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Alex-Rosenberg/read_data_GSE110823.py

Created March 21, 2018 16:46
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read_data_GSE110823.py
import scipy.io as sio
import pandas as pd
#Load Data
data = sio.loadmat('<your path>/GSM3017261_150000_CNS_nuclei.mat')
#Digital Expression Matrix
DGE = data['DGE']
#Genes
genes = pd.Series(data['genes']).str.strip(' ')
#Sample types
sample_type = pd.Series(data['sample_type']).str.strip(' ')
#Main cluster assignment
cluster_assignment = pd.Series(data['cluster_assignment']).str.strip(' ')
#Spinal cluster assignment
spinal_cluster_assignment = pd.Series(data['spinal_cluster_assignment']).str.strip(' ')
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