GSoC 2022 - Department of Bioinformatics, Emory University

gsoc2022.md

Google Summer of Code 2022 Department of Biomedical Informatics, Emory University

Project Information

Project Name: Adopt DHGWorkflow for concore with a seamless integration

Mentor: Nan Li, Mark Arnold (markgarnold@yahoo.com), and Shubham Awasthi (aw.shubh@gmail.com)
Student: Aviral Kumar Goel

Project Description

This project aims to integrate the concore framework in the DHGWorkflow in a user friendly way so that users can define custom validations as well as import, visualize and manipulate concore workflows with ease.

Work Done

1. Added a FileBrowser UI to upload folders in the browser.
2. Upload button - Added support for diffferent APIs in different browsers. 2a. FileSystemAccessAPI in Chrome/Edge 2b. FileAPI in Firefox and others
3. Added a syntax highlighter for other code files.
4. Added feature to save modified graphML files from the browser itself. (Chrome/Edge)
5. Added feature to save modified code files from browser itself. (Chrome/Edge)
6. Save As button - Added feature to create new graphML/code file and save it the directory of choice. (Chrome/Edge)
7. Added server operations buttons.
8. Did UI changes to move from DHGWorkflow -> concore-Editor.
9. Filelist based filtering for node labels in graphML files.

Demo at website

GitHub Reposiotry

Major PRs List

PR	Description
#1	GSoC code challenge solution
#2	Added Filebrowser UI
#3	Added FileAPI support
#5	UI changes to transition from DHGWorkflow to concore
#15	Implementation of save feature in Edge/Chrome
#42	Create files and save files features