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Ulugbek Baymuradov Bek

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Bek / CpG_Methylation_Sanity_Check.ipynb
Last active March 20, 2019 09:09
This code looks at methylation region in base pair resolution and gets ratio of signal values in C to G nucleotides in ENCODE whole genome bisulfite sequencing experiment ENCSR481JIW
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Bek / multi-task.ipynb
Created November 25, 2018 09:32
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Bek / cnn-with-positive-and-negative-direction-reads.ipynb
Created November 16, 2018 06:57
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Bek / bigwig_processing.ipynb
Last active November 15, 2018 01:47
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Bek / mapping_test.sh
Last active April 5, 2016 19:19
Elasticsearch not_analyzed still gets analyzed when included in _all
curl -XDELETE 'http://localhost:9200/test'
echo
curl -XPUT 'http://localhost:9200/test'
echo
echo
curl -XPUT 'http://localhost:9200/test/_mapping/message' -d '
{
"message" : {
"properties" : {
"message" : {"type" : "string", "store" : "true" },
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Bek / gist:2342056
Created April 9, 2012 07:01 — forked from shazron/gist:1725083
PhoneGap/Cordova: Open a url in the same UIWebView programmatically
function openInWebView(url)
{
var anchor = document.createElement('a');
anchor.setAttribute('href', url);
//anchor.setAttribute('target', '_self');
var dispatch = document.createEvent('HTMLEvents')
dispatch.initEvent('click', true, true);
anchor.dispatchEvent(dispatch);
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Bek / gist:1657212
Created January 22, 2012 14:22
Exception in SMS Gateway: incompatible character encodings: ASCII-8BIT and US-ASCII at /Users/Bek/ruby-smpp/lib/smpp/pdu/base.rb:91:in `initialize'
/Users/Bek/ruby-smpp/lib/smpp/pdu/submit_sm.rb:49:in `initialize'
/Users/Bek/ruby-smpp/lib/smpp/transceiver.rb:21:in `new'
/Users/Bek/ruby-smpp/lib/smpp/transceiver.rb:21:in `send_mt'
sample_gateway.rb:46:in `send_mt'
sample_gateway.rb:27:in `receive_line'
/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/em/protocols/linetext2.rb:64:in `receive_data'
/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/eventmachine.rb:256:in `run_machine'
/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/eventmachine.rb:256:in `run'
sample_gateway.rb:61:in `block in start'
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Bek / gist:1657211
Created January 22, 2012 14:22
Exception in SMS Gateway: incompatible character encodings: ASCII-8BIT and US-ASCII at /Users/Bek/ruby-smpp/lib/smpp/pdu/base.rb:91:in `initialize'
/Users/Bek/ruby-smpp/lib/smpp/pdu/submit_sm.rb:49:in `initialize'
/Users/Bek/ruby-smpp/lib/smpp/transceiver.rb:21:in `new'
/Users/Bek/ruby-smpp/lib/smpp/transceiver.rb:21:in `send_mt'
sample_gateway.rb:46:in `send_mt'
sample_gateway.rb:27:in `receive_line'
/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/em/protocols/linetext2.rb:64:in `receive_data'
/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/eventmachine.rb:256:in `run_machine'
/Users/Bek/.rvm/gems/ruby-1.9.2-p0/gems/eventmachine-0.12.10/lib/eventmachine.rb:256:in `run'
sample_gateway.rb:61:in `block in start'
@Bek
Bek / gist:1540029
Created December 30, 2011 14:11 — forked from raykrueger/gist:1534951
require 'logger'
require 'openssl'
class UcellGateway
#dunno what this is, but it's yours :)
include MessageFilter
def initialize
@logger = Logger.new
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Bek / gist:1530609
Created December 29, 2011 00:11
module MessageSender
def self.redis
@redis ||= EM::Hiredis.connect
end
def self.next
if UcellGateway.connection_exists == true
redis.blpop("ucell-out", 0) do |item| #blpop on redis return an array with key(ucell-out) and value
if item[1]