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May 18, 2022 13:19
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| patient | gender | status | sample | lane | fastq_1 | fastq_2 | |
|---|---|---|---|---|---|---|---|
| S000 | XX | 0 | S000-1234N | S000-1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S001 | XX | 0 | S001-1234N | S001-1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S002 | XX | 0 | S002-1234N | S002-1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S003 | XX | 0 | S003-1234N | S003-1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S004 | XX | 0 | S004-1234N | S004-1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S005 | XX | 0 | S005-1234N | S005-1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S006 | XX | 1 | S006-9876T | S006-9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S007 | XX | 1 | S007-9876T | S007-9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S008 | XX | 1 | S008-9876T | S008-9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S009 | XX | 1 | S009-9876T | S009-9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S010 | XX | 0 | S010-1234N | S010-1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S011 | XX | 0 | S011-1234N | S011-1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S012 | XX | 0 | S012-1234N | S012-1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S013 | XX | 0 | S013-1234N | S013-1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S014 | XX | 0 | S014-1234N | S014-1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S015 | XX | 0 | S015-1234N | S015-1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S016 | XX | 1 | S016-9876T | S016-9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S017 | XX | 1 | S017-9876T | S017-9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S018 | XX | 1 | S018-9876T | S018-9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S019 | XX | 1 | S019-9876T | S019-9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S020 | XX | 0 | S020-1234N | S020-1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S021 | XX | 0 | S021-1234N | S021-1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S022 | XX | 0 | S022-1234N | S022-1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S023 | XX | 0 | S023-1234N | S023-1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S024 | XX | 0 | S024-1234N | S024-1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S025 | XX | 0 | S025-1234N | S025-1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S026 | XX | 1 | S026-9876T | S026-9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S027 | XX | 1 | S027-9876T | S027-9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S028 | XX | 1 | S028-9876T | S028-9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S029 | XX | 1 | S029-9876T | S029-9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S030 | XX | 0 | S030-1234N | S030-1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S031 | XX | 0 | S031-1234N | S031-1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S032 | XX | 0 | S032-1234N | S032-1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S033 | XX | 0 | S033-1234N | S033-1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S034 | XX | 0 | S034-1234N | S034-1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S035 | XX | 0 | S035-1234N | S035-1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S036 | XX | 1 | S036-9876T | S036-9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S037 | XX | 1 | S037-9876T | S037-9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S038 | XX | 1 | S038-9876T | S038-9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S039 | XX | 1 | S039-9876T | S039-9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S040 | XX | 0 | S040-1234N | S040-1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S041 | XX | 0 | S041-1234N | S041-1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S042 | XX | 0 | S042-1234N | S042-1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S043 | XX | 0 | S043-1234N | S043-1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S044 | XX | 0 | S044-1234N | S044-1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S045 | XX | 0 | S045-1234N | S045-1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S046 | XX | 1 | S046-9876T | S046-9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S047 | XX | 1 | S047-9876T | S047-9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S048 | XX | 1 | S048-9876T | S048-9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S049 | XX | 1 | S049-9876T | S049-9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S050 | XX | 0 | S050-1234N | S050-1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S051 | XX | 0 | S051-1234N | S051-1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S052 | XX | 0 | S052-1234N | S052-1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S053 | XX | 0 | S053-1234N | S053-1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S054 | XX | 0 | S054-1234N | S054-1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S055 | XX | 0 | S055-1234N | S055-1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S056 | XX | 1 | S056-9876T | S056-9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S057 | XX | 1 | S057-9876T | S057-9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S058 | XX | 1 | S058-9876T | S058-9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S059 | XX | 1 | S059-9876T | S059-9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S060 | XX | 0 | S060-1234N | S060-1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S061 | XX | 0 | S061-1234N | S061-1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S062 | XX | 0 | S062-1234N | S062-1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S063 | XX | 0 | S063-1234N | S063-1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S064 | XX | 0 | S064-1234N | S064-1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S065 | XX | 0 | S065-1234N | S065-1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S066 | XX | 1 | S066-9876T | S066-9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S067 | XX | 1 | S067-9876T | S067-9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S068 | XX | 1 | S068-9876T | S068-9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S069 | XX | 1 | S069-9876T | S069-9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S070 | XX | 0 | S070-1234N | S070-1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S071 | XX | 0 | S071-1234N | S071-1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S072 | XX | 0 | S072-1234N | S072-1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S073 | XX | 0 | S073-1234N | S073-1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S074 | XX | 0 | S074-1234N | S074-1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S075 | XX | 0 | S075-1234N | S075-1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S076 | XX | 1 | S076-9876T | S076-9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S077 | XX | 1 | S077-9876T | S077-9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S078 | XX | 1 | S078-9876T | S078-9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S079 | XX | 1 | S079-9876T | S079-9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S080 | XX | 0 | S080-1234N | S080-1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S081 | XX | 0 | S081-1234N | S081-1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S082 | XX | 0 | S082-1234N | S082-1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S083 | XX | 0 | S083-1234N | S083-1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S084 | XX | 0 | S084-1234N | S084-1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S085 | XX | 0 | S085-1234N | S085-1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S086 | XX | 1 | S086-9876T | S086-9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S087 | XX | 1 | S087-9876T | S087-9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S088 | XX | 1 | S088-9876T | S088-9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S089 | XX | 1 | S089-9876T | S089-9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz | |
| S090 | XX | 0 | S090-1234N | S090-1234N_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S091 | XX | 0 | S091-1234N | S091-1234N_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S092 | XX | 0 | S092-1234N | S092-1234N_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S093 | XX | 0 | S093-1234N | S093-1234N_M5 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S094 | XX | 0 | S094-1234N | S094-1234N_M6 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S095 | XX | 0 | S095-1234N | S095-1234N_M7 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/D0F23_N_111212.3.AGTTGCTT_R2_xxx.fastq.gz | |
| S096 | XX | 1 | S096-9876T | S096-9876T_M1 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.3.ACCAACTG_R2_xxx.fastq.gz | |
| S097 | XX | 1 | S097-9876T | S097-9876T_M2 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.5.ACCAACTG_R2_xxx.fastq.gz | |
| S098 | XX | 1 | S098-9876T | S098-9876T_M3 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.6.ACCAACTG_R2_xxx.fastq.gz | |
| S099 | XX | 1 | S099-9876T | S099-9876T_M4 | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R1_xxx.fastq.gz | https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/tumor/C09D_T_111207.7.ACCAACTG_R2_xxx.fastq.gz |
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