Comparison of 2 version of pet for issue 72

PET_issue_72.sh

set -e
# Path of py eddy tracker code
PWD_PET="/home/tinou/dev/py-eddy-tracker"
cd $PWD_PET
# Get a version at commit ...
# PET is installed with python setup.py develop, so need of installation after checkout
git checkout e7672381b39c32de30a7d2c3c22a30969c8c31e9
cd -
# Create ouput directory
mkdir -p old_version
# Run old version
EddyId \
    -v DEBUG --isoline_step 0.002 --fit_err 70 \
    $PWD_PET/src/py_eddy_tracker/data/dt_med_allsat_phy_l4_20160515_20190101.nc \
    20160515 \
    adt \
    None \
    None \
    longitude \
    latitude \
    old_version/


cd $PWD_PET
git checkout master
cd -

mkdir -p new_version
# Run current version, with a specific sampling to be coherent with old version
EddyId \
    -v DEBUG --isoline_step 0.002 --fit_err 70 --sampling 50 --sampling_method uniform \
    $PWD_PET/src/py_eddy_tracker/data/dt_med_allsat_phy_l4_20160515_20190101.nc \
    20160515 \
    adt \
    None \
    None \
    longitude \
    latitude \
    new_version/

# Run a tools to have a quick summary
# 94 % of eddies occupy same area but few differences which must be investigate
EddyQuickCompare *_version/Anticyclonic_20160515.nc --high 99.99 --low 80 --invalid 50
# [ref] new_version/Anticyclonic_20160515.nc -> 64 obs
# [0] old_version/Anticyclonic_20160515.nc -> 65 obs
#           nomatch    50 <= low < 80  intermediate    100 <= high    multi_match      parent          twin          complex    
# [ 0]     0.0% (0)       3.1% (2)       3.1% (2)      93.8% (60)      0.0% (0)       0.0% (0)       0.0% (0)       0.0% (0)    
#      Point of view of study dataset
#           nomatch    50 <= low < 80  intermediate    100 <= high    multi_match      parent          twin          complex    
# [ 0]     1.5% (1)       3.1% (2)       3.1% (2)      92.3% (60)      0.0% (0)       0.0% (0)       0.0% (0)       0.0% (0)