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May 30, 2021 16:49
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* Package: sci-libs/mlpack-3.4.2 | |
* Repository: science | |
* Maintainer: gentoo@aisha.cc sci@gentoo.org | |
* USE: R abi_x86_64 amd64 elibc_glibc go julia kernel_linux openmp python_single_target_python3_8 userland_GNU | |
* FEATURES: fakeroot network-sandbox preserve-libs sandbox splitdebug userpriv usersandbox | |
Auto packing the repository in background for optimum performance. | |
See "git help gc" for manual housekeeping. | |
[master 3416a3b5] saving uncommitted changes in /etc prior to emerge run | |
Author: Alessandro-Barbieri <lssndrbarbieri@gmail.com> | |
1 file changed, 1 insertion(+), 1 deletion(-) | |
* /etc/portage/package.cflags/cflags -> */*: NOFFLAGS=1 | |
* /etc/portage/package.cflags/cflags -> */*: LDFLAGS-="-Wl,-z,now -Wl,-z,relro" | |
* /etc/portage/package.cflags/cflags -> */*: USE_NONGNU="" +fPIE +fstack-protector-all +D_FORTIFY_SOURCE=2 | |
* /etc/portage/package.cflags/cflags -> */*: NOLDADD=1 | |
* FEATURES='assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg candy cgroup clean-logs config-protect-if-modified distlocks ebuild-locks fakeroot fixlafiles ipc-sandbox merge-sync metadata-transfer mount-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-elog split-log splitdebug strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr' | |
* CFLAGS='-Os -pipe -march=native -fdiagnostics-color=always -fexceptions -Wformat -fstack-clash-protection -Wimplicit-function-declaration -Wno-error=implicit-function-declaration' | |
* CXXFLAGS='-Os -pipe -march=native -fdiagnostics-color=always -fexceptions -Wformat -fstack-clash-protection' | |
* CPPFLAGS='-D_GLIBCXX_ASSERTIONS' | |
* FFLAGS='-Os -pipe -march=native -fdiagnostics-color=always' | |
* FCFLAGS='-Os -pipe -march=native -fdiagnostics-color=always' | |
* F77FLAGS='-Os -pipe -march=native -fdiagnostics-color=always' | |
* LDFLAGS='-Wl,-O1 -Wl,--as-needed -Wl,--sort-common' | |
* MAKEOPTS='-j12 -l15' | |
* gcc (Gentoo Hardened 10.2.0-r5 p6) 10.2.0 | |
* g++ (Gentoo Hardened 10.2.0-r5 p6) 10.2.0 | |
* LLD 12.0.0 (compatible with GNU linkers) | |
* Linux ALESSAND-F1E8 5.10.4-rt-rt22-x86_64 #3 SMP PREEMPT_RT Sun Apr 18 16:12:36 CEST 2021 x86_64 AMD Ryzen 5 3600 6-Core Processor AuthenticAMD GNU/Linux | |
0;emerge 18:31:04 3|3 mlpack (root@ALESSAND-F1E8) | |
kemerge 18:31:04 3|3 mlpack (root@ALESSAND-F1E8)\ * If you want to build matlab bindings then you | |
* need to make sure that matlab has been installed | |
* prior to building this package and it is available | |
* in the standard locations to be found by | |
* CMake, library finders, header includes and other | |
* trinkets that are used while compiling. | |
* Matlab will not be entertained as a first class | |
* citizen until we have enough personnel | |
* Using python3.8 to build | |
>>> Unpacking source... | |
>>> Unpacking mlpack-3.4.2.tar.gz to /var/tmp/portage/sci-libs/mlpack-3.4.2/work | |
>>> Source unpacked in /var/tmp/portage/sci-libs/mlpack-3.4.2/work | |
>>> Preparing source in /var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2 ... | |
* Working in BUILD_DIR: "/var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2_build" | |
>>> Source prepared. | |
>>> Configuring source in /var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2 ... | |
* Working in BUILD_DIR: "/var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2_build" | |
cmake -C /var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DDISABLE_DOWNLOADS=ON -DDOWNLOAD_ENSMALLEN=OFF -DDOWNLOAD_STB_IMAGE=OFF -DBUILD_WITH_COVERAGE=OFF -DBUILD_PYTHON_BINDINGS=ON -DBUILD_SHARED_LIBS=ON -DBUILD_CLI_EXECUTABLES=ON -DTEST_VERBOSE=no -DBUILD_TESTS=no -DDEBUG=no -DPROFILE=no -DARMA_EXTRA_DEBUG=no -DUSE_OPENMP=yes -DMATLAB_BINDINGS=no -DBUILD_GO_SHLIB=yes -DBUILD_JULIA_BINDINGS=yes -DBUILD_GO_BINDINGS=yes -DBUILD_R_BINDINGS=yes -DBUILD_MARKDOWN_BINDINGS=no -DMATHJAX=no -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2 | |
loading initial cache file /var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2_build/gentoo_common_config.cmake | |
-- The C compiler identification is GNU 10.2.0 | |
-- The CXX compiler identification is GNU 10.2.0 | |
-- Detecting C compiler ABI info | |
-- Detecting C compiler ABI info - done | |
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc - skipped | |
-- Detecting C compile features | |
-- Detecting C compile features - done | |
-- Detecting CXX compiler ABI info | |
-- Detecting CXX compiler ABI info - done | |
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped | |
-- Detecting CXX compile features | |
-- Detecting CXX compile features - done | |
-- cotire 1.7.10 loaded. | |
-- Looking for pthread.h | |
-- Looking for pthread.h - found | |
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed | |
-- Looking for pthread_create in pthreads | |
-- Looking for pthread_create in pthreads - not found | |
-- Looking for pthread_create in pthread | |
-- Looking for pthread_create in pthread - found | |
-- Found Threads: TRUE | |
-- Found Armadillo: /usr/lib64/libarmadillo.so (found suitable version "10.3.0", minimum required is "8.400.0") | |
-- Found StbImage: /usr/include/stb/ | |
-- Found Ensmallen: /usr/include (found suitable version "2.16.2", minimum required is "2.10.0") | |
-- Found Boost: /usr/include (found suitable version "1.76.0", minimum required is "1.58") found components: unit_test_framework serialization | |
-- Found OpenMP_C: -fopenmp (found version "4.5") | |
-- Found OpenMP_CXX: -fopenmp (found version "4.5") | |
-- Found OpenMP: TRUE (found version "4.5") | |
-- Found Git: /usr/bin/git (found version "2.31.1") | |
-- Regenerating arma_config.hpp. | |
-- Found Julia: /usr/bin/julia (found suitable version "1.6.0", minimum required is "0.7.0") | |
-- Not building Markdown bindings. | |
-- Found PythonInterp: /var/tmp/portage/sci-libs/mlpack-3.4.2/temp/python3.8/bin/python (found version "3.8.10") | |
-- Found PY_distutils: /usr/lib/python3.8/distutils | |
-- Found PY_Cython: /usr/lib/python3.8/site-packages/Cython | |
-- Found PY_numpy: /usr/lib/python3.8/site-packages/numpy | |
-- Found PY_pandas: /usr/lib/python3.8/site-packages/pandas | |
-- Found Go: /usr/bin/go (found suitable version "6.4", minimum required is "1.11.0") | |
no required module provides package gonum.org/v1/gonum/mat: go.mod file not found in current directory or any parent directory; see 'go help modules' | |
-- Gonum not found (missing: GONUM_VERSION_STRING) | |
CMake Error at src/mlpack/bindings/go/CMakeLists.txt:59 (message): | |
Could not Build Go Bindings; the following modules are not available: | |
- Gonum | |
-- Configuring incomplete, errors occurred! | |
See also "/var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2_build/CMakeFiles/CMakeOutput.log". | |
See also "/var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2_build/CMakeFiles/CMakeError.log". | |
* ERROR: sci-libs/mlpack-3.4.2::science failed (configure phase): | |
* cmake failed | |
* | |
* Call stack: | |
* ebuild.sh, line 127: Called src_configure | |
* environment, line 4288: Called cmake_src_configure | |
* environment, line 2622: Called die | |
* The specific snippet of code: | |
* "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; | |
* | |
* If you need support, post the output of `emerge --info '=sci-libs/mlpack-3.4.2::science'`, | |
* the complete build log and the output of `emerge -pqv '=sci-libs/mlpack-3.4.2::science'`. | |
* The complete build log is located at '/var/log/portage/build/sci-libs/mlpack-3.4.2:20210530-163101.log'. | |
* For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/mlpack-3.4.2/temp/build.log'. | |
* The ebuild environment file is located at '/var/tmp/portage/sci-libs/mlpack-3.4.2/temp/environment'. | |
* Working directory: '/var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2_build' | |
* S: '/var/tmp/portage/sci-libs/mlpack-3.4.2/work/mlpack-3.4.2' | |
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