Script to run on AWS startup

setup_and_run.sh

#!/bin/bash

PREFIX=/root/miniconda

wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p ${PREFIX}

CONDA=${PREFIX}/bin/conda
${CONDA} create -y -n mp -c chogan/label/dev -c chogan -c conda-forge pymeep boto3

BASE_FILENAME=$(date +%s.%N)
export LOGFILE=${BASE_FILENAME}.log
export PYSCRIPT=run_random_sim.py

PYTHON=${PREFIX}/envs/mp/bin/python
${PYTHON} -c "import boto3; import os; s3 = boto3.resource('s3'); s3.Bucket('hogan-fragment-stats').download_file(os.environ['PYSCRIPT'], os.environ['PYSCRIPT'])"

${PYTHON} ${PYSCRIPT} -f ${BASE_FILENAME}.csv > ${LOGFILE} 2>&1

${PYTHON} -c "import boto3; import os; s3 = boto3.client('s3'); s3.upload_file(os.environ['LOGFILE'], 'hogan-fragment-stats', 'logs/' + os.environ['LOGFILE']);"

shutdown -h now