kipoi_example.bash

# Create and activate a new conda environment
# with all model dependencies installed
kipoi env create <Model>
source activate kipoi-<Model>

# Run model predictions and save the results
# sequentially into an HDF5 file
kipoi predict <Model> --dataloader_args='{
  "intervals_file": "intervals.bed",
  "fasta_file": "hg38.fa"}' \
  -o '<Model>.preds.h5'