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October 20, 2021 14:19
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(partial) EasyBuild log for failed build of /tmp/eb-cilb4hhf/files_pr12964/s/SciPy-bundle/SciPy-bundle-2021.05-intel-2021a.eb (PR(s) #12964)
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lib/tests/test_ufunclike.py ...... [ 67%] | |
lib/tests/test_utils.py ............... [ 68%] | |
linalg/tests/test_build.py . [ 68%] | |
linalg/tests/test_deprecations.py . [ 68%] | |
linalg/tests/test_linalg.py ............................................ [ 68%] | |
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linalg/tests/test_regression.py ......... [ 70%] | |
ma/tests/test_core.py .................................................. [ 70%] | |
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ma/tests/test_deprecations.py ...... [ 83%] | |
ma/tests/test_extras.py ................................................ [ 84%] | |
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ma/tests/test_mrecords.py ........................ [ 84%] | |
ma/tests/test_old_ma.py ...................................... [ 84%] | |
ma/tests/test_regression.py ............. [ 85%] | |
ma/tests/test_subclassing.py ............ [ 85%] | |
matrixlib/tests/test_defmatrix.py ...................................... [ 85%] | |
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matrixlib/tests/test_interaction.py ....................... [ 85%] | |
matrixlib/tests/test_masked_matrix.py .............. [ 85%] | |
matrixlib/tests/test_matrix_linalg.py .................................. [ 85%] | |
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matrixlib/tests/test_multiarray.py .. [ 86%] | |
matrixlib/tests/test_numeric.py .. [ 86%] | |
matrixlib/tests/test_regression.py .... [ 86%] | |
polynomial/tests/test_chebyshev.py ..................................... [ 86%] | |
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polynomial/tests/test_classes.py ....................................... [ 86%] | |
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polynomial/tests/test_hermite.py .................................. [ 88%] | |
polynomial/tests/test_hermite_e.py .................................. [ 88%] | |
polynomial/tests/test_laguerre.py .................................. [ 89%] | |
polynomial/tests/test_legendre.py .................................. [ 89%] | |
polynomial/tests/test_polynomial.py ............................... [ 89%] | |
polynomial/tests/test_polyutils.py ...... [ 89%] | |
polynomial/tests/test_printing.py ...................................... [ 89%] | |
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random/tests/test_direct.py ............................................ [ 90%] | |
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random/tests/test_extending.py s. [ 90%] | |
random/tests/test_generator_mt19937.py ................................. [ 90%] | |
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random/tests/test_generator_mt19937_regressions.py ............ [ 92%] | |
random/tests/test_random.py ............................................ [ 92%] | |
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random/tests/test_randomstate.py ....................................... [ 93%] | |
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random/tests/test_randomstate_regression.py ................. [ 94%] | |
random/tests/test_regression.py ........... [ 95%] | |
random/tests/test_seed_sequence.py .. [ 95%] | |
random/tests/test_smoke.py .s........................................... [ 95%] | |
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testing/tests/test_decorators.py ........ [ 98%] | |
testing/tests/test_utils.py ............................................ [ 98%] | |
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tests/test_ctypeslib.py ....................... [ 99%] | |
tests/test_matlib.py ........ [ 99%] | |
tests/test_numpy_version.py . [ 99%] | |
tests/test_public_api.py .......... [ 99%] | |
tests/test_reloading.py ... [ 99%] | |
tests/test_scripts.py xxx. [ 99%] | |
typing/tests/test_isfile.py . [100%] | |
==================================== ERRORS ==================================== | |
________________ ERROR at setup of TestF90Callback.test_gh17797 ________________ | |
self = <numpy.f2py.tests.test_callback.TestF90Callback object at 0x14f1950f5ca0> | |
def setup(self): | |
if sys.platform == 'win32': | |
pytest.skip('Fails with MinGW64 Gfortran (Issue #9673)') | |
if self.module is not None: | |
return | |
# Check compiler availability first | |
if not has_c_compiler(): | |
pytest.skip("No C compiler available") | |
codes = [] | |
if self.sources: | |
codes.extend(self.sources) | |
if self.code is not None: | |
codes.append(self.suffix) | |
needs_f77 = False | |
needs_f90 = False | |
for fn in codes: | |
if fn.endswith('.f'): | |
needs_f77 = True | |
elif fn.endswith('.f90'): | |
needs_f90 = True | |
if needs_f77 and not has_f77_compiler(): | |
pytest.skip("No Fortran 77 compiler available") | |
if needs_f90 and not has_f90_compiler(): | |
pytest.skip("No Fortran 90 compiler available") | |
# Build the module | |
if self.code is not None: | |
> self.module = build_code(self.code, options=self.options, | |
skip=self.skip, only=self.only, | |
suffix=self.suffix, | |
module_name=self.module_name) | |
codes = ['.f90'] | |
fn = '.f90' | |
needs_f77 = False | |
needs_f90 = True | |
self = <numpy.f2py.tests.test_callback.TestF90Callback object at 0x14f1950f5ca0> | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/tests/util.py:351: | |
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/tests/util.py:73: in wrapper | |
memo[key] = func(*a, **kw) | |
a = ('\nfunction gh17797(f, y) result(r)\n external f\n integer(8) :: r, f\n integer(8), dimension(:) :: y\n r = f(0)\n r = r + sum(y)\nend function gh17797\n',) | |
func = <function build_code at 0x14f19b760310> | |
key = "(('\\nfunction gh17797(f, y) result(r)\\n external f\\n integer(8) :: r, f\\n integer(8), dimension(:) :: y\\n r ...+ sum(y)\\nend function gh17797\\n',), {'options': [], 'skip': [], 'only': [], 'suffix': '.f90', 'module_name': None})" | |
kw = {'module_name': None, 'only': [], 'options': [], 'skip': [], ...} | |
memo = {'(("\\n subroutine t(fun,a)\\n integer a\\ncf2py intent(out) a\\n external fun\\n call fun(a.../tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1\n')} | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/tests/util.py:158: in build_code | |
return build_module([path], options=options, skip=skip, only=only, | |
f = <_io.TextIOWrapper name='/tmp/eb-cilb4hhf/tmpts2makj7.f90' mode='w' encoding='UTF-8'> | |
module_name = None | |
only = [] | |
options = [] | |
path = '/tmp/eb-cilb4hhf/tmpts2makj7.f90' | |
skip = [] | |
source_code = '\nfunction gh17797(f, y) result(r)\n external f\n integer(8) :: r, f\n integer(8), dimension(:) :: y\n r = f(0)\n r = r + sum(y)\nend function gh17797\n' | |
suffix = '.f90' | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/tests/util.py:73: in wrapper | |
memo[key] = func(*a, **kw) | |
a = (['/tmp/eb-cilb4hhf/tmpts2makj7.f90'],) | |
func = <function build_module at 0x14f19b7601f0> | |
key = "((['/tmp/eb-cilb4hhf/tmpts2makj7.f90'],), {'options': [], 'skip': [], 'only': [], 'module_name': None})" | |
kw = {'module_name': None, 'only': [], 'options': [], 'skip': []} | |
memo = {"((['/tmp/eb-cilb4hhf/tmpc4yhd9p8.f'],), {'options': [], 'skip': [], 'only': [], 'module_name': None})": <module '_te.../tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1\n')} | |
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
source_files = ['/tmp/eb-cilb4hhf/tmpts2makj7.f90'], options = [], skip = [] | |
only = [], module_name = '_test_ext_module_5407' | |
@_memoize | |
def build_module(source_files, options=[], skip=[], only=[], module_name=None): | |
""" | |
Compile and import a f2py module, built from the given files. | |
""" | |
code = ("import sys; sys.path = %s; import numpy.f2py as f2py2e; " | |
"f2py2e.main()" % repr(sys.path)) | |
d = get_module_dir() | |
# Copy files | |
dst_sources = [] | |
f2py_sources = [] | |
for fn in source_files: | |
if not os.path.isfile(fn): | |
raise RuntimeError("%s is not a file" % fn) | |
dst = os.path.join(d, os.path.basename(fn)) | |
shutil.copyfile(fn, dst) | |
dst_sources.append(dst) | |
base, ext = os.path.splitext(dst) | |
if ext in ('.f90', '.f', '.c', '.pyf'): | |
f2py_sources.append(dst) | |
# Prepare options | |
if module_name is None: | |
module_name = get_temp_module_name() | |
f2py_opts = ['-c', '-m', module_name] + options + f2py_sources | |
if skip: | |
f2py_opts += ['skip:'] + skip | |
if only: | |
f2py_opts += ['only:'] + only | |
# Build | |
cwd = os.getcwd() | |
try: | |
os.chdir(d) | |
cmd = [sys.executable, '-c', code] + f2py_opts | |
p = subprocess.Popen(cmd, stdout=subprocess.PIPE, | |
stderr=subprocess.STDOUT) | |
out, err = p.communicate() | |
if p.returncode != 0: | |
> raise RuntimeError("Running f2py failed: %s\n%s" | |
% (cmd[4:], asstr(out))) | |
E RuntimeError: Running f2py failed: ['-m', '_test_ext_module_5407', '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90'] | |
E running build | |
E running config_cc | |
E unifing config_cc, config, build_clib, build_ext, build commands --compiler options | |
E running config_fc | |
E unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options | |
E running build_src | |
E build_src | |
E building extension "_test_ext_module_5407" sources | |
E f2py options: [] | |
E f2py:> /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407module.c | |
E creating /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 | |
E append_needs: unknown need 'int' | |
E Reading fortran codes... | |
E Reading file '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90' (format:free) | |
E Post-processing... | |
E Block: _test_ext_module_5407 | |
E Block: gh17797 | |
E Block: f | |
E Post-processing (stage 2)... | |
E Building modules... | |
E Constructing call-back function "cb_f_in_gh17797__user__routines" | |
E def f(e_0_err): return r | |
E Building module "_test_ext_module_5407"... | |
E Creating wrapper for Fortran function "gh17797"("gh17797")... | |
E Constructing wrapper function "gh17797"... | |
E r = gh17797(f,y,[f_extra_args]) | |
E Wrote C/API module "_test_ext_module_5407" to file "/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407module.c" | |
E Fortran 90 wrappers are saved to "/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90" | |
E adding '/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.c' to sources. | |
E adding '/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9' to include_dirs. | |
E copying /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 | |
E copying /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 | |
E adding '/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90' to sources. | |
E build_src: building npy-pkg config files | |
E running build_ext | |
E customize UnixCCompiler | |
E C compiler: icc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -I/project/boegelbot/Rocky8/haswell/software/imkl/2021.2.0-iimpi-2021a/mkl/2021.2.0/include -fPIC | |
E | |
E creating /tmp/eb-cilb4hhf/tmpeql6xnh8/tmp | |
E creating /tmp/eb-cilb4hhf/tmpeql6xnh8/tmp/eb-cilb4hhf | |
E creating /tmp/eb-cilb4hhf/tmpeql6xnh8/tmp/eb-cilb4hhf/tmpeql6xnh8 | |
E compile options: '-MMD -MF /tmp/eb-cilb4hhf/tmpeql6xnh8/file.c.d -c' | |
E icc: /tmp/eb-cilb4hhf/tmpeql6xnh8/file.c | |
E icc: command line warning #10148: option '-Wno-unused-result' not supported | |
E icc: command line warning #10121: overriding '-march=native' with '-march=native' | |
E icc: command line warning #10121: overriding '-march=native' with '-xHost' | |
E Command-line warning #1678: cannot enable speculation unless fenv_access and exception_semantics are disabled | |
E | |
E customize UnixCCompiler using build_ext | |
E get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' | |
E customize Gnu95FCompiler | |
E Found executable /project/boegelbot/Rocky8/haswell/software/intel-compilers/2021.2.0/compiler/2021.2.0/linux/bin/intel64/ifort | |
E Could not locate executable icc -shared | |
E Found executable /project/boegelbot/Rocky8/haswell/software/GCCcore/10.3.0/bin/gfortran | |
E customize IntelFCompiler | |
E customize LaheyFCompiler | |
E customize PGroupFCompiler | |
E customize NVHPCFCompiler | |
E customize AbsoftFCompiler | |
E customize NAGFCompiler | |
E customize VastFCompiler | |
E customize CompaqFCompiler | |
E customize IntelItaniumFCompiler | |
E customize IntelEM64TFCompiler | |
E customize IntelEM64TFCompiler | |
E customize IntelEM64TFCompiler using build_ext | |
E building '_test_ext_module_5407' extension | |
E compiling C sources | |
E C compiler: icc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -I/project/boegelbot/Rocky8/haswell/software/imkl/2021.2.0-iimpi-2021a/mkl/2021.2.0/include -fPIC | |
E | |
E creating /tmp/eb-cilb4hhf/tmp681_dbqz/tmp | |
E creating /tmp/eb-cilb4hhf/tmp681_dbqz/tmp/eb-cilb4hhf | |
E creating /tmp/eb-cilb4hhf/tmp681_dbqz/tmp/eb-cilb4hhf/tmp681_dbqz | |
E creating /tmp/eb-cilb4hhf/tmp681_dbqz/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 | |
E compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 -I/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include -I/project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/include/python3.9 -c' | |
E icc: /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407module.c | |
E icc: /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.c | |
E icc: command line warning #10148: option '-Wno-unused-result' not supported | |
E icc: command line warning #10121: overriding '-march=native' with '-march=native' | |
E icc: command line warning #10121: overriding '-march=native' with '-xHost' | |
E icc: command line warning #10148: option '-Wno-unused-result' not supported | |
E icc: command line warning #10121: overriding '-march=native' with '-march=native' | |
E icc: command line warning #10121: overriding '-march=native' with '-xHost' | |
E Command-line warning #1678: cannot enable speculation unless fenv_access and exception_semantics are disabled | |
E | |
E Command-line warning #1678: cannot enable speculation unless fenv_access and exception_semantics are disabled | |
E | |
E In file included from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.h(13), | |
E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.c(2): | |
E /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(84): warning #2650: attributes ignored here | |
E NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), | |
E ^ | |
E | |
E In file included from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.h(13), | |
E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407module.c(16): | |
E /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(84): warning #2650: attributes ignored here | |
E NPY_CHAR NPY_ATTR_DEPRECATE("Use NPY_STRING"), | |
E ^ | |
E | |
E In file included from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(1944), | |
E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.h(13), | |
E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.c(2): | |
E /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17): warning #1224: #warning directive: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" | |
E #warning "Using deprecated NumPy API, disable it with " \ | |
E ^ | |
E | |
E In file included from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h(1944), | |
E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), | |
E from /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h(4), | |
E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/fortranobject.h(13), | |
E from /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407module.c(16): | |
E /tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17): warning #1224: #warning directive: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" | |
E #warning "Using deprecated NumPy API, disable it with " \ | |
E ^ | |
E | |
E compiling Fortran sources | |
E Fortran f77 compiler: ifort -FI -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp | |
E Fortran f90 compiler: ifort -FR -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp | |
E Fortran fix compiler: ifort -FI -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp | |
E creating /tmp/eb-cilb4hhf/tmp681_dbqz/tmp/eb-cilb4hhf/tmpqk_ozfua | |
E compile options: '-I/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 -I/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include -I/project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/include/python3.9 -c' | |
E ifort:f90: /tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90 | |
E ifort: command line warning #10121: overriding '-xHost' with '-xHost' | |
E ifort:f90: /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90 | |
E ifort: command line warning #10121: overriding '-xHost' with '-xHost' | |
E /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90(12): error #6428: This name has already been used as a dummy procedure name. [F] | |
E external f | |
E -------------------^ | |
E /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90(23): error #6633: The type of the actual argument differs from the type of the dummy argument. [F] | |
E gh17797f2pywrap = gh17797(f, y) | |
E --------------------------------^ | |
E compilation aborted for /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90 (code 1) | |
E error: Command "ifort -FR -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fPIC -O1 -xHost -fp-speculation=strict -fp-model strict -fPIC -fp-model strict -O1 -qopenmp -I/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9 -I/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/core/include -I/project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/include/python3.9 -c -c /tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.f90 -o /tmp/eb-cilb4hhf/tmp681_dbqz/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1 | |
base = '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7' | |
cmd = ['/project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/bin/python', '-c', "import sys; sys.path = ['...r/lib/python3.9/site-packages']; import numpy.f2py as f2py2e; f2py2e.main()", '-c', '-m', '_test_ext_module_5407', ...] | |
code = "import sys; sys.path = ['/tmp/eb-cilb4hhf/tmpqk_ozfua', '/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages', '...t/pytest-0/test_abstract_scalars0/installdir/lib/python3.9/site-packages']; import numpy.f2py as f2py2e; f2py2e.main()" | |
cwd = '/tmp/boegelbot/SciPybundle/2021.05/intel-2021a/numpy' | |
d = '/tmp/eb-cilb4hhf/tmpqk_ozfua' | |
dst = '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90' | |
dst_sources = ['/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90'] | |
err = None | |
ext = '.f90' | |
f2py_opts = ['-c', '-m', '_test_ext_module_5407', '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90'] | |
f2py_sources = ['/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90'] | |
fn = '/tmp/eb-cilb4hhf/tmpqk_ozfua/tmpts2makj7.f90' | |
module_name = '_test_ext_module_5407' | |
only = [] | |
options = [] | |
out = b'running build\nrunning config_cc\nunifing config_cc, config, build_clib, build_ext, build commands --compiler option...qz/tmp/eb-cilb4hhf/tmp681_dbqz/src.linux-x86_64-3.9/_test_ext_module_5407-f2pywrappers2.o" failed with exit status 1\n' | |
p = <Popen: returncode: 1 args: ['/project/boegelbot/Rocky8/haswell/software/Pyt...> | |
skip = [] | |
source_files = ['/tmp/eb-cilb4hhf/tmpts2makj7.f90'] | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/f2py/tests/util.py:133: RuntimeError | |
=================================== FAILURES =================================== | |
____________________ TestMatrixPower.test_large_power[dt15] ____________________ | |
self = <numpy.linalg.tests.test_linalg.TestMatrixPower object at 0x14f1661c32b0> | |
dt = dtype('complex256') | |
def test_large_power(self, dt): | |
rshft = self.rshft_1.astype(dt) | |
> assert_equal( | |
matrix_power(rshft, 2**100 + 2**10 + 2**5 + 0), self.rshft_0) | |
E AssertionError: | |
E Arrays are not equal | |
E | |
E x and y nan location mismatch: | |
E x: array([[nan+nanj, nan+nanj, nan+nanj, nan+nanj], | |
E [nan+nanj, nan+nanj, nan+nanj, nan+nanj], | |
E [nan+nanj, nan+nanj, nan+nanj, nan+nanj], | |
E [nan+nanj, nan+nanj, nan+nanj, nan+nanj]], dtype=complex256) | |
E y: array([[1., 0., 0., 0.], | |
E [0., 1., 0., 0.], | |
E [0., 0., 1., 0.], | |
E [0., 0., 0., 1.]]) | |
dt = dtype('complex256') | |
rshft = array([[0.+0.j, 0.+0.j, 0.+0.j, 1.+0.j], | |
[1.+0.j, 0.+0.j, 0.+0.j, 0.+0.j], | |
[0.+0.j, 1.+0.j, 0.+0.j, 0.+0.j], | |
[0.+0.j, 0.+0.j, 1.+0.j, 0.+0.j]], dtype=complex256) | |
self = <numpy.linalg.tests.test_linalg.TestMatrixPower object at 0x14f1661c32b0> | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/tests/test_linalg.py:999: AssertionError | |
_________________ TestNorm_NonSystematic.test_longdouble_norm __________________ | |
self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x14f165de6d90> | |
def test_longdouble_norm(self): | |
# Non-regression test: p-norm of longdouble would previously raise | |
# UnboundLocalError. | |
x = np.arange(10, dtype=np.longdouble) | |
> old_assert_almost_equal(norm(x, ord=3), 12.65, decimal=2) | |
E AssertionError: | |
E Arrays are not almost equal to 2 decimals | |
E ACTUAL: nan | |
E DESIRED: 12.65 | |
self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x14f165de6d90> | |
x = array([0., 1., 2., 3., 4., 5., 6., 7., 8., 9.], dtype=float128) | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/tests/test_linalg.py:1513: AssertionError | |
_________________ TestNorm_NonSystematic.test_complex_high_ord _________________ | |
self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x14f166172b80> | |
def test_complex_high_ord(self): | |
# gh-4156 | |
d = np.empty((2,), dtype=np.clongdouble) | |
d[0] = 6 + 7j | |
d[1] = -6 + 7j | |
res = 11.615898132184 | |
> old_assert_almost_equal(np.linalg.norm(d, ord=3), res, decimal=10) | |
E AssertionError: | |
E Arrays are not almost equal to 10 decimals | |
E ACTUAL: nan | |
E DESIRED: 11.615898132184 | |
d = array([ 6.+7.j, -6.+7.j], dtype=complex256) | |
res = 11.615898132184 | |
self = <numpy.linalg.tests.test_linalg.TestNorm_NonSystematic object at 0x14f166172b80> | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/tests/test_linalg.py:1527: AssertionError | |
=============================== warnings summary =============================== | |
../../../../../../project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/site-packages/nose/importer.py:12 | |
/project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/lib/python3.9/site-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses | |
from imp import find_module, load_module, acquire_lock, release_lock | |
lib/tests/test_twodim_base.py::test_tril_triu_ndim2 | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/testing/_private/utils.py:770: RuntimeWarning: invalid value encountered in equal | |
func=lambda xy: xy == +inf, | |
linalg/tests/test_linalg.py::TestMatrixPower::test_large_power[dt15] | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/linalg.py:661: RuntimeWarning: invalid value encountered in matmul | |
z = a if z is None else fmatmul(z, z) | |
linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_longdouble_norm | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/linalg.py:2567: RuntimeWarning: invalid value encountered in power | |
absx **= ord | |
linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_longdouble_norm | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/linalg.py:2568: RuntimeWarning: invalid value encountered in reduce | |
ret = add.reduce(absx, axis=axis, keepdims=keepdims) | |
linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_complex_high_ord | |
/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages/numpy/linalg/linalg.py:2569: RuntimeWarning: invalid value encountered in longdouble_scalars | |
ret **= (1 / ord) | |
-- Docs: https://docs.pytest.org/en/stable/warnings.html | |
=========================== short test summary info ============================ | |
FAILED linalg/tests/test_linalg.py::TestMatrixPower::test_large_power[dt15] | |
FAILED linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_longdouble_norm | |
FAILED linalg/tests/test_linalg.py::TestNorm_NonSystematic::test_complex_high_ord | |
ERROR f2py/tests/test_callback.py::TestF90Callback::test_gh17797 - RuntimeErr... | |
= 3 failed, 12573 passed, 445 skipped, 1208 deselected, 21 xfailed, 6 warnings, 1 error in 206.98s (0:03:26) = | |
(at easybuild/easybuild-framework/easybuild/tools/run.py:577 in parse_cmd_output) | |
== 2021-10-20 14:19:06,943 build_log.py:265 INFO ... (took 8 mins 25 secs) | |
== 2021-10-20 14:19:06,943 build_log.py:265 INFO ... (took 8 mins 30 secs) | |
== 2021-10-20 14:19:06,943 config.py:635 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/boegelbot/Rocky8/haswell/software | |
== 2021-10-20 14:19:06,943 filetools.py:1963 INFO Removing lock /project/boegelbot/Rocky8/haswell/software/.locks/_project_boegelbot_Rocky8_haswell_software_SciPy-bundle_2021.05-intel-2021a.lock... | |
== 2021-10-20 14:19:06,946 filetools.py:379 INFO Path /project/boegelbot/Rocky8/haswell/software/.locks/_project_boegelbot_Rocky8_haswell_software_SciPy-bundle_2021.05-intel-2021a.lock successfully removed. | |
== 2021-10-20 14:19:06,946 filetools.py:1967 INFO Lock removed: /project/boegelbot/Rocky8/haswell/software/.locks/_project_boegelbot_Rocky8_haswell_software_SciPy-bundle_2021.05-intel-2021a.lock | |
== 2021-10-20 14:19:06,946 easyblock.py:3753 WARNING build failed (first 300 chars): cmd "export PYTHONPATH=/tmp/eb-cilb4hhf/tmp_xo1u4mh/lib/python3.9/site-packages:$PYTHONPATH && unset LDFLAGS && cd .. && /project/boegelbot/Rocky8/haswell/software/Python/3.9.5-GCCcore-10.3.0/bin/python -c 'import sys; import numpy; sys.exit(not numpy.test(verbose=2))' " exited with exit code 1 and | |
== 2021-10-20 14:19:06,946 easyblock.py:307 INFO Closing log for application name SciPy-bundle version 2021.05 |
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