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DSLituiev/sranj

Created May 10, 2016 06:18
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sranj
<Test-sra>
<Ngs>
<Latest>
<ncbi-vdb version=""/>
<ngs-sdk version=""/>
</Latest>
<LibManager.properties/>
<ncbi-vdb>
</ncbi-vdb>
<ngs-sdk>
</ngs-sdk>
</Ngs>
<Version>
NCBI SRA Toolkit release version: 2.5.7.<br/>
ERROR: cannot get latest available SRA Toolkit release version. </Version>
<Os>Linux iq218 2.6.32-573.22.1.el6.x86_64 #1 SMP Wed Mar 23 03:35:39 UTC 2016 x86_64</Os>
<Ascp>
ascp_locate = RC(rcNS,rcFile,rcCopying,rcFile,rcNotFound)
<MaxRate>1000m</MaxRate>
<Disabled>false</Disabled>
</Ascp>
<Object>
SRR390728 NotFound - NotFound <br/>
<Resolve>
<Query name="SRR390728">
Local: not found<br/>
Remote HttpFasp: not found<br/>
Cache HttpFasp: skipped<br/>
Remote FaspHttp: not found<br/>
Cache FaspHttp: skipped<br/>
VResolverQuery(SRR390728, Http, local, remote, cache)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/>
<Timer>
VResolverQuery(SRR390728, Http, local, remote=NULL, cache=NULL)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/>
VResolverQuery(SRR390728, Http, local=NULL, remote, cache)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/>
<Time time="1 ms"/>
</Timer>
VResolverQuery(SRR390728, FaspHttp, local, remote, cache)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/>
<Timer>
VResolverQuery(SRR390728, FaspHttp, local, remote=NULL, cache=NULL)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/>
VResolverQuery(SRR390728, FaspHttp, local=NULL, remote, cache)= RC(rcVFS,rcTree,rcResolving,rcPath,rcNotFound)<br/>
<Time time="1 ms"/>
</Timer>
</Query>
</Resolve>
<Network>
<HttpProxy enabled="false">
<Path>(null)</Path>
</HttpProxy>
<UserAgent>linux64 sra-toolkit test-sra.2.5.7</UserAgent>
KNSManagerInitDNSEndpoint(www.ncbi.nlm.nih.gov, 80)=RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcBusy)<br/>
<Cgi>
KNSManagerMakeReliableClientRequest(http://www.ncbi.nlm.nih.gov/Traces/names/names.cgi)=RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcBusy)<br/>
</Cgi>
</Network>
<Dependencies>
<Dependencies>
</Object>
<Report>
<Run>
<Date>
<Start value="Mon May 9 2016 11:17:16 PM"/>
<End value="Mon May 9 2016 11:17:16 PM"/>
</Date>
<Home name="HOME" value="/netapp/home/dlituiev"/>
<Cwd>/netapp/home/dlituiev</Cwd>
<CommandLine argc="2">
<Arg index="0" value="test-sra"/>
<Arg index="1" value="SRR390728"/>
</CommandLine>
<Result rc="RC(rcNoErr)"/>
<User admin="false"/>
</Run>
<Configuration>
<Files count="3">
<File name="/netapp/home/dlituiev/.ncbi/user-settings.mkfg"/>
<File name="/ye/netapp/jimmie.ye/tools/sratoolkit.2.5.7-centos_linux64/bin/ncbi/default.kfg"/>
<File name="/ye/netapp/jimmie.ye/tools/sratoolkit.2.5.7-centos_linux64/bin/ncbi/vdb-copy.kfg"/>
</Files>
<refseq state="not found"/>
<krypto file="not found">/netapp/home/dlituiev/.ncbi/vdb-passwd</krypto>
<sra state="not found"/>
<Config>
<APPNAME>"test-sra"</APPNAME>
<APPPATH>"/netapp/home/dlituiev/"</APPPATH>
<AWS></AWS>
<BUILD>"RELEASE"</BUILD>
<HOME>"/netapp/home/dlituiev"</HOME>
<HOST></HOST>
<NCBI_HOME>"/netapp/home/dlituiev/.ncbi"</NCBI_HOME>
<NCBI_SETTINGS>"/netapp/home/dlituiev/.ncbi/user-settings.mkfg"</NCBI_SETTINGS>
<OS>"linux"</OS>
<PWD>"/netapp/home/dlituiev"</PWD>
<USER>"dlituiev"</USER>
<VDBCOPY><!-- skipped --></VDBCOPY>
<VDB_CONFIG></VDB_CONFIG>
<VDB_ROOT></VDB_ROOT>
<config>
<default>"false"</default>
</config>
<http>
<proxy>
<enabled>"true"</enabled>
<path>"http://172.19.0.250:80/"</path>
</proxy>
</http>
<kfg>
<arch>
<bits>"64"</bits>
<name>"iq218"</name>
</arch>
<dir>"/netapp/home/dlituiev/.ncbi"</dir>
<name>"user-settings.mkfg"</name>
</kfg>
<krypto>
<pwfile>"/netapp/home/dlituiev/.ncbi/vdb-passwd"</pwfile>
</krypto>
<repository>
<remote>
<aux>
<NCBI>
<apps>
<nakmer>
<volumes>
<fuseNAKMER>"sadb"</fuseNAKMER>
</volumes>
</nakmer>
<nannot>
<volumes>
<fuseNANNOT>"sadb"</fuseNANNOT>
</volumes>
</nannot>
<refseq>
<volumes>
<refseq>"refseq"</refseq>
</volumes>
</refseq>
<sra>
<volumes>
<fuse1000>"sra-instant/reads/ByRun/sra"</fuse1000>
</volumes>
</sra>
<wgs>
<volumes>
<fuseWGS>"wgs"</fuseWGS>
</volumes>
</wgs>
</apps>
<root>"http://ftp-trace.ncbi.nlm.nih.gov/sra"</root>
</NCBI>
</aux>
<disabled>"false"</disabled>
<main>
<CGI>
<resolver-cgi>"http://www.ncbi.nlm.nih.gov/Traces/names/names.cgi"</resolver-cgi>
</CGI>
</main>
<protected>
<CGI>
<resolver-cgi>"http://www.ncbi.nlm.nih.gov/Traces/names/names.cgi"</resolver-cgi>
</CGI>
</protected>
</remote>
<user>
<default-path>"/netapp/home/dlituiev/ncbi"</default-path>
<main>
<public>
<apps>
<file>
<volumes>
<flat>"files"</flat>
</volumes>
</file>
<nakmer>
<volumes>
<nakmerFlat>"nannot"</nakmerFlat>
</volumes>
</nakmer>
<nannot>
<volumes>
<nannotFlat>"nannot"</nannotFlat>
</volumes>
</nannot>
<refseq>
<volumes>
<refseq>"refseq"</refseq>
</volumes>
</refseq>
<sra>
<volumes>
<sraFlat>"sra"</sraFlat>
</volumes>
</sra>
<wgs>
<volumes>
<wgsFlat>"wgs"</wgsFlat>
</volumes>
</wgs>
</apps>
<cache-enabled>"true"</cache-enabled>
<root>"/ye/yelabstore/dnase/primary"</root>
</public>
</main>
</user>
</repository>
<tools>
<ascp>
<max_rate>"1000m"</max_rate>
</ascp>
</tools>
<vdb>
<lib>
<paths>
<kfg>"/ye/netapp/jimmie.ye/tools/sratoolkit.2.5.7-centos_linux64/bin"</kfg>
</paths>
</lib>
</vdb>
</Config>
<RemoteAccess available="true"/>
<CurrentProtectedRepository found="false"/>
</Configuration>
<Object path="SRR390728" type="unknown">
</Object>
<SOFTWARE>
<VDBLibrary vers="2.7.8"/>
<Build static="false">
<Error rc="RC(rcCont,rcNamelist,rcInserting,rcString,rcEmpty)" function="VDBManagerListExternalSchemaModules"/>
</Build>
<Tool date="Dec 18 2015" name="test-sra" vers="2.5.7">
<Binary path="/ye/netapp/jimmie.ye/tools/sratoolkit.2.5.7-centos_linux64/bin/test-sra" type="alias" md5="31014d64cb8aad834065d90cbdab803c">
<Alias resolved="test-sra.2">
<Alias resolved="test-sra.2.5.7"/>
</Alias>
</Binary>
</Tool>
</SOFTWARE>
<Env>
</Env>
</Report>
</Test-sra>
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