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generating a file containing Bioimages and Morphbank identifiers
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xquery version "3.0"; | |
(: let $localFilesFolderUnix := "c:/test" :) | |
let $localFilesFolderPC := "c:\test" | |
let $uri := "http://services.morphbank.net/mbsvc3/request?method=changes&objecttype=Image&keywords=&geolocated=true&firstResult=0&user=&group=Bioimages&change=&lastDateChanged=&numChangeDays=30&id=&taxonName=&format=svc" | |
let $responseDoc := fn:doc($uri) | |
let $ids := | |
for $id in $responseDoc//object/sourceId | |
return concat($id/external/text(),"|","http://www.morphbank.net/?id=",$id/morphbank/text(),"&imgType=jpeg") | |
return file:write(concat($localFilesFolderPC,"\morphbank-ids.csv"), $ids, map { "item-separator": " "}) | |
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xquery version "3.0"; | |
(: let $localFilesFolderUnix := "c:/test" :) | |
let $localFilesFolderPC := "c:\test" | |
let $uri := "http://services.morphbank.net/mbsvc3/request?method=changes&objecttype=Image&keywords=&geolocated=true&firstResult=0&user=&group=Bioimages&change=&lastDateChanged=&numChangeDays=30&id=&taxonName=&format=svc" | |
let $responseDoc := fn:doc($uri) | |
(:let $responseDoc := fn:doc(concat('file:///',$localFilesFolderUnix,'/morphbank-image-response-2015-11-29.xml')) :) | |
let $nl := " " (: newline character :) | |
(: | |
*********** Main query ********* | |
:) | |
return ( | |
file:write(concat($localFilesFolderPC,"\morphbank-ids.csv"), | |
for $id in $responseDoc//object/sourceId | |
return | |
concat($id/external/text(),"|","http://www.morphbank.net/?id=",$id/morphbank/text(),"&imgType=jpeg",$nl) | |
) | |
) |
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