DailyDreaming

# Copyright 2006-2022 Mark Diekhans
# Modified by Lon Blauvelt 2023
"""Operations for accessing mysql"""
import warnings
import time
import MySQLdb   # mysqlclient is required for python 3
from MySQLdb.cursors import DictCursor  # noqa: F401
from MySQLdb.cursors import Cursor
import MySQLdb.converters

DailyDreaming

import PicSureClient, PicSureHpdsLib


# Based on: https://github.com/hms-dbmi/pic-sure-python-client
#      and: https://terra.biodatacatalyst.nhlbi.nih.gov/#workspaces/biodata-catalyst/BioData%20Catalyst%20PIC-SURE%20API%20Python%20examples/notebooks
#
# +--------------------------------------+------------------------------------------------------+
# |  Resource UUID                       |  Resource Name                                       |
# +--------------------------------------+------------------------------------------------------+
# | 02e23f52-f354-4e8b-992c-d37c8b9ba140 |                                                      |

DailyDreaming

import json
import logging
import os
import requests
import uuid
import sevenbridges as sbg

log = logging.getLogger(__name__)

os.environ['SB_API_ENDPOINT'] = 'https://api.sb.biodatacatalyst.nhlbi.nih.gov/v2'

DailyDreaming

from hca import HCAConfig
from hca.dss import DSSClient

hca_config = HCAConfig()
hca_config['DSSClient'].swagger_url = f'https://dss.dev.data.humancellatlas.org/v1/swagger.json'
dss = DSSClient(config=hca_config)
for i in dss.post_search.iterate(replica='aws', es_query={}):
    uuid, version = i['bundle_fqid'].split('.', 1)
    try:
        s = f'Bundle: {uuid}.{version}\n'

DailyDreaming

#!/usr/bin/env python3
import time
import os
import boto3

from hca import HCAConfig
from hca.dss import DSSClient


"""