Installation of most R packages I use

packages.R

# Bioconductor packages
source("http://bioconductor.org/biocLite.R")
biocLite(ask=FALSE)
biocLite(c("preprocessCore", "biomaRt", "affy", "limma", "beadarray", "ggplot2", "impute", "DESeq2", "Rsamtools", "vsn"))
biocLite(c("topGO", "GO.db", "KEGG.db", "MotifDb", "seqLogo", "motifStack"))
biocLite(c("Biostrings", "GenomicAlignments", "GenomicFeatures", "BiocParallel"))
biocLite(c("BSgenome.Mmusculus.UCSC.mm10", "TxDb.Mmusculus.UCSC.mm10.ensGene"))
biocLite(c("gcrma", "lumi", "ShortRead", "cdfpackage", "seqinr", "reshape2", "plyr", "scales"))

# CRAN packages
install.packages("ape")
install.packages("devtools")
install.packages("extrafont")
install.packages("qtl")
install.packages("qtlDesign")
install.packages("randomForest")
install.packages("rJava")
install.packages("pheno2geno")
install.packages("plotrix")
install.packages("RCurl")
install.packages("WGCNA")
install.packages("snow")
install.packages("nlme")
install.packages("lme4")
install.packages("xlsx")
install.packages("psych")
install.packages("GPArotation")