CH4RLY150
CH4RLY150
/ FillHolesInSegments.py
Created
October 11, 2025 16:07
— forked from lassoan/FillHolesInSegments.py
Fills all internal holes inside segments. For example, fills in empty regions inside vertebral bodies segmented with Grow from seeds with intensity-based masking.
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| segmentationNode = slicer.mrmlScene.GetFirstNodeByClass('vtkMRMLSegmentationNode') | |
| # set value to the size of the larges cracks in the segment surfaces | |
| maximumHoleSizeMm = 2.0 | |
| ############ | |
| masterVolumeNode = segmentationNode.GetNodeReference(segmentationNode.GetReferenceImageGeometryReferenceRole()) | |
| # Create segment editor to get access to effects | |
| segmentEditorWidget = slicer.qMRMLSegmentEditorWidget() | |
| # To show segment editor widget (useful for debugging): |