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#!/bin/sh | |
# note this shell is dependent on data structure in directories | |
# you can change it to accomidate the way you have things in folders, | |
# or you can adjust your data to the following: | |
# parent directory: containing the phase_impute.py file | |
# a 'cluster_assignments' directory, housing the cluster files split by linkage group | |
# a 'phase_data' directory with all the phase files in .csv fmt | |
# an empty 'imputed_phase_data' directory that the program will write files to. | |
# note if you pass a filename in to '-p file.txt' flag it will write an |
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