install_julia_pkg_unipc.sh

#
# This script should run as root
# We assume that the student's account is called "etudiant".
#

JULIA_VERSION=1.8.3
USER=etudiant

# array with major, minor and revision number
JULIA_VERSION_PARTS=( ${JULIA_VERSION//./ } )
# just major and minor number
JULIA_VERSION_SHORT=${JULIA_VERSION_PARTS[0]}.${JULIA_VERSION_PARTS[1]}

mkdir -p /opt

if ! command -v julia &> /dev/null; then
  cd /opt
  wget https://julialang-s3.julialang.org/bin/linux/x64/$JULIA_VERSION_SHORT/julia-$JULIA_VERSION-linux-x86_64.tar.gz

  tar -xvf julia-$JULIA_VERSION-linux-x86_64.tar.gz
  rm julia-$JULIA_VERSION-linux-x86_64.tar.gz
  mv julia-* julia-$JULIA_VERSION
  ln -s /opt/julia-$JULIA_VERSION/bin/julia /usr/local/bin
fi

# DINEOF
sudo apt-get update
sudo apt-get install -y gfortran make libarpack2-dev libnetcdf-dev libnetcdff-dev netcdf-bin
sudo apt-get install -y python3-pip python3-setuptools python3-matplotlib libffi-dev curl emacs tmux
sudo apt-get install -y perl libopenmpi-dev openmpi-bin desktop-file-utils
sudo apt-get install -y subversion git

su --login "$USER" <<'EOF'
echo 'export PATH="$HOME/.local/bin:$PATH"' >> ~/.bashrc

python3 -m pip install --user jupyter
python3 -m pip install --user motuclient==1.8.6

julia --eval 'using Pkg; pkg"add ZMQ IJulia PyCall PyPlot Interpolations MAT JSON SpecialFunctions Interact Roots JLD2 FileIO Revise"'
julia --eval 'using Pkg; pkg"add Glob NCDatasets CSV DataStructures Compat Mustache HTTP PhysOcean DIVAnd Missings DistributedArrays"'
julia --eval 'using Pkg; pkg"dev https://github.com/Alexander-Barth/ROMS.jl"'
julia --eval 'using IJulia'
julia --eval 'using PyPlot'


mkdir -p ~/.julia/config/
cat >>  ~/.julia/config/startup.jl <<E-O-F
using Revise
E-O-F


# Install a desktop launcher and icon for julia
wget -O /tmp/julia.desktop https://raw.githubusercontent.com/JuliaLang/julia/e90f29db30f81f340d4f36669b27ac5a281e2a7f/contrib/julia.desktop
desktop-file-install --dir=$HOME/.local/share/applications /tmp/julia.desktop
mkdir -p ~/.local/share/icons/hicolor/scalable/apps/
wget -O ~/.local/share/icons/hicolor/scalable/apps/julia.svg https://raw.githubusercontent.com/JuliaLang/julia/30bf89f3d8e564b588b8e48993e92a551b384f2c/contrib/julia.svg

# Install a desktop launcher and icon for jupyter
mkdir /home/$USER/.icons
wget -O /home/$USER/.icons/jupyter.svg https://raw.githubusercontent.com/jupyter/jupyter.github.io/3e468a804b5608312c553feb2b9964cc9a8ab9b8/assets/main-logo.svg
cat   > /tmp/jupyter.desktop  <<E-O-F
[Desktop Entry]
Version=1.0
Type=Application
Name=Jupyter
Icon=/home/$USER/.icons/jupyter.svg
Exec=/home/$USER/.local/bin/jupyter notebook %F
Path=/home/$USER
Comment=Jupyter notebook
MimeType=application/x-ipynb+json;
Categories=Development;ComputerScience;Science;Math;NumericalAnalysis;DataVisualization;
Terminal=true
X-Desktop-File-Install-Version=0.22
E-O-F
desktop-file-install --dir=$HOME/.local/share/applications /tmp/jupyter.desktop

EOF