Created
March 5, 2024 00:33
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Modified Galprop install script (on Arch linux - boost, clhep required)
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| #!/usr/bin/env bash | |
| # Below are 2 example settings to build for OSX (10.15) or Linux (CentOS 8). Uncomment/modify the variables appropriate for your system -- you need to set these system variables | |
| # User-defined variables -- this example is for OSX using a macports installation for the various tools | |
| #MY_CMAKE=/opt/local/bin/cmake | |
| #MY_AUTOCONF=/opt/local/bin/autoconf | |
| #MY_CC=/opt/local/bin/clang-mp-12 | |
| #MY_CXX=/opt/local/bin/clang++-mp-12 | |
| #MY_FC=/opt/local/bin/gfortran-mp-11 | |
| # User-defined variables -- this example is for CentOS 7 using devtoolset-10 system tools | |
| MY_CMAKE=cmake | |
| MY_AUTOCONF=autoconf | |
| MY_CC=/usr/bin/gcc | |
| MY_CXX=/usr/bin/g++ | |
| MY_FC=/usr/bin/gfortran | |
| # Set this to > 1 to use multiple threads during the build process | |
| MY_BUILD_THREAD_NUMBER=8 | |
| ###----- Alter below if further system customisation is needed -----### | |
| # Additional compiler options. The `-march=native' flag is for gcc. Needs to be commented (or altered) for clang. | |
| MY_CXX_FLAGS="-march=native" | |
| MY_FC_FLAGS="-march=native" | |
| # Install directory | |
| INSTALL_DIRECTORY=$(pwd) | |
| # System type variables | |
| case "$OSTYPE" in | |
| darwin*) | |
| MY_OS_BOOST_TOOLSET=clang | |
| MY_OS_SHAREDLIB_SUFFIX=dylib | |
| MY_OS_SHAREDLIB_PATH_VAR=DYLD_LIBRARY_PATH | |
| MY_RC_FILE=.bash_profile | |
| ;; | |
| linux*) | |
| MY_OS_BOOST_TOOLSET=gcc | |
| MY_OS_SHAREDLIB_SUFFIX=so | |
| MY_OS_SHAREDLIB_PATH_VAR=LD_LIBRARY_PATH | |
| MY_RC_FILE=.zshrc | |
| ;; | |
| *) echo "unknown: $OSTYPE" | |
| exit | |
| ;; | |
| esac | |
| # Define colours | |
| RED="\033[0;31m" | |
| GREEN="\033[0;32m" | |
| PC="\033[0;35m" | |
| TC="\033[0;36m" | |
| NC="\033[0m" | |
| # Configuration/build/install logging. Can change to /dev/null for silent. | |
| LOG_DIRECTORY=${INSTALL_DIRECTORY}/log | |
| function command_exists() { | |
| type "$1" &>/dev/null | |
| } | |
| function delete_build() { | |
| for DIRS in "lib/cfitsio-4.0.0" "lib/build/cfitsio-4.0.0" "lib/CCfits-2.6" "lib/build/CCfits-2.6" "lib/Healpix_3.50" "lib/build/Healpix_3.50" "lib/build/wcslib-7.7" "lib/wcslib-7.7" "lib/build/xerces-c-3.2.3" "lib/xerces-c-3.2.3" "lib/gsl-2.7" "lib/build/gsl-2.7" "lib/build/galtoolslib-1.1.1006" "lib/galtoolslib-1.1.1006-Source" "lib/build/eigen-3.4.0" "lib/eigen-3.4.0" "lib/build/CLHEP-2.4.4.2" "lib/2.4.4.2" "lib/build/boost_1_76_0" "lib/boost_1_76_0" "lib/build/Minuit2" "lib/build" "build" "GALPROP-57.0.3032"; do | |
| rm -rf ${DIRS} | |
| done | |
| } | |
| function clean_up() { | |
| for DIRS in "lib/cfitsio-4.0.0" "lib/CCfits-2.6" "lib/Healpix_3.50" "lib/wcslib-7.7" "lib/xerces-c-3.2.3" "lib/gsl-2.7" "lib/galtoolslib-1.1.1006-Source" "lib/eigen-3.4.0" "lib/2.4.4.2" "lib/boost_1_76_0" "lib/Minuit2"; do | |
| rm -rf ${DIRS} | |
| done | |
| } | |
| function initial_check() { | |
| if ! command_exists ${MY_CC}; then | |
| echo -e "--- ${RED}Error:${NC} C compiler not found. Please install C compiler!" | |
| exit | |
| fi | |
| if ! command_exists ${MY_CXX}; then | |
| echo -e "--- ${RED}Error:${NC} C++ compiler not found. Please install C++ compiler!" | |
| exit | |
| fi | |
| if ! command_exists ${MY_FC}; then | |
| echo -e "--- ${RED}Error:${NC} Fortran compiler not found. Please install Fortran compiler!" | |
| exit | |
| fi | |
| if ! command_exists ${MY_CMAKE}; then | |
| echo -e "--- ${RED}Error:${NC} cmake not found. Please install cmake!" | |
| exit | |
| fi | |
| if ! command_exists ${MY_AUTOCONF}; then | |
| echo -e "--- ${RED}Error:${NC} autoconf not found. Please install autotools!" | |
| exit | |
| fi | |
| if [ ! -d "lib" ]; then | |
| echo -e "--- ${RED}Error:${NC} support library directory not found (incomplete GALPROP package?)" | |
| exit | |
| fi | |
| if [ ! -d "source" ]; then | |
| echo -e "--- ${RED}Error:${NC} source directory not found (incomplete GALPROP package?)" | |
| exit | |
| fi | |
| } | |
| function install_support_libraries() { | |
| if ! command_exists ${MY_CC}; then | |
| echo -e "--- ${RED}Error:${NC} C compiler not found. Please install C compiler!" | |
| exit | |
| fi | |
| if ! command_exists ${MY_CXX}; then | |
| echo -e "--- ${RED}Error:${NC} C++ compiler not found. Please install C++ compiler!" | |
| exit | |
| fi | |
| if ! command_exists ${MY_FC}; then | |
| echo -e "--- ${RED}Error:${NC} Fortran compiler not found. Please install Fortran compiler!" | |
| exit | |
| fi | |
| # Check for necessary programs 1 | |
| if ! command_exists ${MY_CMAKE}; then | |
| echo -e "--- ${RED}Error:${NC} cmake not found." | |
| exit | |
| fi | |
| # Check for necessary programs 2 | |
| if ! command_exists ${MY_AUTOCONF}; then | |
| echo -e "--- ${RED}Error:${NC} autoconf not found." | |
| exit | |
| fi | |
| echo -e "${PC}--- Install required libraries ---${NC}" | |
| if [ ! -d "lib" ]; then | |
| echo -e "--- ${RED}Error:${NC} lib directory not found (incomplete package?)" | |
| exit | |
| fi | |
| cd "lib" | |
| echo -e "Install cfitsio" | |
| if [ ! -f "cfitsio-4.0.0/build/CMakeCache.txt" ] && [ -d "cfitsio-4.0.0/" ]; then | |
| rm -r "cfitsio-4.0.0/" | |
| fi | |
| if [ ! -d "cfitsio-4.0.0" ]; then | |
| tar -xf cfitsio-4.0.0.tar.gz | |
| fi | |
| cd "cfitsio-4.0.0" | |
| echo -ne "- Configure cfitsio ... "\\r | |
| if [ ! -d "build" ]; then | |
| mkdir "build" | |
| fi | |
| cd "build" | |
| ${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0 -DCMAKE_C_COMPILER=${MY_CC} -DUSE_CURL=OFF -DCMAKE_BUILD_TYPE=$2 -DBUILD_SHARED_LIBS=$1 >${LOG_DIRECTORY}/cfitsio-4.0.0-config-log 2>&1 && | |
| echo -e "- Configure cfitsio [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Configure cfitsio [${RED}Error${NC}]" | |
| exit | |
| } | |
| echo -ne "- Compile cfitsio ... "\\r | |
| make VERBOSE=1 -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/cfitsio-4.0.0-build-log 2>&1 && | |
| echo -e "- Compile cfitsio [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Compile cfitsio [${RED}Error${NC}]" | |
| exit | |
| } | |
| make install >${LOG_DIRECTORY}/cfitsio-4.0.0-install-log 2>&1 && | |
| echo -e "- Local install of cfitsio [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Local install cfitsio [${RED}Error${NC}]" | |
| exit | |
| } | |
| cd ${INSTALL_DIRECTORY}/lib | |
| echo -e "Install wcslib" | |
| if [ ! -d "wcslib-7.7" ]; then | |
| tar -xf wcslib-7.7.tar.bz2 | |
| fi | |
| cd "wcslib-7.7" | |
| echo -ne "- Configure wcslib ... "\\r | |
| ./configure CC=${MY_CC} F77=${MY_FC} --prefix=${INSTALL_DIRECTORY}/lib/build/wcslib-7.7 CFLAGS="-fPIC -g -O2" --disable-flex --with-cfitsiolib=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib --with-cfitsioinc=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/include >${LOG_DIRECTORY}/wcslib-7.7-config-log 2>&1 && | |
| echo -e "- Configure wcslib [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Configure wcslib [${RED}Error${NC}]" | |
| exit | |
| } | |
| echo -ne "- Compile wcslib ... "\\r | |
| make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/wcslib-7.7-build-log 2>&1 && | |
| echo -e "- Compile wcslib [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Compile wcslib [${RED}Error${NC}]" | |
| exit | |
| } | |
| make install >${LOG_DIRECTORY}/wcslib-7.7-install-log 2>&1 && | |
| echo -e "- Local install of wcslib [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Local install wcslib [${RED}Error${NC}]" | |
| exit | |
| } | |
| cd ${INSTALL_DIRECTORY}/lib | |
| echo -e "Install CCfits" | |
| if [ ! -f "CCfits-2.6/build/CMakeCache.txt" ] && [ -d "CCfits-2.6/" ]; then | |
| rm -r "CCfits-2.6/" | |
| fi | |
| if [ ! -d "CCfits-2.6" ]; then | |
| tar -xf CCfits-2.6.tar.gz | |
| fi | |
| cd "CCfits-2.6" | |
| echo -ne "- Configure CCfits ... "\\r | |
| if [ ! -d "build" ]; then | |
| mkdir "build" | |
| fi | |
| cd "build" | |
| ${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/CCfits-2.6 -DCMAKE_CXX_COMPILER=${MY_CXX} -DCMAKE_BUILD_TYPE=$2 -DBUILD_SHARED_LIBS=$1 -DCMAKE_PREFIX_PATH="${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0" >${LOG_DIRECTORY}/CCfits-2.6-config-log 2>&1 && | |
| echo -e "- Configure CCfits [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Configure CCfits [${RED}Error${NC}]" | |
| exit | |
| } | |
| echo -ne "- Compile CCfits ... "\\r | |
| make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/CCfits-2.6-build-log 2>&1 && | |
| echo -e "- Compile CCfits [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Compile CCfits [${RED}Error${NC}]" | |
| exit | |
| } | |
| make install >${LOG_DIRECTORY}/CCfits-2.6-install-log 2>&1 && | |
| echo -e "- Local install of CCfits [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Local install CCfits [${RED}Error${NC}]" | |
| exit | |
| } | |
| cd ${INSTALL_DIRECTORY}/lib | |
| echo -e "Install Healpix" | |
| if [ ! -d "Healpix_3.50" ]; then | |
| tar -xf Healpix_3.50.tar.gz | |
| fi | |
| cd "Healpix_3.50" | |
| echo -ne "- Configure Healpix ... "\\r | |
| cd "src/cxx" | |
| ${MY_AUTOCONF} &> /dev/null 2>&1 | |
| ./configure CC=${MY_CC} CXX=${MY_CXX} --with-libcfitsio-lib=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib CPPFLAGS="-fPIC" --with-libcfitsio-include=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/include >${LOG_DIRECTORY}/Healpix_3.50-config-log 2>&1 && | |
| echo -e "- Configure Healpix [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Configure Healpix [${RED}Error${NC}]" | |
| exit | |
| } | |
| echo -ne "- Compile Healpix ... "\\r | |
| make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/Healpix_3.50-build-log 2>&1 && | |
| echo -e "- Compile Healpix [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Compile Healpix [${RED}Error${NC}]" | |
| exit | |
| } | |
| cd ${INSTALL_DIRECTORY}/lib/build | |
| if [ ! -d "Healpix_3.50" ]; then | |
| mkdir Healpix_3.50 | |
| fi | |
| cd Healpix_3.50 | |
| if [ -d "auto" ]; then | |
| rm -r auto | |
| fi | |
| cd ${INSTALL_DIRECTORY}/lib/Healpix_3.50/src/cxx | |
| mv auto ${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/ | |
| echo -e "- Local install of Healpix [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Local install Healpix [${RED}Error${NC}]" | |
| exit | |
| } | |
| cd ${INSTALL_DIRECTORY}/lib | |
| echo -e "Install xerces-c" | |
| if [ ! -f "xerces-c-3.2.3/build/CMakeCache.txt" ] && [ -d "xerces-c-3.2.3/" ]; then | |
| rm -r "xerces-c-3.2.3/" | |
| fi | |
| if [ ! -d "xerces-c-3.2.3" ]; then | |
| tar -xf xerces-c-3.2.3.tar.bz2 | |
| fi | |
| cd "xerces-c-3.2.3" | |
| echo -ne "- Configure xerces-c ... "\\r | |
| if [ ! -d "build" ]; then | |
| mkdir "build" | |
| fi | |
| cd "build" | |
| ${MY_CMAKE} .. -G "Unix Makefiles" -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3 -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_CXX_COMPILER=${MY_CXX} -DBUILD_SHARED_LIBS=$1 -DCMAKE_BUILD_TYPE=$2 >${LOG_DIRECTORY}/xerces-c-3.2.3-config-log 2>&1 && | |
| echo -e "- Configure xerces-c [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Configure xerces-c [${RED}Error${NC}]" | |
| exit | |
| } | |
| echo -ne "- Compile xerces-c ... "\\r | |
| make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/xerces-c-3.2.3-build-log 2>&1 && | |
| echo -e "- Compile xerces-c [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Compile xerces-c [${RED}Error${NC}]" | |
| exit | |
| } | |
| make install >${LOG_DIRECTORY}/xerces-c-3.2.3-install-log 2>&1 && | |
| echo -e "- Local install of xerces-c [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Local install xerces-c [${RED}Error${NC}]" | |
| exit | |
| } | |
| cd ${INSTALL_DIRECTORY}/lib | |
| echo -e "Install gsl" | |
| if [ ! -d "gsl-2.7" ]; then | |
| tar -xf gsl-2.7.tar.gz | |
| fi | |
| cd "gsl-2.7" | |
| echo -ne "- Configure gsl ... "\\r | |
| ./configure CC=${MY_CC} FC=${MY_FC} --prefix=${INSTALL_DIRECTORY}/lib/build/gsl-2.7 >${LOG_DIRECTORY}/gsl-2.7-config-log 2>&1 && | |
| echo -e "- Configure gsl [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Configure gsl [${RED}Error${NC}]" | |
| exit | |
| } | |
| echo -ne "- Compile gsl ... "\\r | |
| make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/gsl-2.7-build-log 2>&1 && | |
| echo -e "- Compile gsl [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Compile gsl [${RED}Error${NC}]" | |
| exit | |
| } | |
| make install >${LOG_DIRECTORY}/gsl-2.7-install-log 2>&1 && | |
| echo -e "- Local install of gsl [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Local install gsl [${RED}Error${NC}]" | |
| exit | |
| } | |
| cd ${INSTALL_DIRECTORY}/lib | |
| #echo -e "Install boost" | |
| #if [ ! -d "boost_1_76_0" ]; then | |
| # tar -xf boost_1_76_0.tar.bz2 | |
| #fi | |
| #cd "boost_1_76_0" | |
| #if [ ! -d "build" ]; then | |
| # mkdir "build" | |
| #fi | |
| #echo -ne "- Configure boost ... "\\r | |
| #cd "tools/build" | |
| #./bootstrap.sh --cxx=${MY_CXX} -std=c++11 >${LOG_DIRECTORY}/boost_1_76_0-install-bootstrap-log 2>&1 | |
| #./b2 install --prefix=${INSTALL_DIRECTORY}/lib/boost_1_76_0/build >${LOG_DIRECTORY}/boost_1_76_0-config-log 2>&1 | |
| #cd ${INSTALL_DIRECTORY}/lib/boost_1_76_0 | |
| #echo -ne "- Compile and install boost ... "\\r | |
| #build/bin/b2 install --prefix=${INSTALL_DIRECTORY}/lib/build/boost_1_76_0 --with-system --with-filesystem --with-serialization --with-math toolset=${MY_OS_BOOST_TOOLSET} variant=release runtime-link=shared threading=multi stage >${LOG_DIRECTORY}/boost_1_76_0-install-log 2>&1 && | |
| #echo -e "- Local install of boost [${GREEN}done${NC}]" || | |
| #{ | |
| # echo -e "- Local install boost [${RED}Error${NC}]" | |
| # exit | |
| #} | |
| #cd ${INSTALL_DIRECTORY}/lib | |
| #echo -e "Install CLHEP" | |
| #if [ ! -f "2.4.4.2/build/CMakeCache.txt" ] && [ -d "2.4.4.2/" ]; then | |
| # rm -r "2.4.4.2/" | |
| #fi | |
| #if [ ! -d "2.4.4.2" ]; then | |
| # tar -xf clhep-2.4.4.2.tgz | |
| #fi | |
| #cd "2.4.4.2" | |
| #echo -ne "- Configure CLHEP ... "\\r | |
| #if [ ! -d "build" ]; then | |
| # mkdir "build" | |
| #fi | |
| #cd "build" | |
| #${MY_CMAKE} ../CLHEP -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/CLHEP-2.4.4.2 -DCMAKE_CXX_COMPILER=${MY_CXX} -DCMAKE_C_COMPILER=${MY_CC} -DBUILD_SHARED_LIBS=$1 -DCMAKE_BUILD_TYPE=$2 >${LOG_DIRECTORY}/CLHEP-2.4.4.2-config-log 2>&1 && | |
| #echo -e "- Configure CLHEP [${GREEN}done${NC}]" || | |
| #{ | |
| # echo -e "- Configure CLHEP [${RED}Error${NC}]" | |
| # exit | |
| #} | |
| #echo -ne "- Compile CLHEP ... "\\r | |
| #make -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/CLHEP-2.4.4.2-build-log 2>&1 && | |
| #echo -e "- Compile CLHEP [${GREEN}done${NC}]" || | |
| #{ | |
| # echo -e "- Compile CLHEP [${RED}Error${NC}]" | |
| # exit | |
| #} | |
| #make install >${LOG_DIRECTORY}/CLHEP-2.4.4.2-install-log 2>&1 && | |
| #echo -e "- Local install of CLHEP [${GREEN}done${NC}]" || | |
| #{ | |
| # echo -e "- Local install CLHEP [${RED}Error${NC}]" | |
| # exit | |
| #} | |
| #cd ${INSTALL_DIRECTORY}/lib | |
| echo -e "Install galtoolslib" | |
| if [ ! -f "galtoolslib-1.1.1006-Source/build/CMakeCache.txt" ] && [ -d "galtoolslib-1.1.1006-Source/" ]; then | |
| rm -r "galtoolslib-1.1.1006-Source/" | |
| fi | |
| if [ ! -d "galtoolslib-1.1.1006-Source" ]; then | |
| tar -xf galtoolslib-1.1.1006-Source.tar.gz | |
| fi | |
| cd "galtoolslib-1.1.1006-Source" | |
| echo -ne "- Configure galtoolslib ... "\\r | |
| if [ ! -d "build" ]; then | |
| mkdir "build" | |
| fi | |
| cd "build" | |
| # Xerces sets up different default build targets based on OS. Need to substitute correct path for the `lib' directory -- it can be `lib64' or `lib' | |
| if [ -d "${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64" ]; then | |
| ${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006 -DCMAKE_CXX_COMPILER=${MY_CXX} -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_Fortran_COMPILER=${MY_FC} -DCMAKE_BUILD_TYPE=$2 -DBUILD_SHARED_LIBS=$1 -DCMAKE_PREFIX_PATH="/usr" -DCfitsio_INC=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/include -DCfitsio_LIB=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib/ -DCCfits_PREFIX=${INSTALL_DIRECTORY}/lib/build/CCfits-2.6 -DWCS_PREFIX=${INSTALL_DIRECTORY}/lib/build/wcslib-7.7 -DHEALPix_PREFIX=${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto -DGSL_CONFIG=${INSTALL_DIRECTORY}/lib/build/gsl-2.7/bin/gsl-config -DXERCESC_INCLUDE=${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/include -DXERCESC_LIBRARY=${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64/libxerces-c.${MY_OS_SHAREDLIB_SUFFIX} >${LOG_DIRECTORY}/galtoolslib-config-log 2>&1 | |
| else | |
| ${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006 -DCMAKE_CXX_COMPILER=${MY_CXX} -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_Fortran_COMPILER=${MY_FC} -DCMAKE_BUILD_TYPE=$2 -DBUILD_SHARED_LIBS=$1 -DCMAKE_PREFIX_PATH="/usr" -DCfitsio_INC=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/include -DCfitsio_LIB=${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib/ -DCCfits_PREFIX=${INSTALL_DIRECTORY}/lib/build/CCfits-2.6 -DWCS_PREFIX=${INSTALL_DIRECTORY}/lib/build/wcslib-7.7 -DHEALPix_PREFIX=${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto -DGSL_CONFIG=${INSTALL_DIRECTORY}/lib/build/gsl-2.7/bin/gsl-config -DXERCESC_INCLUDE=${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/include -DXERCESC_LIBRARY=${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib/libxerces-c.${MY_OS_SHAREDLIB_SUFFIX} >${LOG_DIRECTORY}/galtoolslib-config-log 2>&1 | |
| fi && | |
| echo -e "- Configure galtoolslib [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Configure galtoolslib [${RED}Error${NC}]" | |
| exit | |
| } | |
| echo -ne "- Compile galtoolslib ... "\\r | |
| make VERBOSE=1 -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/galtoolslib-build-log 2>&1 && | |
| echo -e "- Compile galtoolslib [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Compile galtoolslib [${RED}Error${NC}]" | |
| exit | |
| } | |
| make install >${LOG_DIRECTORY}/galtoolslib-install-log 2>&1 && | |
| echo -e "- Local install of galtoolslib [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Local install galtoolslib [${RED}Error${NC}]" | |
| exit | |
| } | |
| cd ${INSTALL_DIRECTORY}/lib | |
| echo -e "Install eigen3" | |
| if [ ! -f "eigen-3.4.0/build/CMakeCache.txt" ] && [ -d "eigen-3.4.0/" ]; then | |
| rm -r "eigen-3.4.0/" | |
| fi | |
| if [ ! -d "eigen-3.4.0" ]; then | |
| tar -xf eigen-3.4.0.tar.gz | |
| fi | |
| cd "eigen-3.4.0" | |
| echo -ne "- Configure eigen3 ... "\\r | |
| if [ ! -d "build" ]; then | |
| mkdir "build" | |
| fi | |
| cd "build" | |
| ${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/eigen-3.4.0 -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_CXX_COMPILER=${MY_CXX} -DBUILD_SHARED_LIBS=$1 -DCMAKE_BUILD_TYPE=$2 -DCMAKE_CXX_FLAGS=${MY_CXX_FLAGS} -DBUILD_TESTING=OFF >${LOG_DIRECTORY}/eigen-3.4.0-config-log 2>&1 && | |
| echo -e "- Configure eigen3 [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Configure eigen3 [${RED}Error${NC}]" | |
| exit | |
| } | |
| make install >${LOG_DIRECTORY}/eigen-3.4.0-install-log 2>&1 && | |
| cd ${INSTALL_DIRECTORY}/lib/build/eigen-3.4.0/share/eigen3/cmake && | |
| if [ ! -e "EIGEN3Config.cmake" ]; then | |
| ln -s Eigen3Config.cmake EIGEN3Config.cmake >${LOG_DIRECTORY}/eigen-3.4.0-linking-log 2>&1 | |
| fi && | |
| echo -e "- Local install of eigen3 [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Local install eigen3 [${RED}Error${NC}]" | |
| exit | |
| } | |
| cd ${INSTALL_DIRECTORY}/lib | |
| echo -e "Install Minuit2 standalone" | |
| if [ ! -f "Minuit2/build/CMakeCache.txt" ] && [ -d "Minuit2/" ]; then | |
| rm -r "Minuit2/" | |
| fi | |
| if [ ! -d "Minuit2" ]; then | |
| tar -xf Minuit2.tar.gz | |
| fi | |
| cd "Minuit2" | |
| echo -ne "- Configure Minuit2 standalone ... "\\r | |
| if [ ! -d "build" ]; then | |
| mkdir "build" | |
| fi | |
| cd "build" | |
| ${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/lib/build/Minuit2 -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_CXX_COMPILER=${MY_CXX} -DBUILD_SHARED_LIBS=$1 -DCMAKE_BUILD_TYPE=$2 >${LOG_DIRECTORY}/Minuit2-config-log 2>&1 && | |
| echo -e "- Configure Minuit2 standalone [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Configure Minuit2 standalone [${RED}Error${NC}]" | |
| exit | |
| } | |
| echo -ne "- Compile Minuit2 standalone ... "\\r | |
| make VERBOSE=1 -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/Minuit2-build-log 2>&1 && | |
| echo -e "- Compile Minuit2 standalone [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Compile Minuit2 standalone [${RED}Error${NC}]" | |
| exit | |
| } | |
| make install >${LOG_DIRECTORY}/Minuit2-install-log 2>&1 && | |
| echo -e "- Local install of Minuit2 standalone [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Local install Minuit2 standalone [${RED}Error${NC}]" | |
| exit | |
| } | |
| cd ${INSTALL_DIRECTORY} | |
| clean_up >${LOG_DIRECTORY}/clean_up-log | |
| export_str="export ${MY_OS_SHAREDLIB_PATH_VAR}=\"${INSTALL_DIRECTORY}/lib/build/Minuit2/lib:${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006/lib:${INSTALL_DIRECTORY}/lib/build/boost_1_76_0/lib:${INSTALL_DIRECTORY}/lib/build/CLHEP-2.4.4.2/lib:${INSTALL_DIRECTORY}/lib/build/gsl-2.7/lib:${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib:${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto/lib:${INSTALL_DIRECTORY}/lib/build/CCfits-2.6/lib:${INSTALL_DIRECTORY}/lib/build/wcslib-7.7/lib:${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib:\$${MY_OS_SHAREDLIB_PATH_VAR}\"" | |
| if [ -d "${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64" ]; then | |
| export_str="export ${MY_OS_SHAREDLIB_PATH_VAR}=\"${INSTALL_DIRECTORY}/lib/build/Minuit2/lib:${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006/lib:${INSTALL_DIRECTORY}/lib/build/boost_1_76_0/lib:${INSTALL_DIRECTORY}/lib/build/CLHEP-2.4.4.2/lib:${INSTALL_DIRECTORY}/lib/build/gsl-2.7/lib:${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64:${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto/lib:${INSTALL_DIRECTORY}/lib/build/CCfits-2.6/lib:${INSTALL_DIRECTORY}/lib/build/wcslib-7.7/lib:${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib:\$${MY_OS_SHAREDLIB_PATH_VAR}\"" | |
| fi | |
| if ! grep -q "${export_str}" ${HOME}/${MY_RC_FILE}; then | |
| echo "${export_str}" >>${HOME}/${MY_RC_FILE} | |
| echo -e "- Update ${MY_RC_FILE} [${GREEN}done${NC}]" | |
| fi | |
| source ~/${MY_RC_FILE} | |
| } | |
| function clean_rc() { | |
| export_str="export PATH=\"${INSTALL_DIRECTORY}/bin:"'$PATH'"\"" | |
| if grep -q "${export_str}" ${HOME}/${MY_RC_FILE}; then | |
| sed -i.bak "/${export_str//\//\\/}/d" ${HOME}/${MY_RC_FILE} | |
| fi | |
| export_str="export ${MY_OS_SHAREDLIB_PATH_VAR}=\"${INSTALL_DIRECTORY}/lib/build/Minuit2/lib:${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006/lib:${INSTALL_DIRECTORY}/lib/build/boost_1_76_0/lib:${INSTALL_DIRECTORY}/lib/build/CLHEP-2.4.4.2/lib:${INSTALL_DIRECTORY}/lib/build/gsl-2.7/lib:${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib:${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto/lib:${INSTALL_DIRECTORY}/lib/build/CCfits-2.6/lib:${INSTALL_DIRECTORY}/lib/build/wcslib-7.7/lib:${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib:\$${MY_OS_SHAREDLIB_PATH_VAR}\"" | |
| if [ -d "${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64" ]; then | |
| export_str="export ${MY_OS_SHAREDLIB_PATH_VAR}=\"${INSTALL_DIRECTORY}/lib/build/Minuit2/lib:${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006/lib:${INSTALL_DIRECTORY}/lib/build/boost_1_76_0/lib:${INSTALL_DIRECTORY}/lib/build/CLHEP-2.4.4.2/lib:${INSTALL_DIRECTORY}/lib/build/gsl-2.7/lib:${INSTALL_DIRECTORY}/lib/build/xerces-c-3.2.3/lib64:${INSTALL_DIRECTORY}/lib/build/Healpix_3.50/auto/lib:${INSTALL_DIRECTORY}/lib/build/CCfits-2.6/lib:${INSTALL_DIRECTORY}/lib/build/wcslib-7.7/lib:${INSTALL_DIRECTORY}/lib/build/cfitsio-4.0.0/lib:\$${MY_OS_SHAREDLIB_PATH_VAR}\"" | |
| fi | |
| if grep -q "${export_str}" ${HOME}/${MY_RC_FILE}; then | |
| sed -i.bak "/${export_str//\//\\/}/d" ${HOME}/${MY_RC_FILE} | |
| fi | |
| } | |
| function install_galprop() { | |
| initial_check | |
| echo -e "${PC}--- Install GALPROP ---${NC}" | |
| if [ ! -d "build" ]; then | |
| mkdir "build" | |
| fi | |
| cd "build" | |
| echo -ne "Configure GALPROP ... "\\r | |
| ${MY_CMAKE} .. -DCMAKE_INSTALL_PREFIX=${INSTALL_DIRECTORY}/GALPROP-57.0.3032 -DCMAKE_CXX_COMPILER=${MY_CXX} -DCMAKE_CXX_FLAGS=${MY_CXX_FLAGS} -DCMAKE_C_COMPILER=${MY_CC} -DCMAKE_Fortran_COMPILER=${MY_FC} -DCMAKE_Fortran_FLAGS=${MY_FC_FLAGS} -DBUILD_SHARED_LIBS=$1 -DCMAKE_BUILD_TYPE=$2 -Dgaltoolslib_DIR=${INSTALL_DIRECTORY}/lib/build/galtoolslib-1.1.1006/lib/CMake -DEIGEN3_DIR=${INSTALL_DIRECTORY}/lib/build/eigen-3.4.0/share/eigen3/cmake -DMinuit2_DIR=${INSTALL_DIRECTORY}/lib/build/Minuit2/lib/cmake/Minuit2 >${LOG_DIRECTORY}/galprop-config-log 2>&1 && | |
| echo -e "- Configure GALPROP [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Configure GALPROP [${RED}Error${NC}]" | |
| exit | |
| } | |
| echo -ne "- Compile GALPROP ... "\\r | |
| make VERBOSE=1 -j${MY_BUILD_THREAD_NUMBER} >${LOG_DIRECTORY}/galprop-build-log 2>&1 && | |
| echo -e "- Compile GALPROP [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Compile GALPROP [${RED}Error${NC}]" | |
| exit | |
| } | |
| make install >${LOG_DIRECTORY}/galprop-install-log 2>&1 && | |
| echo -e "- Local install of GALPROP [${GREEN}done${NC}]" || | |
| { | |
| echo -e "- Local install GALPROP [${RED}Error${NC}]" | |
| exit | |
| } | |
| } | |
| function usage() { | |
| echo "Usage: ./install_galprop.sh [-h] [-n]" | |
| echo "" | |
| echo "Install GALPROP on your system." | |
| echo "" | |
| echo "Optional arguments:" | |
| echo "-h show this help message only." | |
| echo "-n new installation: compile support libraries and GALPROP." | |
| echo "-r clean and compile GALPROP with optimisation." | |
| echo "-d clean and compile GALPROP in debug mode." | |
| echo "-C clean all builds (support libraries and GALPROP)." | |
| echo "-D delete GALPROP and support libraries from system." | |
| echo "-u update existing GALPROP build." | |
| exit | |
| } | |
| while getopts "hoduCD" OPT; do | |
| case $OPT in | |
| C) | |
| echo -e "${TC}------ Clean support libraries and GALPROP build ------${NC}" | |
| cd ${INSTALL_DIRECTORY} | |
| delete_build >${LOG_DIRECTORY}/delete-build-log 2>&1 | |
| clean_rc | |
| exit | |
| ;; | |
| D) | |
| printf "%s\n" "Do you really want to delete your GALPROP installation [y/N]?" | |
| read really_delete | |
| case ${really_delete:=n} in | |
| [yY]*) | |
| echo -e "${TC}------ delete GALPROP ------${NC}" | |
| clean_rc >${LOG_DIRECTORY}/clean_rc-log 2>&1 | |
| cd ${INSTALL_DIRECTORY}/../ | |
| rm -rv ${INSTALL_DIRECTORY} | |
| exit | |
| ;; | |
| *) | |
| exit | |
| ;; | |
| esac | |
| ;; | |
| h) | |
| usage | |
| ;; | |
| o) | |
| echo -e "${TC}------ Recompile GALPROP in optimised mode ------${NC}" | |
| cd ${INSTALL_DIRECTORY} | |
| delete_build >${LOG_DIRECTORY}/delete-build-log 2>&1 | |
| install_support_libraries "ON" "RelWithDebInfo" | |
| install_galprop "ON" "RelWithDebInfo" | |
| exit | |
| ;; | |
| d) | |
| echo -e "${TC}------ Recompile GALPROP in debug mode ------${NC}" | |
| cd ${INSTALL_DIRECTORY} | |
| delete_build >${LOG_DIRECTORY}/delete-build-log 2>&1 | |
| install_support_libraries "ON" "Debug" | |
| install_galprop "ON" "Debug" | |
| exit | |
| ;; | |
| u) | |
| echo -e "${TC}------ Update GALPROP executable ------${NC}" | |
| cd ${INSTALL_DIRECTORY} | |
| install_galprop "ON" "RelWithDebInfo" | |
| exit | |
| ;; | |
| \?) | |
| usage | |
| ;; | |
| esac | |
| done | |
| ## Installation | |
| echo -e "${TC}------ Installation of GALPROP cosmic ray propagation code ------${NC}" | |
| cd ${INSTALL_DIRECTORY} | |
| chmod +x *.sh | |
| ## Test for existing installation | |
| if [ -e "${INSTALL_DIRECTORY}/GALPROP-57.0.3032/bin/galprop" ]; then | |
| echo -e "GALPROP executable found (use -o or -u to recompile) [${GREEN}done${NC}]" | |
| else | |
| install_support_libraries "ON" "RelWithDebInfo" | |
| install_galprop "ON" "RelWithDebInfo" | |
| echo -e "${TC}-> Installation of GALPROP cosmic ray propagation code ${NC}[${GREEN}done${NC}]" | |
| echo -e "${TC} Source ~/${MY_RC_FILE} to set libraries for current shell to run GALPROP${NC}" | |
| fi |
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