AswinSSoman

for 4.2.4 or higher,4.2.5,4.2.6,4.3.7，it's works ， this is the way which makes Always in evaluation mode 。

1. open Terminal, go to the dir : cd /Applications/Beyond Compare.app/Contents/MacOS
2. change the name BCompare to BCompare.bak: mv BCompare BCompare.bak
3. touch a file name BCompare , and chmod a+u BCompare : touch BCompare && chmod a+u BCompare
4. open BCompare with text editor, insert the script :

#!/bin/bash
rm "/Users/$(whoami)/Library/Application Support/Beyond Compare/registry.dat"
"`dirname "$0"`"/BCompare.bak $@

AswinSSoman

#!/usr/bin/env perl

=head1 NAME

bam2circos.pl - Convert BAM file to Circos plot

=head1 SYNOPSIS

bam2circos.pl [optional] -b FILE

AswinSSoman

#!/usr/local/bin/perl

# 
# Perl script treefam_genelosses.pl
# Written by Avril Coghlan (alc@sanger.ac.uk).
# 28-Aug-06.  
#
# For the TreeFam project.
#
# This perl script connects to the MYSQL database of

AswinSSoman

You can use IGV to automatically & programmatically load genomic datasets and take snapshots of regions of interest. This is very handy and helps you avoid taking many screenshots manually.

Manual page here:

http://software.broadinstitute.org/software/igv/batch

These commands are also available:

http://software.broadinstitute.org/software/igv/PortCommands

AswinSSoman

Install Samtools, BCFTools and htslib on linux

Install some build dependencies

sudo apt-get install autoconf automake make gcc perl zlib1g-dev libbz2-dev liblzma-dev libcurl4-gnutls-dev libssl-dev libncurses5-dev

[samtools]

AswinSSoman

#!/bin/env perl

use strict;
use warnings;

use Getopt::Long;
use Pod::Usage;
use Bio::EnsEMBL::Registry;
use Bio::EnsEMBL::Utils::Scalar qw(wrap_array);
use IO::String;

AswinSSoman

FILES

mkdir - create directory

touch 1.txt - create file

touch {1,2,3}.txt - create 1.txt 2.txt and 3.txt

rm - remove file or dir

AswinSSoman

Basics of Linux

This guide is designed to help new users understand the more important aspects of Linux. It is not meant to be an exhaustive tutorial, but rather a primer.

---

Introduction

Linux (or GNU/Linux) isn't one singular operating system as many people believe it to be, but rather a broader term for a large number of operating systems built using the Linux kernel. These different operating systems are referred to as distributions or "distros". Different Linux distributions use the same mostly the same software but are packaged and setup differently. Many, if not most, distros are based of off other more popular distros. The major differences that the average user notices are in what desktop environment the distro uses, and how/where software is managed and installed from.