a.lock | |
| == 2021-10-20 14:19:06,946 easyblock.py:3753 WARNING build failed (first 300 chars): cmd "export PYTHONPATH=/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages:$PYTHONPATH && unset LDFLAGS && cd .. && /project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/bin/python -c 'import sys; import numpy; sys.exit(not numpy.test(verbose=2))' " exited with exit code 1 and | |
| == 2021-10-20 14:19:06,946 easyblock.py:307 INFO Closing log for application name SciPy-bundle version 2021.05 |
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