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Dimuthu Wannipurage DImuthuUpe

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"g++" -fvisibility-inlines-hidden -m64 -pthread -O3 -finline-functions -Wno-inline -Wall -pedantic -g -fvisibility=hidden -DBOOST_ALL_NO_LIB=1 -DNDEBUG -I"." -c -o "bin.v2/libs/stacktrace/build/gcc-9.3.0/release/debug-symbols-on/link-static/threading-multi/visibility-hidden/noop.o" "libs/stacktrace/build/../src/noop.cpp"
RmTemps bin.v2/libs/stacktrace/build/gcc-9.3.0/release/debug-symbols-on/link-static/threading-multi/visibility-hidden/libboost_stacktrace_noop.a(clean)
rm -f "bin.v2/libs/stacktrace/build/gcc-9.3.0/release/debug-symbols-on/link-static/threading-multi/visibility-hidden/libboost_stacktrace_noop.a" 2>/dev/null >/dev/null
gcc.archive bin.v2/libs/stacktrace/build/gcc-9.3.0/release/debug-symbols-on/link-static/threading-multi/visibility-hidden/libboost_stacktrace_noop.a
"ar" rc "bin.v2/libs/stacktrace/build/gcc-9.3.0/release/debug-symbols-on/link-static/threading-multi/visibility-hidden/libboost_stacktrace_noop.a" "bin.v2/libs/stacktrace/build/gcc-9.3.0/release/debug-symbols-on
from twister2.TSetContext import TSetContext
from twister2.Twister2Environment import Twister2Environment
from twister2.tset.fn.SourceFunc import SourceFunc
import requests
import scipy.io as sio
import numpy as np
import tensorflow as tf
from tensorflow import keras
import threading
import queue
[2020-06-18 22:54:49 -0400] [INFO] [-] [main] edu.iu.dsc.tws.rsched.core.ResourceAllocator: No need to copy the systems package
[2020-06-18 22:54:49 -0400] [INFO] [-] [main] edu.iu.dsc.tws.rsched.core.ResourceAllocator: Archive file created: /var/folders/jv/720v_l5x5072fjljf9fm3_mm0000gn/T/twister2-python-job-c2756662-5021-4fa2-9347-803139abb54e-1220345567038075689/twister2-job.tar.gz
[2020-06-18 22:54:49 -0400] [INFO] [-] [main] edu.iu.dsc.tws.rsched.core.ResourceAllocator: Job package upload started. It took: 8ms
[2020-06-18 22:54:49 -0400] [INFO] [-] [main] edu.iu.dsc.tws.rsched.schedulers.standalone.MPILauncher: Launching job for cluster standalone
[2020-06-18 22:54:50 -0400] [INFO] [-] [main] edu.iu.dsc.tws.rsched.schedulers.standalone.MPILauncher: Configured as SHARED file system. Skipping bootstrap procedure & setting up working directory
[2020-06-18 22:54:50 -0400] [INFO] [-] [main] edu.iu.dsc.tws.rsched.utils.ResourceSchedulerUtils: Downloading package /Users/dimuthu/.twister2/repository/dimuthu-pyth
Collecting zipp>=0.5
Using cached zipp-3.1.0-py3-none-any.whl (4.9 kB)
Installing collected packages: django-treebeard, django-modelcluster, soupsieve, beautifulsoup4, Pillow, wagtail, wagtailfontawesome, appnope, wcwidth, prompt-toolkit, backcall, pickleshare, ptyprocess, pexpect, parso, jedi, ipython-genutils, decorator, traitlets, pygments, ipython, pyzmq, jupyter-core, tornado, python-dateutil, jupyter-client, ipykernel, jupyter-console, pyrsistent, zipp, importlib-metadata, attrs, jsonschema, nbformat, Send2Trash, MarkupSafe, jinja2, terminado, pandocfilters, testpath, entrypoints, mistune, bleach, defusedxml, nbconvert, prometheus-client, notebook, widgetsnbextension, ipywidgets, qtpy, qtconsole, jupyter, tenacity, tqdm, pyyaml, future, click, textwrap3, ansiwrap, papermill, airavata-django-portal
Running setup.py install for django-treebeard ... done
Attempting uninstall: Pillow
Found existing installation: Pillow 7.1.1
Uninstalling Pillow-7.1.1:
Successfully uninstalled Pillow-7.
(venv) Dimuthus-MacBook-Pro:airavata-django-portal dimuthu$ python manage.py load_default_gateway
[2020-04-09 20:15:49,627 django_airavata.apps.api.urls:108 DEBUG] router url: <RegexURLPattern project-list ^projects/$>
[2020-04-09 20:15:49,628 django_airavata.apps.api.urls:108 DEBUG] router url: <RegexURLPattern project-list ^projects\.(?P<format>[a-z0-9]+)/?$>
[2020-04-09 20:15:49,628 django_airavata.apps.api.urls:108 DEBUG] router url: <RegexURLPattern project-list-all ^projects/list_all/$>
[2020-04-09 20:15:49,629 django_airavata.apps.api.urls:108 DEBUG] router url: <RegexURLPattern project-list-all ^projects/list_all\.(?P<format>[a-z0-9]+)/?$>
[2020-04-09 20:15:49,629 django_airavata.apps.api.urls:108 DEBUG] router url: <RegexURLPattern project-detail ^projects/(?P<project_id>[^/]+)/$>
[2020-04-09 20:15:49,629 django_airavata.apps.api.urls:108 DEBUG] router url: <RegexURLPattern project-detail ^projects/(?P<project_id>[^/]+)\.(?P<format>[a-z0-9]+)/?$>
[2020-04-09 20:15:49,629 django_airavata.apps.api.urls
2020-01-30 13:52:53,974 [pool-9-thread-198449] ERROR o.a.a.r.c.r.AbstractRepository - Failed to execute transaction
org.apache.openjpa.persistence.RollbackException: The transaction has been rolled back. See the nested exceptions for details on the errors that occurred.
at org.apache.openjpa.persistence.EntityManagerImpl.commit(EntityManagerImpl.java:595)
at org.apache.airavata.registry.core.repositories.AbstractRepository.execute(AbstractRepository.java:119)
at org.apache.airavata.registry.core.repositories.expcatalog.ProcessRepository.saveProcess(ProcessRepository.java:83)
at org.apache.airavata.registry.core.repositories.expcatalog.ProcessRepository.saveProcessModelData(ProcessRepository.java:51)
at org.apache.airavata.registry.core.repositories.expcatalog.ProcessRepository.updateProcess(ProcessRepository.java:132)
at org.apache.airavata.registry.api.service.handler.RegistryServerHandler.updateProcess(RegistryServerHandler.java:934)
at org.apache.ai
[2020-01-13 02:21:46 -0500] [INFO] [worker-1] [python-process] edu.iu.dsc.tws.python.PythonWorker: Hello from worker 1
[2020-01-13 02:21:46 -0500] [INFO] [worker-0] [python-process] edu.iu.dsc.tws.python.PythonWorker: Hello from worker 0
[2020-01-13 02:21:46 -0500] [INFO] [worker-1] [python-process] edu.iu.dsc.tws.python.PythonWorker: Traceback (most recent call last):
[2020-01-13 02:21:46 -0500] [INFO] [worker-0] [python-process] edu.iu.dsc.tws.python.PythonWorker: Traceback (most recent call last):
[2020-01-13 02:21:46 -0500] [INFO] [worker-1] [python-process] edu.iu.dsc.tws.python.PythonWorker: File "/Users/dimuthu/.twister2/jobs/dimuthu-python-job-9564bfcc-ff58-408d--ezb7p8c/tset_source_example.py", line 26, in <module>
[2020-01-13 02:21:46 -0500] [INFO] [worker-0] [python-process] edu.iu.dsc.tws.python.PythonWorker: File "/Users/dimuthu/.twister2/jobs/dimuthu-python-job-9564bfcc-ff58-408d--ezb7p8c/tset_source_example.py", line 26, in <module>
[2020-01-13 02:21:46 -0500] [INFO] [worker-1] [python-proc
instanceName:helixparticipant
helixmanager:org.apache.helix.manager.zk.ZKHelixManager@52d79ef2
INTERMEDIATE_STATE:{Workflow_of_process_PROCESS_a69c815a-ce15-456b-92ec-ec24d673b16b-PRE-9218d970-90b2-4770-848d-b5235fe7b6f8_TASK_e9d313c1-8677-4399-b8bc-24d9444071f3={}, Workflow_of_process_PROCESS_a69c815a-ce15-456b-92ec-ec24d673b16b-PRE-9218d970-90b2-4770-848d-b5235fe7b6f8={}}
MESSAGES_SELECTED:{Workflow_of_process_PROCESS_a69c815a-ce15-456b-92ec-ec24d673b16b-PRE-9218d970-90b2-4770-848d-b5235fe7b6f8_TASK_e9d313c1-8677-4399-b8bc-24d9444071f3={Workflow_of_process_PROCESS_a69c815a-ce15-456b-92ec-ec24d673b16b-PRE-9218d970-90b2-4770-848d-b5235fe7b6f8_TASK_e9d313c1-8677-4399-b8bc-24d9444071f3_0=[]}, Workflow_of_process_PROCESS_a69c815a-ce15-456b-92ec-ec24d673b16b-PRE-9218d970-90b2-4770-848d-b5235fe7b6f8={Workflow_of_process_PROCESS_a69c815a-ce15-456b-92ec-ec24d673b16b-PRE-9218d970-90b2-4770-848d-b5235fe7b6f8=[]}}
AsyncFIFOWorkerPool:{TargetExternalViewCalcWorker=Thread[TargetExternalViewCalcWorker-AiravataDemoCluster
Mar 27 19:14:54 pga-scigap-develop.novalocal webhook[15564]: [webhook] 2019/03/27 19:14:54 [4428b7] incoming HTTP request from 192.30.252.39:36658
Mar 27 19:14:54 pga-scigap-develop.novalocal webhook[15564]: [webhook] 2019/03/27 19:14:54 [4428b7] simccs-maptool-update got matched
Mar 27 19:14:54 pga-scigap-develop.novalocal webhook[15564]: [webhook] 2019/03/27 19:14:54 [4428b7] simccs-maptool-update hook triggered successfully
Mar 27 19:14:54 pga-scigap-develop.novalocal webhook[15564]: [webhook] 2019/03/27 19:14:54 200 | 1.364019ms | pgadev.scigap.org:13000 | POST /hooks/simccs-maptool-update
Mar 27 19:14:54 pga-scigap-develop.novalocal webhook[15564]: [webhook] 2019/03/27 19:14:54 [4428b7] executing /home/pga/webhooks/commands/simccs-maptool-update (/home/pga/webhooks/commands/simccs-maptool-update) with arguments ["/home/pga/webhooks/commands/simccs-maptool-update" "simccs-maptool"] and environment [] using as cwd
Mar 27 19:14:57 pga-scigap-develop.novalocal webhook[15564]: [webhook] 2019/03/27 19:14:57
2018-11-10 18:29:28,003 [pool-10-thread-208241] ERROR o.a.a.r.c.a.c.i.ApplicationDeploymentImpl - Error while retrieving application deployment...
org.apache.airavata.registry.cpi.AppCatalogException: <openjpa-2.2.0-r422266:1244990 fatal user error> org.apache.openjpa.persistence.InvalidStateException: The context has been closed. The stack trace at which the context was closed is available if Runtime=TRACE logging is enabled.
at org.apache.airavata.registry.core.app.catalog.resources.LibraryApendPathResource.get(LibraryApendPathResource.java:214)
at org.apache.airavata.registry.core.app.catalog.util.AppCatalogThriftConversion.getApplicationDeploymentDescription(AppCatalogThriftConversion.java:758)
at org.apache.airavata.registry.core.app.catalog.impl.ApplicationDeploymentImpl.getApplicationDeployement(ApplicationDeploymentImpl.java:326)
at org.apache.airavata.registry.api.service.handler.RegistryServerHandler.getApplicationDeployment(RegistryServerHandler.java:1211)