Redirect permanently all domains to one (HTTPS) - Apache config

.htaccess

RewriteCond %{HTTP_HOST} !^www\.company\.com$ [NC]  # nocase
RewriteRule (.*) https://www.company.com/$1 [NE,R=301,L]  # noescape, redirect, last

000-default.conf

<VirtualHost *:443>
	SSLEngine on
	SSLCertificateFile /etc/apache2/ssl/wildcard-company-com.cer
	SSLCertificateKeyFile /etc/apache2/ssl/myserver.key
	SSLCACertificateFile /etc/apache2/ssl/CA.cer

	RewriteEngine On
	RewriteCond %{HTTP_HOST} !^company\.com [NC]  # nocase
	RewriteRule ^/(.*)$ https://company.com/$1 [NE,R=301,L]  # noescape, redirect, last: http://httpd.apache.org/docs/2.4/rewrite/flags.html
</VirtualHost>

.htaccess worked better for non subdomains.