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BenTenmann/setriq_example_1.py

Created December 21, 2022 12:10
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setriq_example_1.py
import pandas as pd
import setriq
df = pd.read_csv("vdjdb.csv", names=["cdr3", "epitope", "gene", "species"])
lev = setriq.Levenshtein(return_squareform=True)
# limit to 1000 to avoid explosion in time-taken
D = lev(df["cdr3"].iloc[:1000])
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