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March 1, 2023 13:09
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import numpy as np | |
import scipy.optimize as spo | |
import scipy.stats as sps | |
import matplotlib.pyplot as plt | |
x, y = np.array([[3.16275414, 3.79136358], | |
[3.06332232, 3.56686702], | |
[2.71045949, 3.65764056], | |
[3.31620986, 3.9009491 ], | |
[3.0538026 , 3.77374607], | |
[2.65205418, 3.46548462], | |
[3.37982853, 3.87501873], | |
[3.17203268, 3.6633317 ], | |
[3.05775755, 3.75619677], | |
[2.91007762, 3.43503791], | |
[3.11535693, 3.69096722], | |
[3.39581938, 3.74696218], | |
[3.13272406, 3.42290705], | |
[2.78470603, 3.53131451], | |
[3.27740626, 3.84695112], | |
[2.85441284, 3.56755741], | |
[2.78566755, 3.38201978], | |
[3.24804465, 3.70167436], | |
[3.43091588, 3.75821148], | |
[3.54227291, 3.81811405], | |
[3.13807594, 3.67988712], | |
[3.46801239, 3.89121322], | |
[3.34413811, 3.81356879], | |
[2.88571352, 3.389147 ], | |
[3.46944009, 4.04670213], | |
[3.24443329, 3.66727863], | |
[3.19430041, 3.62833333], | |
[3.33884561, 3.69026204], | |
[3.14456693, 3.618733 ], | |
[2.86876214, 3.72446602], | |
[3.10657774, 3.75643054], | |
[3.58450835, 3.85183673], | |
[3.24242311, 3.80806151], | |
[2.69351248, 3.39682342], | |
[3.08693798, 3.69868217], | |
[3.21788634, 3.76964108], | |
[3.83225025, 4.05771948], | |
[3.12537788, 3.82863089], | |
[3.20272503, 3.49631319], | |
[3.06877493, 3.71745014], | |
[2.67606864, 3.61357254], | |
[3.1096587 , 3.62928328], | |
[3.34974315, 3.92875 ], | |
[3.26829268, 3.80015679], | |
[3.38762994, 3.55692308], | |
[3.32415556, 3.77868889], | |
[3.27641221, 3.646743 ], | |
[3.18084615, 3.95869231], | |
[3.42302139, 3.9386631 ], | |
[3.67470085, 4.11934473], | |
[3.31432177, 3.80624606], | |
[3.19971609, 3.59706625], | |
[2.97818182, 3.603367 ], | |
[2.97725424, 3.64698305], | |
[3.47149813, 3.71947566], | |
[2.82501901, 3.4169962 ], | |
[3.17886555, 3.75096639], | |
[2.88793991, 3.57669528], | |
[3.32315789, 3.99167464], | |
[3.36554404, 3.96227979], | |
[2.83045455, 3.48659091], | |
[3.60608187, 3.97976608], | |
[3.00285714, 3.69065476], | |
[3.26709877, 3.86067901], | |
[3.88263514, 4.1775 ], | |
[3.2752381 , 3.9162585 ], | |
[3.40239726, 3.82006849], | |
[3.54143939, 3.98871212], | |
[3.46833333, 3.8315 ], | |
[2.96941667, 3.68858333], | |
[2.86350427, 3.95418803], | |
[3.10672727, 3.65509091], | |
[3.30963636, 3.79818182], | |
[2.79913462, 3.48932692], | |
[3.10911765, 3.92911765]]).T | |
fake_data = False | |
if fake_data: | |
x = np.random.uniform(2.91, 3.2, size=10) | |
y = 2.114798570871842 + x * 0.5088641205763367 | |
x_ = np.arange(0.46, 0.54, 0.001) | |
y_ = np.arange(2, 2.26, 0.001) | |
else: | |
x_ = np.arange(0.46, 0.52, 0.001) | |
y_ = np.arange(2.1, 2.26, 0.001) | |
X, Y = np.meshgrid(x_, y_, sparse=True) | |
def calc_sse(c_s, x, y): | |
errors = y - (c_s[0] + x * c_s[1]) | |
return np.sum(errors ** 2) | |
def loss_2d(slope, intercept, x, y): | |
pred = slope[:, :, None] * x[None, None, :] + intercept[:, :, None] | |
error = pred - y[None, None, :] | |
return np.log(np.sum(error * error, axis=-1)) | |
loss = loss_2d(X, Y, x, y) | |
ls_res = sps.linregress(x, y) | |
print(f'LS inter: {ls_res.intercept}') | |
print(f'LS slope: {ls_res.slope}') | |
ls_sse = calc_sse((ls_res.intercept, ls_res.slope), x, y) | |
print(f'LS SSE error: {ls_sse}') | |
start = [2.25, 0.47] | |
print('\nBGFS minimization:') | |
print(spo.fmin_bfgs(calc_sse, start, args=(x, y))) | |
print('\nPowell minimization:') | |
print(spo.fmin_powell(calc_sse, start, args=(x, y))) | |
traj_powell = np.array(spo.fmin_powell(calc_sse, start, args=(x, y), retall=True)[1]) | |
traj_bfgs = np.array(spo.fmin_bfgs(calc_sse, start, args=(x, y), retall=True)[1]) | |
plt.figure() | |
plt.imshow(loss.T, aspect='auto', interpolation='none', extent=( y_.min(), y_.max(),x_.min(), x_.max(),), origin='lower') | |
plt.plot(*traj_powell.T, label='Powell', marker='+', color='xkcd:gold') | |
plt.plot(*traj_bfgs.T, label='BFGS', marker='+', color='xkcd:bluish') | |
plt.scatter([start[0]], [start[1]], color='xkcd:orange', marker='^', label='Start') | |
plt.scatter( [ls_res.intercept],[ls_res.slope], color='xkcd:leaf green', marker='v', label='Optimum', s=50) | |
plt.xlabel('Intercept') | |
plt.ylabel('Slope') | |
plt.legend() | |
plt.legend() | |
plt.show() |
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