Week13: Progress

bootstrap.min.css

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childMortality_2015.csv

choropleth.js

var width = 800,
    height = 600;

var tip = d3.tip()
  .attr('class', 'd3-tip')
  // .offset([-2, 0])
  .html(function(d) {
    var dataRow = countryById.get(d.id);
    if (dataRow) {
        return "<strong>" + d.properties.name + "</strong>" + ": " + dataRow.mortality;
    } else {
        console.log("no dataRow", d);
        return "<strong>" + d.properties.name + "</strong>" + ": No data.";
    }
  })

var svg = d3.select('#vis').append('svg')
    .attr('width', width)
    .attr('height', height)
    // .call(d3.behavior.zoom()
    // .on("zoom", redraw))
    .append("g")
    .call(tip);



function redraw() {
    svg.attr("transform", "translate(" + d3.event.translate + ")scale(" + d3.event.scale + ")");
}



var projection = d3.geo.mercator()
    .scale(225) // mess with this if you want
    .translate([width / 2, height / 2]);

var path = d3.geo.path()
    .projection(projection);

var colorScale = d3.scale.linear().range(["#d1e5f0","#b2182b"]).interpolate(d3.interpolateLab);
// var colorScale = d3.scale.linear().range(["#fff5f0", "#67000d"]).interpolate(d3.interpolateLab);
// var colorScale = d3.scale.category20();

var countryById = d3.map();

// we use queue because we have 2 data files to load.
queue()
    .defer(d3.json, "countries.json")
    .defer(d3.csv, "childMortality_2015.csv", typeAndSet) // process
    .await(loaded);


function typeAndSet(d) {
    d.mortality = +d.mortality;
    countryById.set(d.ISO3, d);
    return d;
}

function getColor(d) {
    var dataRow = countryById.get(d.id);
    if (dataRow) {
        console.log(dataRow);
        return colorScale(dataRow.mortality);
    } else {
        console.log("no dataRow", d);
        return "rgba(0, 0, 0, 0)";
    }
}

// function getText(d) {
//     var dataRow = countryById.get(d.id);
//     if (dataRow) {
//         return "<strong>" + d.properties.name + "</strong>" + ": " + dataRow.mortality;
//     } else {
//         console.log("no dataRow", d);
//         return "<strong>" + d.properties.name + "</strong>" + ": No data.";
//     }
// }

function loaded(error, countries, mortalityRate) {

    console.log(countries);
    console.log(mortalityRate);
    // console.log(malaria);

    colorScale.domain(d3.extent(mortalityRate, function(d) {return d.mortality;}));
    

    var countries = topojson.feature(countries, countries.objects.units).features;


    // svg.append("rect").attr("width", "100%")
    // .attr("height", "100%")
    // .attr("fill", "rgba(166,206,227,0.2)");

    svg.selectAll('path.countries')
        .data(countries)
        .enter()
        .append('path')
        .attr('class', 'countries')
        .attr('d', path)
        .on('mouseover', tip.show)
        .on('mouseout', tip.hide)
        .attr('fill', function(d,i) {
            console.log(d.properties.name);
            return getColor(d);
        })
        // .call(d3.helper.tooltip(
        //     function(d, i){
        //         return getText(d);
        //     })); 
            //tooltip based in an example from Roger Veciana: http://bl.ocks.org/rveciana/5181105
        // .append("title")
        // .text(function(d) {
        //     return getText(d);
        // });
    

    var linear = colorScale;

    svg.append("g")
      .attr("class", "legendLinear")
      .attr("transform", "translate(200,20)");

    var legendLinear = d3.legend.color()
      .shapeWidth(30)
      .orient('horizontal')
      .scale(linear);

    svg.select(".legendLinear")
      .call(legendLinear);

}

countries.json

d3-legend.min.js

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c=this;a.on("mouseover.legend",function(a){c.d3_cellOver(b,a,this)}).on("mouseout.legend",function(a){c.d3_cellOut(b,a,this)}).on("click.legend",function(a){c.d3_cellClick(b,a,this)})},d3_cellOver:function(a,b,c){a.cellover.call(c,b)},d3_cellOut:function(a,b,c){a.cellout.call(c,b)},d3_cellClick:function(a,b,c){a.cellclick.call(c,b)},d3_title:function(a,b,c,d){if(""!==c){a.append("text").attr("class",d+"legendTitle").text(c);var e=a.select("."+d+"legendTitle").map(function(a){return a[0].getBBox().height})[0],f=-b.map(function(a){return a[0].getBBox().x})[0];b.attr("transform","translate("+f+","+(e+10)+")")}}}},{}],3:[function(a,b,c){var d=a("./legend");b.exports=function(){function a(a){var s=d.d3_calcType(c,q,h,i,l,o),t=a.append("g").attr("class",j+"legendCells"),u=t.selectAll("."+j+"cell").data(s.data),v=u.enter().append("g",".cell").attr("class",j+"cell").style("opacity",1e-6);shapeEnter=v.append(e).attr("class",j+"swatch"),shapes=u.select("g."+j+"cell "+e),d.d3_addEvents(v,r),u.exit().transition().style("opacity",0).remove(),"line"===e?(d.d3_drawShapes(e,shapes,0,f),shapes.attr("stroke-width",s.feature)):d.d3_drawShapes(e,shapes,s.feature,s.feature,s.feature,b),d.d3_addText(t,v,s.labels,j);var w,x,y=u.select("text"),z=shapes[0].map(function(a,b){var d=a.getBBox(),f=c(s.data[b]);return"line"===e&&"horizontal"===p?d.height=d.height+f:"line"===e&&"vertical"===p&&(d.width=d.width),d}),A=d3.max(z,function(a){return a.height+a.y}),B=d3.max(z,function(a){return a.width+a.x}),C="start"==n?0:"middle"==n?.5:1;"vertical"===p?(w=function(a,b){var c=d3.sum(z.slice(0,b+1),function(a){return a.height});return"translate(0, "+(c+b*g)+")"},x=function(a,b){return"translate("+(B+m)+","+(z[b].y+z[b].height/2+5)+")"}):"horizontal"===p&&(w=function(a,b){var c=d3.sum(z.slice(0,b+1),function(a){return a.width});return"translate("+(c+b*g)+",0)"},x=function(a,b){return"translate("+(z[b].width*C+z[b].x)+","+(A+m)+")"}),d.d3_placement(p,u,w,y,x,n),d.d3_title(a,t,k,j),u.transition().style("opacity",1)}var b,c=d3.scale.linear(),e="rect",f=15,g=2,h=[5],i=[],j="",k="",l=d3.format(".01f"),m=10,n="middle",o="to",p="vertical",q=!1,r=d3.dispatch("cellover","cellout","cellclick");return a.scale=function(b){return arguments.length?(c=b,a):a},a.cells=function(b){return arguments.length?((b.length>1||b>=2)&&(h=b),a):a},a.shape=function(c,d){return arguments.length?(("rect"==c||"circle"==c||"line"==c)&&(e=c,b=d),a):a},a.shapeWidth=function(b){return arguments.length?(f=+b,a):a},a.shapePadding=function(b){return arguments.length?(g=+b,a):a},a.labels=function(b){return arguments.length?(i=b,a):a},a.labelAlign=function(b){return arguments.length?(("start"==b||"end"==b||"middle"==b)&&(n=b),a):a},a.labelFormat=function(b){return arguments.length?(l=b,a):a},a.labelOffset=function(b){return 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a.getBBox()}),B=d3.max(A,function(a){return a.height}),C=d3.max(A,function(a){return a.width}),D="start"==n?0:"middle"==n?.5:1;"vertical"===q?(x=function(a,b){return"translate(0, "+b*(B+h)+")"},y=function(a,b){return"translate("+(C+o)+","+(A[b].y+A[b].height/2+5)+")"}):"horizontal"===q&&(x=function(a,b){return"translate("+b*(C+h)+",0)"},y=function(a,b){return"translate("+(A[b].width*D+A[b].x)+","+(B+o)+")"}),d.d3_placement(q,v,x,z,y,n),d.d3_title(a,u,l,k),v.transition().style("opacity",1)}var b=d3.scale.linear(),c="path",e=15,f=15,g=10,h=5,i=[5],j=[],k="",l="",m=d3.format(".01f"),n="middle",o=10,p="to",q="vertical",r=!1,s=d3.dispatch("cellover","cellout","cellclick");return a.scale=function(c){return arguments.length?(b=c,a):a},a.cells=function(b){return arguments.length?((b.length>1||b>=2)&&(i=b),a):a},a.shapePadding=function(b){return arguments.length?(h=+b,a):a},a.labels=function(b){return arguments.length?(j=b,a):a},a.labelAlign=function(b){return arguments.length?(("start"==b||"end"==b||"middle"==b)&&(n=b),a):a},a.labelFormat=function(b){return arguments.length?(m=b,a):a},a.labelOffset=function(b){return arguments.length?(o=+b,a):a},a.labelDelimiter=function(b){return arguments.length?(p=b,a):a},a.orient=function(b){return arguments.length?(b=b.toLowerCase(),("horizontal"==b||"vertical"==b)&&(q=b),a):a},a.ascending=function(b){return arguments.length?(r=!!b,a):a},a.classPrefix=function(b){return arguments.length?(k=b,a):a},a.title=function(b){return arguments.length?(l=b,a):a},d3.rebind(a,s,"on"),a}},{"./legend":2}],5:[function(a,b,c){d3.legend={color:a("./color"),size:a("./size"),symbol:a("./symbol")}},{"./color":1,"./size":3,"./symbol":4}]},{},[5]);

index.html

<!DOCTYPE html>
<!-- Modification of an example by Scott Murray from Knight D3 course -->
<html lang="en">
	<head>
		<meta charset="utf-8">
		<meta http-equiv="X-UA-Compatible" content="IE=edge">
    <meta name="viewport" content="width=device-width, initial-scale=1">
		<title>Child Mortality in SubSaharan Africa</title>
		<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.5/css/bootstrap.min.css">
		<link href="style.css" rel="stylesheet" type="text/css" />
		<link rel="stylesheet" href="stepper.css" />
	<link rel="stylesheet" href="stepper_vis.css" />
		<!-- <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.5/css/bootstrap.min.css" integrity="sha512-dTfge/zgoMYpP7QbHy4gWMEGsbsdZeCXz7irItjcC3sPUFtf0kuFbDz/ixG7ArTxmDjLXDmezHubeNikyKGVyQ==" crossorigin="anonymous"> -->
		<!-- <link rel="stylesheet" href="line.css" /> -->
	</head>
	<body>
		
		<div class="container">
			<h1>Child Mortality in SubSaharan Africa</h1>
			<div class="row">
			<h2>Under-Five Mortality Rates (per 1000 live births) in the World</h2>
		    <p>Compared to the rest of the world, Sub-Saharan Africa has the highest child mortality rates. <span class="red underlineBold">Red</span> represents high child mortality rates and <span class="paleblue underlineBold">pale-blue</span> represents low child mortality rates.</p>
		    <p>Source: <a href="http://data.worldbank.org/indicator/SH.DYN.MORT">WHO</a>. Data shown is most recent data for countries with data available.</p>
		    
		    <div id="vis"></div>
		
			</div>

<div class="row">
  <!-- Step Navigation UI -->
    <div id="vis-nav">
      <a href="#" id="step1" class="step-link active">Step1</a>
      <a href="#" id="step2" class="step-link">Step2</a>
      <a href="#" id="step3" class="step-link">Step3</a>
      <a href="#" id="step4" class="step-link">Step4</a>
      <a href="#" id="step5" class="step-link">Step5</a>
    </div>
  <!-- Container for Visualization -->
    <div id="vis-container">
      <div id="annotation-steps">
        <div class="annotation-step" id="step1-annotation" style="display:block;">
          <div class="annotation" id="step1-left-annotation" >
            <h4>Child Mortality</h4>
            <p>One of the Millenium Development Goals established in 2000 is to reduce child mortality across the world. In September 25, 2015 a set 17 Sustainable Development Goals (SDG) were adopted by the United Nations' world leaders and will continue to drive progress.
        (Source: <a href="http://www.undp.org/content/undp/en/home/mdgoverview/post-2015-development-agenda.html">UNDP</a>)</p>
          </div>
          <div class="step annotation" id="step1-right-annotation" >
            <h4>Right Annotation Title</h4>
            <p>Here is the annotation text for the <strong>right</strong> annotation of step 1</p>
          </div>
        </div>
        <div class="step annotation-step" id="step2-annotation">
          <div class="annotation" id="step2-center-annotation" >
            <h4>Center Annotation Title</h4>
            <p>The number of under-five deaths has declined from about 12.7 million in 1990 to around 5.9 million in 2015. (Source: UNICEF)</p>
          </div>
        </div>
        <div class="step annotation-step" id="step3-annotation">
          <div class="annotation" id="step3-high-annotation" >
            <h4>Some countries have low child mortality rates...</h4>
            <p>Luxembourg has the lowest Child Mortality Rate in 2015 with 1.9 child deaths per 1,000 live births.</p>
          </div>
          <div class="step annotation" id="step3-low-annotation" >
            <h4>...while other countries have much higher child mortality rates.</h4>
            <p>Angola has the highest Child Mortality Rate in 2015 with 156.9 child deaths per 1,000 live births.</p>
          </div>
        </div>
        <div class="step annotation-step" id="step4-annotation">
          <div class="annotation" id="step1-right-annotation" >
            <h4>Sub-Saharan Africa</h4>
            <p>This region has the highest child mortality rates in the world. However, the annual rate of reduction has increased from 1.6 percent in 1990s to 4.1 percent in 2000-2015.</p>
          </div>
        </div>
        <div class="step annotation-step" id="step5-annotation">
          <div class="annotation" id="step1-right-annotation" >
            <h4>Sub-Saharan Africa</h4>
            <p>Sierra Leone has the highest cummulative child mortality rates from 1990-2015.</p>
          </div>
        </div>        

        <div class="step annotation-step" id="step5-annotation">
          <div class="annotation" id="step1-right-annotation" >
            <h4>How come some countries reduce their child mortality rates more than others?</h4>
            <p>Malawi has the highest rate of change from 1990 to 2015 among the countries in Sub-Saharan Africa. The country decreased its child mortality rates by 73.6%.</p>
          </div>
        </div>   

      </div>
      <div id="vis-canvas">
    </div>
</div>




			<div class ="row">
			<h1>Sub-Saharan Africa</h1>
			<p>The region has the highest child mortality rates in the world. However, the annual rate of reduction has increased from 1.6 percent in the 1990s to 4.1 percent in 2000-2015. (Source: UNICEF)</p>

			<p>(Instead of this chart, I will probably add the stepper with the same graphs that I used for my scrollytelling this week.)</p>

			<div id="lineChart"></div>
			</div>

			<div class ="row" id="page">
			<h1>Why do some of the countries higher child mortality rates than others in Sub-Saharan Africa?</h1>
			<p>Angola has the highest child mortality rate as of 2015. It also has the third highest number of child mortality due to inadequate water, sanitation, and hygeine</p>

			<p>"Water, Sanitation, and Hygeine" refers to the number of Under-5 deaths caused by inadequate Water, Hygeine, and Sanitation.</p>

			<div id="table"></div>
			</div>



			

		</div>

		<!-- Scripts for map -->
		<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.6/d3.min.js" charset="utf-8"></script>
		<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.8.2/jquery.min.js"></script>
	

		<script src="//d3js.org/d3.v3.min.js"></script>
		<script src="//d3js.org/queue.v1.min.js"></script>
		<script src="d3-legend.min.js"></script>
		<script src="//d3js.org/topojson.v1.min.js"></script>
		<script type="text/javascript" src="tooltip.js"></script>
		<script src="http://labratrevenge.com/d3-tip/javascripts/d3.tip.v0.6.3.js"></script>

		<!-- Scripts for scrollytelling -->
		<!--
		<script src="mfreeman_scroller.js"></script>
		<script src="line_chart_refactor.js"></script>
		<script src="scroller_settings.js"></script>
	-->
		<script src="https://code.jquery.com/jquery-1.9.1.min.js"></script>
		
		<script type="text/javascript" src="choropleth.js"></script>
		<script type="text/javascript" src="lineChart.js"></script>

		<script src="stepper_vis.js"></script>
		<script src="stepper.js"></script>

		<script type="text/javascript" src="stupidtable.js"></script>
		<script type="text/javascript" src="sortableChart.js"></script>



		

	</body>
</html>

line.css

.axis path,
.axis line {
  fill: none;
  stroke: none;
  shape-rendering: crispEdges;
}

path.line {
  fill: none;
  stroke-width: 1px;
  stroke-opacity: 80%;
}

.line.normal {
  stroke: gray;
}

.line.unfocused{
  stroke-opacity: 40%;
}

.line.focused {
  stroke-width: 2px;
  stroke-opacity: 100%;
  stroke: orange;
}

line_chart_refactor.js

var margin = {
top: 50,
right: 10,
bottom: 70,
left: 70
};

var width = 600;
var height = 500;

//Set up date formatting and years
var dateFormat = d3.time.format("%Y");

//Set up scales
var xScale = d3.time.scale()
.range([margin.left, width - margin.right - margin.left]);

var yScale = d3.scale.sqrt()
.range([margin.top, height - margin.bottom]);

//Configure axis generators
var xAxis = d3.svg.axis()
.scale(xScale)
.orient("bottom")
.ticks(15)
.tickFormat(function (d) {
    return dateFormat(d);
})
.innerTickSize(0);

var yAxis = d3.svg.axis()
.scale(yScale)
.orient("left")
.innerTickSize(0);

//Configure line generator
// each line dataset must have a d.year and a d.rate for this to work.
var line = d3.svg.line()
.x(function (d) {
    return xScale(dateFormat.parse(d.year));
})
.y(function (d) {
    return yScale(+d.rate);
});


//Create the empty SVG image
var svg = d3.select("#vis2")
.append("svg")
.attr("width", width)
.attr("height", height);

// Add axes

svg.append("g")
    .attr("class", "x axis")
    .attr("transform", "translate(0," + (height - margin.bottom) + ")")
    .call(xAxis)
    .append("text")
    .attr("x", width - margin.left - margin.right)
    .attr("y", margin.bottom / 3)
    .attr("dy", "1em")
    .style("text-anchor", "end")
    .attr("class", "label")
    .text("Year");

svg.append("g")
    .attr("class", "y axis")
    .attr("transform", "translate(" + margin.left + ",0)")
    .call(yAxis)
    .append("text")
    .attr("transform", "rotate(-90)")
    .attr("x", -margin.top)
    .attr("y", -2*margin.left / 3)
    .attr("dy", "1em")
    .style("text-anchor", "end")
    .attr("class", "label")
    .text("Under 5 Mortality Rate");

var years = [];

function make_data(rawdata) {

    years = d3.keys(rawdata[0]).slice(1, 65);
    console.log(years);

    //Create a new, empty array to hold our restructured dataset
    var dataset = [];

    //Loop once for each row in data
    rawdata.forEach(function (d, i) {

        var IMRs = [];

        years.forEach(function (y) { //Loop through all the years - and get the rates for this data element

            if (d[y]) { /// What we are checking is if the "y" value - the year string from our array, which would translate to a column in our csv file - is empty or not.

                IMRs.push({ //Add a new object to the new rates data array - for year, rate. These are OBJECTS that we are pushing onto the array
                    year: y,
                    rate: d[y], // this is the value for, for example, d["2004"]
                    Country: d.Country
                });
            }

        });
        dataset.push({ // At this point we are accessing one index of data from our original csv "data", above and we have created an array of year and rate data from this index. We then create a new object with the Country value from this index and the array that we have made from this index.
            country: d.Country,
            rates: IMRs // we just built this from the current index.
        });

    });

    return dataset;
}

function draw_lines(dataset) {

    console.log(dataset);

    //Set scale domains - max and min of the years
    xScale.domain(
        d3.extent(years, function (d) {
            return dateFormat.parse(d);
        }));

    // max of rates to 0 (reversed, remember)
    yScale.domain([
        d3.max(dataset, function (d) {
            return d3.max(d.rates, function (d) {
                return +d.rate;
            });
        }),
        0
    ]);

    //Make a group for each country
    var groups = svg.selectAll("g.lines")
        .data(dataset, function(d) {return d.country;}); // key value!

    groups
        .enter()
        .append("g")
        .attr("class", "lines")
        .attr("id", function (d) {
            return d.country.replace(/\s/g, '_');
        });

    groups.exit().transition().duration(1000).attr("opacity", 0).remove();

    //Within each group, create a new line/path,
    //binding just the rates data to each one
    var lines = groups.selectAll("path")
        .data(function (d) { // because there's a group with data already...
            return [d.rates]; // it has to be an array for the line function
        });

    lines
        .enter()
        .append("path")
        .attr("class", "line")
        .attr("d", line)
        .classed("normal", true)
        .classed("focused", false); // gives gray color

    lines.exit().transition().duration(1000).attr("opacity", 0).remove();

    svg.select('.x.axis').transition().duration(300).call(xAxis);

    // same for yAxis but with more transform and a title
    svg.select(".y.axis").transition().duration(300).call(yAxis);

}

lineChart.js

// =======================================================================
// 	Setup
// =======================================================================
var margin = {top: 50, right: 10, bottom: 70, left:70};
var width = 800;
var height = 600;
var criticalAreas = ["Sub-Saharan Africa"];
// Format the date
var dateFormat = d3.time.format("%Y");			

//xScale & y Scale
var xScale = d3.time.scale()
				.range([ margin.left, width - margin.right - margin.left]);

var yScale = d3.scale.sqrt()
				.range([ margin.top, height - margin.bottom]);
//Configure axis generators
var xAxis = d3.svg.axis()
				.scale(xScale)
				.orient("bottom")
				.ticks(15)
				.tickFormat(function (d) {
					return dateFormat(d);
					})
				.innerTickSize([0])
                .outerTickSize([0]);

var yAxis = d3.svg.axis()
				.scale(yScale)
				.orient("left")
				.innerTickSize([0]);

// Add a tooltop to the page - not to the svg itself!
var tooltip = d3.select("#lineChart")
                .append("div")
                .attr("class", "tooltip");

// Configure line generator
// each line dataset must have a d.year and a d.rate for this to work.
var line = d3.svg.line()
			.x(function (d) {
				return xScale(dateFormat.parse(d.year));
			})
			.y(function (d) {
				return yScale(+d.rate);
			});
// Create the empty SVG image
var svg2 = d3.select("#lineChart")
			.append("svg")
			.attr("width", width)
			.attr("height", height);

// =======================================================================
// Creating the Multiple Lines from the Data
// =======================================================================

//Load data
d3.csv("underFiveMortalityRegion.csv", function (data) {

	var years = ["1960", "1961", "1962", "1963", "1964", "1965", "1966", "1967", "1968", "1969", "1970", "1971", "1972", "1973", "1974", "1975", "1976", "1977", "1978", "1979", "1980", "1981", "1982", "1983", "1984", "1985", "1986", "1987", "1988", "1989", "1990", "1991", "1992", "1993", "1994", "1995", "1996", "1997", "1998", "1999", "2000", "2001", "2002", "2003", "2004", "2005", "2006", "2007", "2008", "2009", "2010", "2011", "2012", "2013", "2014", "2015"];
	console.log(years);
// var years = d3.keys(data[0]).slice(1,55);
//what exactly is slice?
	// or you could get this by doing:

	// var years = d3.keys(data[0]).slice(0, 54-4); //

	//Create a new, empty array to hold our restructured dataset

	var dataset = [];

	//Loop once for each row in data
	data.forEach(function (d, i) {
		
		var childmortality = [];

	//Loop through all the years - and get the mortalityRate for this data element
		years.forEach(function (y) { //Loop through all the years - and get the rates for this data element


            if (d[y]) { /// What we are checking is if the "y" value - the year string from our array, which would translate to a column in our csv file - is empty or not.

                childmortality.push({ //Add a new object to the new rates data array - for year, rate. These are OBJECTS that we are pushing onto the array
                    year: y,
                    rate: d[y], // this is the value for, for example, d["2004"]
                    region: d.region
				});
			}
		});

	dataset.push({ // At this point we are accessing one index of data from our original csv "data", above and we have created an array of year and rate data from this index. We then create a new object with the region value from this index and the array that we have made from this index.
            region: d.region,
            rates: childmortality // we just built this from the current index.
			});

	});

	//Uncomment to log the original data to the console
	// console.log(data);

	//Uncomment to log the newly restructured dataset to the console
	console.log(data);
	console.log(dataset);


	//Set scale domains - max and mine of the years
	xScale.domain(
        d3.extent(years, function (d) {
            return dateFormat.parse(d);
        }));

	// max of mortalityRate to 0 (reversed, remember)
	yScale.domain([
    	d3.max(dataset, function (d) {
            return d3.max(d.rates, function (d) {
                return +d.rate;
            });
        }),
        0
    ]);



	//Make a group for each region
	var groups = svg2.selectAll("g.lines")
					.data(dataset)
					.enter()
					.append("g")
					.attr("class", "lines");
	groups.selectAll("path")
        .data(function (d) { // because there's a group with data already...
            return [d.rates]; // it has to be an array for the line function
        })
        .enter()
        .append("path")
        .attr("class", "line")
        .classed("criticalAreas", function (d, i) {
            console.log(d[i].region);
            if ($.inArray(d[i].region, criticalAreas) != -1) {
                console.log("true");
                return true;
            } else {
                console.log("false");
                return false;
            }
        })
        .classed("world", function (d, i) {
        	console.log(d[i].region);
        	if (d[i].region === "World") {
        		console.log("true");
        		return true;
        	} else {
        		console.log("false");
        		return false;
        	}
        })
        .attr("d", line);

	groups.selectAll("path")
			.data(function (d) {
				return [d.rates];
			})
			.enter()
			.append("path")
			.attr("class", "line")
			.classed("criticalAreas", function (d, i) {
				console.log(d[i].region);
				if ($.inArray(d[i].region, criticalAreas) != -1) {
					console.log("true");
					return true;
				} else {
					console.log("false");
					return false;
				}
			})
			.attr("d", line);
// =======================================================================
// Tooltip dots
// =======================================================================
    var circles = groups.selectAll("circle") //Circles haven't been created yet
                        .data(function(d) {
                            return d.rates;
                        })
                        .enter()
                        .append("circle");
        circles.attr("cx", function(d) {
                        return xScale(dateFormat.parse(d.year));
                    })
                .attr("cy", function(d) {
                    return yScale(d.rate);
                })
                .attr("r", 3)
                .style("opacity", 0);  // this is optional - if you want visible dots or not!
        // Adding a subtle animation to increase the dot size when over it!

        circles.on("mouseover", mouseoverFunc)
                .on("mousemove", mousemoveFunc)
                .on("mouseout", mouseoutFunc);

        // We're putting the text label at the group level, where the country name was originally.
        groups.append("text")
                .datum(function(d) {
                    console.log("Here", {name: d.region, value: d.rates[d.rates.length - 1]});
                    return {name: d.region, value: d.rates[d.rates.length - 1]};
                })
                .attr("transform", function(d) {
                    console.log("in transform", d);
                    if (d.value) {
                        return "translate(" + xScale(dateFormat.parse(d.value.year)) + "," + yScale(+d.value.rate) + ")";
                    }
                    else {
                        return null;
                    }
                })
                .attr("x", 10)
                .attr("dy", ".35em")
                .text(function(d) {
                    if (d.region == "World") {
                        return d.name;
                    }
                })
                .attr("class", "linelabel");

// =======================================================================
// Adding Axes
// =======================================================================

    svg2.append("g")
        .attr("class", "x axis")
        .attr("transform", "translate(0," + (height - margin.bottom) + ")")
        .call(xAxis)
        .append("text")
        .attr("x", width - margin.left - margin.right)
        .attr("y", margin.bottom / 3)
        .attr("dy", "1em")
        .style("text-anchor", "end")
        .attr("class", "label")
        .text("Year");

    svg2.append("g")
        .attr("class", "y axis")
        .attr("transform", "translate(" + margin.left + ",0)")
        .call(yAxis)
        .append("text")
        .attr("transform", "rotate(-90)")
        .attr("x", -margin.top -5)
        .attr("y", -margin.left)
        .attr("dy", "1em")
        .style("text-anchor", "end")
        .attr("class", "label")
        .text("Under 5 Mortality Rate");

// =======================================================================
// Mouse Functions
// =======================================================================
    function mouseoverFunc(d) {
        d3.select(this)
            .transition()
            .duration(50)
            .style("opacity", 1)
            .attr("r", 7);
        tooltip
            .style("display", null)
            .html("<p>Region: " + d.region +
                "<br>Year: " + d.year +
                "<br>Rate: " + d.rate + "</p>");
    }

    function mousemoveFunc(d) {
        tooltip
            .style("top", (d3.event.pageY - 10) + "px")
            .style("left", (d3.event.pageX + 10) + "px");
    }

    function mouseoutFunc(d) {
        d3.select(this)
            .transition()
            .style("opacity", 0)
            .attr("r", 3);
        tooltip.style("display", "none");
    }
});

    // d3.selectAll("g.lines")
    //     .on("mouseover", mouseoverFunc)
    //     .on("mouseout", mouseoutFunc)
    //     .on("mousemove", mousemoveFunc);

//     function mouseoutFunc() {

//         d3.selectAll("path.line").classed("unfocused", false).classed("focused", false);
//         tooltip.style("display", "none"); // this sets it to invisible!
//     }

//     function mouseoverFunc(d) {

//         d3.selectAll("path.line").classed("unfocused", true);
//         // below code sets the sub saharan africa countries out even more - they only go "unfocused" if a sub saharan region is selected. Otherwise, they remain at the regular opacity. I experiemented with this because I do want to focus on the ssAfrica countries rather than any others (so they are only "unfocused" against each other, not to other countries... This way all other countries are always compared to the ssAfrica ones... but not sure if this method is effective).
//         //         if(!d3.select(this).select("path.line").classed("ssAfrica")) {
//         //             d3.selectAll("path.ssAfrica").classed("unfocused", false);
//         //         }

//         d3.select(this).select("path.line").classed("unfocused", false).classed("focused", true);
//         tooltip
//             .style("display", null) // this removes the display none setting from it
//             .html("<p><span>" + d.region + "</span></p>");
//     }

//     function mousemoveFunc(d) {
//         console.log("events", window.event, d3.event);
//         tooltip
//             .style("top", (d3.event.pageY - 45) + "px")
//             .style("left", (d3.event.pageX + 5) + "px");
//     }

// }); //end of data csv

maternalMortalityRegion.csv

median-U5MRbyCountry.csv

median-U5MRbyCountry_region.csv

mfreeman_scroller.js

/**
 * scroller - handles the details
 * of figuring out which section
 * the user is currently scrolled
 * to.
 *
 */
function scroller() {
  var windowHeight;
  var container = d3.select('body');

  // Set height
  var height = $('.step:last').height()
  var marginBottom = parseInt($('.step:last').css('margin-bottom'))
  var newHeight = $(window).height() - height - marginBottom
  $('.step:last').height(newHeight)
  console.log('height ', height, ' new height ', newHeight)
  // event dispatcher
  var dispatch = d3.dispatch("active", "progress");

  // d3 selection of all the
  // text sections that will
  // be scrolled through
  var sections = null;

  // array that will hold the
  // y coordinate of each section
  // that is scrolled through
  var sectionPositions = [];
  var currentIndex = -1;
  // y coordinate of
  var containerStart = 0;

  /**
   * scroll - constructor function.
   * Sets up scroller to monitor
   * scrolling of els selection.
   *
   * @param els - d3 selection of
   *  elements that will be scrolled
   *  through by user.
   */
  function scroll(els) {
    sections = els;
    // when window is scrolled call
    // position. When it is resized
    // call resize.
    d3.select(window)
      .on("scroll.scroller", position)
      .on("resize.scroller", resize);

    // manually call resize
    // initially to setup
    // scroller.
    resize();

    // hack to get position
    // to be called once for
    // the scroll position on
    // load.
    d3.timer(function() {
      position();
      return true;
    });
  }

  /**
   * resize - called initially and
   * also when page is resized.
   * Resets the sectionPositions
   *
   */
  function resize() {
    // sectionPositions will be each sections
    // starting position relative to the top
    // of the first section.
    sectionPositions = [];
    var startPos;
    sections.each(function(d,i) {
      var top = this.getBoundingClientRect().top;
      if(i === 0) {
        startPos = top;
      }
      sectionPositions.push(top - startPos);
    });
    containerStart = container.node().getBoundingClientRect().top + window.pageYOffset;
  }

  /**
   * position - get current users position.
   * if user has scrolled to new section,
   * dispatch active event with new section
   * index.
   *
   */
  function position() {
    var pos = window.pageYOffset - 10 - containerStart;
    var sectionIndex = d3.bisect(sectionPositions, pos);
    sectionIndex = Math.min(sections.size() - 1, sectionIndex);

    if (currentIndex !== sectionIndex) {
      dispatch.active(sectionIndex);
      currentIndex = sectionIndex;
    }

    var prevIndex = Math.max(sectionIndex - 1, 0);
    var prevTop = sectionPositions[prevIndex];
    var progress = (pos - prevTop) / (sectionPositions[sectionIndex] - prevTop);
    dispatch.progress(currentIndex, progress);
  }

  /**
   * container - get/set the parent element
   * of the sections. Useful for if the
   * scrolling doesn't start at the very top
   * of the page.
   *
   * @param value - the new container value
   */
  scroll.container = function(value) {
    if (arguments.length === 0) {
      return container;
    }
    container = value;
    return scroll;
  };

  // Update function
  scroll.update = function(action) {
    if (arguments.length === 0) {
      return update;
    }
    scroll.on('active', function(index) {
      // highlight current step text
      d3.selectAll('.step')
        .style('opacity',  function(d,i) { return i == index ? 1 : 0.1; });
      action(index)
  });
    return scroll;
  };

  // 

  // allows us to bind to scroller events
  // which will interally be handled by
  // the dispatcher.
  d3.rebind(scroll, dispatch, "on");

  return scroll;
}

reset.css

/* HTML5 ✰ Boilerplate
 * ==|== normalize ==========================================================
 */

article, aside, details, figcaption, figure, footer, header, hgroup, nav, section { display: block; }
audio, canvas, video { display: inline-block; *display: inline; *zoom: 1; }
audio:not([controls]) { display: none; }
[hidden] { display: none; }

html { font-size: 100%; overflow-y: scroll; -webkit-text-size-adjust: 100%; -ms-text-size-adjust: 100%; }
body { margin: 0; font-size: 13px; line-height: 1.231; }
body, button, input, select, textarea { font-family: sans-serif; color: #222; }

::-moz-selection { background: #fe57a1; color: #fff; text-shadow: none; }
::selection { background: #fe57a1; color: #fff; text-shadow: none; }

a { color: #00e; }
a:visited { color: #551a8b; }
a:hover { color: #06e; }
a:focus { outline: thin dotted; }
a:hover, a:active { outline: 0; }

abbr[title] { border-bottom: 1px dotted; }
b, strong { font-weight: bold; }
blockquote { margin: 1em 40px; }
dfn { font-style: italic; }
hr { display: block; height: 1px; border: 0; border-top: 1px solid #ccc; margin: 1em 0; padding: 0; }
ins { background: #ff9; color: #000; text-decoration: none; }
mark { background: #ff0; color: #000; font-style: italic; font-weight: bold; }
pre, code, kbd, samp { font-family: monospace, monospace; _font-family: 'courier new', monospace; font-size: 1em; }
pre { white-space: pre; white-space: pre-wrap; word-wrap: break-word; }
q { quotes: none; }
q:before, q:after { content: ""; content: none; }
small { font-size: 85%; }
sub, sup { font-size: 75%; line-height: 0; position: relative; vertical-align: baseline; }
sup { top: -0.5em; }
sub { bottom: -0.25em; }
ul, ol { margin: 1em 0; padding: 0 0 0 40px; }
dd { margin: 0 0 0 40px; }
nav ul, nav ol { list-style: none; list-style-image: none; margin: 0; padding: 0; }
img { border: 0; -ms-interpolation-mode: bicubic; vertical-align: middle; }
svg:not(:root) { overflow: hidden; }
figure { margin: 0; }

form { margin: 0; }
fieldset { border: 0; margin: 0; padding: 0; }
label { cursor: pointer; }
legend { border: 0; *margin-left: -7px; padding: 0; }
button, input, select, textarea { font-size: 100%; margin: 0; vertical-align: baseline; *vertical-align: middle; }
button, input { line-height: normal; *overflow: visible; }
table button, table input { *overflow: auto; }
button, input[type="button"], input[type="reset"], input[type="submit"] { cursor: pointer; -webkit-appearance: button; }
input[type="checkbox"], input[type="radio"] { box-sizing: border-box; }
input[type="search"] { -webkit-appearance: textfield; -moz-box-sizing: content-box; -webkit-box-sizing: content-box; box-sizing: content-box; }
input[type="search"]::-webkit-search-decoration { -webkit-appearance: none; }
button::-moz-focus-inner, input::-moz-focus-inner { border: 0; padding: 0; }
textarea { overflow: auto; vertical-align: top; resize: vertical; }
input:valid, textarea:valid {  }
input:invalid, textarea:invalid { background-color: #f0dddd; }

table { border-collapse: collapse; border-spacing: 0; }
td { vertical-align: top; }


/* ==|== primary styles =====================================================
   Author: 
   ========================================================================== */
















/* ==|== non-semantic helper classes ======================================== */
.ir { display: block; border: 0; text-indent: -999em; overflow: hidden; background-color: transparent; background-repeat: no-repeat; text-align: left; direction: ltr; }
.ir br { display: none; }
.hidden { display: none !important; visibility: hidden; }
.visuallyhidden { border: 0; clip: rect(0 0 0 0); height: 1px; margin: -1px; overflow: hidden; padding: 0; position: absolute; width: 1px; }
.visuallyhidden.focusable:active, .visuallyhidden.focusable:focus { clip: auto; height: auto; margin: 0; overflow: visible; position: static; width: auto; }
.invisible { visibility: hidden; }
.clearfix:before, .clearfix:after { content: ""; display: table; }
.clearfix:after { clear: both; }
.clearfix { zoom: 1; }


/* ==|== media queries ====================================================== */

@media only screen and (min-width: 480px) {


}

@media only screen and (min-width: 768px) {

}



/* ==|== print styles ======================================================= */
 
@media print {
  * { background: transparent !important; color: black !important; text-shadow: none !important; filter:none !important; -ms-filter: none !important; } 
  a, a:visited { text-decoration: underline; }
  a[href]:after { content: " (" attr(href) ")"; }
  abbr[title]:after { content: " (" attr(title) ")"; }
  .ir a:after, a[href^="javascript:"]:after, a[href^="#"]:after { content: ""; } 
  pre, blockquote { border: 1px solid #999; page-break-inside: avoid; }
  thead { display: table-header-group; }
  tr, img { page-break-inside: avoid; }
  img { max-width: 100% !important; }
  @page { margin: 0.5cm; }
  p, h2, h3 { orphans: 3; widows: 3; }
  h2, h3 { page-break-after: avoid; }
}

sortableChart.js

d3.csv("maternalMortalityRegion.csv", function(error, myData) {

		        if (error) {
		          console.log("Had an error loading file.");
		        }

		        // Default: Sorted by Region
		        myData.sort(function(a, b){
				return d3.descending(a.year2015, b.year2015);
				});

				// We'll be using simpler data as values, not objects.
				var myArray = [];
				var allDifferences = [];

				myData.forEach(function(d, i){

					d.difference = d.year2013 - d.year1990;


				 // Add a new array with the values of each:
			 	 myArray.push([d.Country, d.year2015, d.rateChange, d.waterDeaths]);
			 	 allDifferences.push(d.difference);

				});

				console.log("sorted", myData);

				console.log(allDifferences);
				// console.log(myArray);
				

				// console.log("sorted", myData);



				var table = d3.select("#table").append("table");

				var header = table.append("thead").append("tr");

				// Made some objects to construct the header in code:
				// The sort_type is for the Jquery sorting function.
				var headerObjs = [
					{ label: "Country \t", sort_type: "string" },
					{ label: "\t 2015 \t", sort_type: "int" },
					{ label: "\t Rate Change \t", sort_type: "int" },
					{ label: "\t \t Water, Sanitation, and Hygeine", sort_type: "int" },
				];

				header
					.selectAll("th")
					.data(headerObjs)
					.enter()
					.append("th")
					.attr("data-sort", function (d) { return d.sort_type;})
          .text(function(d) { return d.label; });

        var tablebody = table.append("tbody");

        rows = tablebody
        	.selectAll("tr")
        	.data(myArray)
        	.enter()
        	.append("tr");

        // We built the rows using the nested array - now each row has its own array.

        // Scale
        // console.log('Extent is ', d3.extent(allDifferences));

        var colorScale = d3.scale.linear()
        	// .domain(d3.extent(allDifferences))
        	.range(["#FFF", "#FF9900"]);


        cells = rows.selectAll("td")
        	// each row has data associated; we get it and enter it for the cells.
        	.data(function(d) {
        		return d;
        	})
        	.enter()
        	.append("td")
        	.style("background-color", function(d,i){
        		// for the last element in the row, we color the background:
        		if (i === 2) {
        			return colorScale(d);
        		}
        	})
        	.style("color", function(d,i){
        		if (i === 2) {
        			return "black";
        		}
        	})
        	.text(function(d) {
        		return "\t" + d + "\t";
        	});

        //jquery sorting applied to it - could be done with d3 and events.
        $("table").stupidtable();

    		});
		

stepper.css

/* This is just to make things look a bit better */
body {
  font-size: 1.2em;
}

h2.subtitle {
  font-size: 0.8em;
  padding-left: 10px;
  color: #666;
}

/* Basic styling for the step links */
a.step-link {
  padding: 5px;
  background-color: #444;
  color: #666;
  text-decoration: none;
}

a.step-link:hover, a.active {
  color: #ddd;
}

/*#container{
  margin: auto;
  padding-top: 20px;
  width: 1000px;
}*/

/* Here is our relatively positioned
 * container div to hold the rest of the
 * visualization */
#vis-container {
  position: relative;
  display: block;
  padding-left: auto;
  padding-right: auto;
  width: 1000px;
  height: 700px;
  margin-top: 10px;
}

/* All the .annotation-step divs are inside
 * #annotation-steps. z-index ensures annotations
 * stay on top of visualization. */
#annotation-steps {
  position: absolute;
  z-index: 40;
}

#vis-nav {
  z-index: 20;
}

/* This is where you would create the actual visualization.
 * Right now, lets just change the background color. */
#vis-canvas {
  position: absolute;
  width: 100%;
  height: 100%;
  z-index: 10;
  overflow: hidden;
  background-color: #eee;
}

/* By default, all annotation-steps are hidden. */
.annotation-step {
  position: absolute;
  display: none;
}

/* Finally we can position each annotation exactly how
 * we want. */
.annotation {
  position: absolute;
}

#step1-left-annotation {
  left: 30px;
  top: 120px;
  width: 200px;
}
 
#step1-right-annotation {
  left: 770px;
  top: 120px;
  width: 200px;
}

#step2-center-annotation {
  left: 290px;
  top: 40px;
  width: 400px;
  text-align: center;
}

#step3-high-annotation {
  left: 50px;
  top: 30px;
  width: 200px;
}

#step3-low-annotation {
  left: 730px;
  top: 550px;
  width: 200px;
}

stepper.js

function switchStep(newStep)
{
  d3.selectAll(".step-link").classed("active", false);
  d3.select("#" + newStep).classed("active", true);
}

function switchAnnotation(newStep)
{
  d3.selectAll(".annotation-step")
    .style("display", "none")
    .style("opacity", 0.0);

  d3.select("#" + newStep + "-annotation")
    .style("display", "block")
    .transition().delay(300).duration(500)
      .style("opacity", 1);
}

d3.selectAll("a.step-link").on("click", function(d) {
  var clickedStep = d3.select(this).attr("id");
  switchStep(clickedStep);
  switchAnnotation(clickedStep);
  return false;
});

stepper_vis.css

svg {
    /*    padding: 1em;*/
    background-color: rgb(255, 255, 255);
    display: block;
    margin-left: auto;
    margin-right: auto;
}

svg rect:hover {
    opacity: .3;
}

svg circle:hover {
    opacity: .3;
}

svg g {
    fill: #ACACAC;
}

svg g text.label,
svg g text.ylabel {
    fill: #2A2A2A;
}

svg {
    background-color: white;
}

.axis path,
.axis line {
    fill: none;
    stroke: #D3D3D3;
    stroke-width: 1px;
}

.line {
    stroke: #FF9900;
    fill: none;
    stroke-opacity: 25%;
    stroke-width: 1px;
}

.ssAfrica {
    stroke: red;
    stroke-opacity: 50%;
}

.unfocused {
    stroke-opacity: 25%;
}

.focused {
    stroke-width: 2px;
    stroke-opacity: 100%;
}


.axis text,
.aside {
    font-family: sans-serif;
    font-size: 11px;
}

.header {
    width: 70%;
    margin-left: 16px;
}

h1 {
    font-family: 'Roboto', sans-serif;
    font-size: 1.75em;
    margin-top: 1em;
    font-weight: 700;
    color: #0099FF;
    text-transform: uppercase;
}

h2 {
    font-family: 'Roboto', sans-serif;
    text-align: justify;
    line-height: 1.25em;
    font-weight: 700;
    font-size: 1em;
}

p {
    font-family: 'Lora', serif;
    font-size: 15px;
    line-height: 1.25em;
    text-align: justify;
}

#sources {
    font-size: 12px;
    font-style: italic;
    color: rgb(0, 0, 0);
    font-style: italic;
}

a {
    color: #0099FF;
    text-decoration: none;
}

a:hover {
    color: rgb(255, 0, 153);
}

.sans {
 font-family: sans-serif;
}

.orange {
    color: #FF9900;
}

.blue {
    color: #0099FF;
}

.red {
    color: red;
}

.tooltip {
    position: absolute;
    z-index: 10;
}

.tooltip p {
    background-color: rgba(255, 255, 255, .8);
    padding: .5em 1em;
    font-size: 12px;
    line-height: 17px;
    color: black;
}

.tooltipHeader {
    font-weight: 700;
    font-size: 12.5px;
}

stepper_vis.js

/*======================================================================
   Setup
 ======================================================================*/

var margin = {
    top: 50,
    right: 10,
    bottom: 70,
    left: 50
};

var width = $(window).width() * 0.45;
var height = $(window).height() * .7;

// var subSaharanAfrica = ["Angola", "Benin", "Botswana", "Burkina Faso", "Burundi", "Cameroon", "Cabo Verde", "Central African Republic", "Chad", "Comoros", "Congo", "Cote d'Ivoire", "Democratic Republic of the Congo", "Djibouti", "Equatorial Guinea", "Eritrea", "Ethiopia", "Gabon", "Gambia", "Ghana", "Guinea", "Guinea-Bissau", "Kenya", "Lesotho", "Liberia", "Madagascar", "Malawi", "Mali", "Mauritania", "Mauritius", "Mozambique", "Namibia", "Niger", "Nigeria", "Rwanda", "Sao Tome and Principe", "Senegal", "Seychelles", "Sierra Leone", "Somalia", "South Africa", "Sudan", "Swaziland", "United Republic of Tanzania", "Togo", "Uganda", "Zambia", "Zimbabwe"];

//Set up date formatting and years
var dateFormat = d3.time.format("%Y");

//Set up scales
var xScale = d3.time.scale()
    .range([margin.left, width - margin.right - margin.left]);

var yScale = d3.scale.sqrt()
    .range([margin.top, height - margin.bottom]);

//Configure axis generators
var xAxis = d3.svg.axis()
    .scale(xScale)
    .orient("bottom")
    .ticks(15)
    .tickFormat(function (d) {
        return dateFormat(d);
    })
    .innerTickSize([0]);

var yAxis = d3.svg.axis()
    .scale(yScale)
    .orient("left")
    .innerTickSize([0]);

// add a tooltip to the page - not to the svg itself!
var tooltip = d3.select("vis-canvas")
    .append("div")
    .attr("class", "tooltip");

//Configure line generator
// each line dataset must have a d.year and a d.rate for this to work.
var line = d3.svg.line()
    .x(function (d) {
        return xScale(dateFormat.parse(d.year));
    })
    .y(function (d) {
        return yScale(+d.rate);
    });



//Create the empty svg image and select the div with the id="vis"
var svgLineGraph = d3.select("#vis-canvas")
    .append("svg")
    .attr("width", width)
    .attr("height", height);


/*======================================================================
   Creating the Multiple Lines from the Data
 ======================================================================*/

//Load data - first is INFANT mortality rates, second is UNDER 5 mortality rates. Similar, but many more peaks in the Under 5.
//d3.csv("median-IMRbyCountry.csv", function (data) {
d3.csv("median-U5MRbyCountry_region.csv", function (data) {

    //Data is loaded in, but we need to restructure it.
    //Remember, each line requires an array of x/y pairs;
    //that is, an array of arrays, like so:
    //
    //	[ [x: 1, y: 1], [x: 2, y: 2], [x: 3, y: 3] ]
    //
    //We, however, are using 'year' as x and 'amount' as y.
    //We also need to know which country belongs to each
    //line, so we will build an array of objects that is
    //structured like this:
    /*

    	[
    		{
    			country: "Australia",
    			emissions: [
    						{ year: 1961, amount: 90589.568 },
    						{ year: 1962, amount: 94912.961 },
    						{ year: 1963, amount: 101029.517 },
    						…
    					   ]
    		},
    		{
    			country: "Bermuda",
    			emissions: [
    						{ year: 1961, amount: 176.016 },
    						{ year: 1962, amount: 157.681 },
    						{ year: 1963, amount: 150.347 },
    						…
    					   ]
    		},
    		…
    	 ]

    */

    //New array with all the years, for referencing later
    //var years = ["1961", "1962", "1963", "1964", "1965", "1966", "1967", "1968", "1969", "1970", "1971", "1972", "1973", "1974", "1975", "1976", "1977", "1978", "1979", "1980", "1981", "1982", "1983", "1984", "1985", "1986", "1987", "1988", "1989", "1990", "1991", "1992", "1993", "1994", "1995", "1996", "1997", "1998", "1999", "2000", "2001", "2002", "2003", "2004", "2005", "2006", "2007", "2008", "2009", "2010"];

    // or you could get this by doing:

    var years = d3.keys(data[0]).slice(2, 26); //
    // console.log(years);

    //Create a new, empty array to hold our restructured dataset
    var dataset = [];

    //Loop once for each row in data
    data.forEach(function (d, i) {

        var IMRs = [];

        years.forEach(function (y) { //Loop through all the years - and get the rates for this data element


            if (d[y]) { /// What we are checking is if the "y" value - the year string from our array, which would translate to a column in our csv file - is empty or not.

                IMRs.push({ //Add a new object to the new rates data array - for year, rate. These are OBJECTS that we are pushing onto the array
                    year: y,
                    rate: d[y], // this is the value for, for example, d["2004"]
                    Country: d.Country
                });
            }

        });

        dataset.push({ // At this point we are accessing one index of data from our original csv "data", above and we have created an array of year and rate data from this index. We then create a new object with the Country value from this index and the array that we have made from this index.
            country: d.Country,
            rates: IMRs // we just built this from the current index.
        });

    });

    //Uncomment to log the original data to the console
    console.log(data);

    //Uncomment to log the newly restructured dataset to the console
    console.log(dataset);


    //Set scale domains - max and min of the years
    xScale.domain(
        d3.extent(years, function (d) {
            return dateFormat.parse(d);
        }));

    // max of rates to 0 (reversed, remember)
    yScale.domain([
    	d3.max(dataset, function (d) {
            return d3.max(d.rates, function (d) {
                return +d.rate;
            });
        }),
        0
    ]);


    //Make a group for each country
    var groups = svgLineGraph.selectAll("g.lines")
        .data(dataset)
        .enter()
        .append("g")
        .attr("class", "lines");

    //Within each group, create a new line/path,
    //binding just the rates data to each one
    groups.selectAll("path")
        .data(function (d) { // because there's a group with data already...
            return [d.rates]; // it has to be an array for the line function
        })
        .enter()
        .append("path")
        .attr("class", "line")
        // .classed("ssAfrica", function (d, i) {
        //     console.log(d[i].Country);
        //     if ($.inArray(d[i].Country, subSaharanAfrica) != -1) {
        //         console.log("true");
        //         return true;
        //     } else {
        //         console.log("false");
        //         return false;
        //     }
        // })
        .attr("d", line);


    /*======================================================================
      Adding the Axes
    ======================================================================*/
    svgLineGraph.append("g")
        .attr("class", "x axis")
        .attr("transform", "translate(0," + (height - margin.bottom) + ")")
        .call(xAxis)
        .append("text")
        .attr("x", width - margin.left - margin.right)
        .attr("y", margin.bottom / 3)
        .attr("dy", "1em")
        .style("text-anchor", "end")
        .attr("class", "label")
        .text("Year");

    svgLineGraph.append("g")
        .attr("class", "y axis")
        .attr("transform", "translate(" + margin.left + ",0)")
        .call(yAxis)
        .append("text")
        .attr("transform", "rotate(-90)")
        .attr("x", -margin.top)
        .attr("y", -2*margin.left / 3)
        .attr("dy", "1em")
        .style("text-anchor", "end")
        .attr("class", "label")
        .text("Under 5 Mortality Rate");


    /*======================================================================
      Mouse Functions
    ======================================================================*/
    d3.selectAll("g.lines")
        .on("mouseover", mouseoverFunc)
        .on("mouseout", mouseoutFunc)
        .on("mousemove", mousemoveFunc);
    d3.select("#step1")
        .on("click", function(d,i) {
            d3.select("#step2").classed("selected", false);
            d3.select("#step3").classed("selected", false);
            d3.select("#step4").classed("selected", false);
            d3.select("#step5").classed("selected", false);
            d3.select("#step1").classed("selected", true);
        })

    function mouseoutFunc() {

        d3.selectAll("path.line").classed("unfocused", false).classed("focused", false);
        tooltip.style("display", "none"); // this sets it to invisible!
    }

    function mouseoverFunc(d) {

        d3.selectAll("path.line").classed("unfocused", true);
        // below code sets the sub saharan africa countries out even more - they only go "unfocused" if a sub saharan country is selected. Otherwise, they remain at the regular opacity. I experiemented with this because I do want to focus on the ssAfrica countries rather than any others (so they are only "unfocused" against each other, not to other countries... This way all other countries are always compared to the ssAfrica ones... but not sure if this method is effective).
        //         if(!d3.select(this).select("path.line").classed("ssAfrica")) {
        //             d3.selectAll("path.ssAfrica").classed("unfocused", false);
        //         }

        d3.select(this).select("path.line").classed("unfocused", false).classed("focused", true);
        tooltip
            .style("display", null) // this removes the display none setting from it
            .html("<p><span class='tooltipHeader sans'>" + d.country + "</span></p>");
    }

    function mousemoveFunc(d) {
        console.log("events", window.event, d3.event);
        tooltip
            .style("top", (d3.event.pageY - 45) + "px")
            .style("left", (d3.event.pageX + 5) + "px");
    }



}); // end of data csv

stupidtable.js

// Stupid jQuery table plugin.

(function($) {
  $.fn.stupidtable = function(sortFns) {
    return this.each(function() {
      var $table = $(this);
      sortFns = sortFns || {};
      sortFns = $.extend({}, $.fn.stupidtable.default_sort_fns, sortFns);
      $table.data('sortFns', sortFns);

      $table.on("click.stupidtable", "thead th", function() {
          $(this).stupidsort();
      });
    });
  };


  // Expects $("#mytable").stupidtable() to have already been called.
  // Call on a table header.
  $.fn.stupidsort = function(force_direction){
    var $this_th = $(this);
    var th_index = 0; // we'll increment this soon
    var dir = $.fn.stupidtable.dir;
    var $table = $this_th.closest("table");
    var datatype = $this_th.data("sort") || null;

    // No datatype? Nothing to do.
    if (datatype === null) {
      return;
    }

    // Account for colspans
    $this_th.parents("tr").find("th").slice(0, $(this).index()).each(function() {
      var cols = $(this).attr("colspan") || 1;
      th_index += parseInt(cols,10);
    });

    var sort_dir;
    if(arguments.length == 1){
        sort_dir = force_direction;
    }
    else{
        sort_dir = force_direction || $this_th.data("sort-default") || dir.ASC;
        if ($this_th.data("sort-dir"))
           sort_dir = $this_th.data("sort-dir") === dir.ASC ? dir.DESC : dir.ASC;
    }


    $table.trigger("beforetablesort", {column: th_index, direction: sort_dir});

    // More reliable method of forcing a redraw
    $table.css("display");

    // Run sorting asynchronously on a timout to force browser redraw after
    // `beforetablesort` callback. Also avoids locking up the browser too much.
    setTimeout(function() {
      // Gather the elements for this column
      var column = [];
      var sortFns = $table.data('sortFns');
      var sortMethod = sortFns[datatype];
      var trs = $table.children("tbody").children("tr");

      // Extract the data for the column that needs to be sorted and pair it up
      // with the TR itself into a tuple. This way sorting the values will
      // incidentally sort the trs.
      trs.each(function(index,tr) {
        var $e = $(tr).children().eq(th_index);
        var sort_val = $e.data("sort-value");

        // Store and read from the .data cache for display text only sorts
        // instead of looking through the DOM every time
        if(typeof(sort_val) === "undefined"){
          var txt = $e.text();
          $e.data('sort-value', txt);
          sort_val = txt;
        }
        column.push([sort_val, tr]);
      });

      // Sort by the data-order-by value
      column.sort(function(a, b) { return sortMethod(a[0], b[0]); });
      if (sort_dir != dir.ASC)
        column.reverse();

      // Replace the content of tbody with the sorted rows. Strangely
      // enough, .append accomplishes this for us.
      trs = $.map(column, function(kv) { return kv[1]; });
      $table.children("tbody").append(trs);

      // Reset siblings
      $table.find("th").data("sort-dir", null).removeClass("sorting-desc sorting-asc");
      $this_th.data("sort-dir", sort_dir).addClass("sorting-"+sort_dir);

      $table.trigger("aftertablesort", {column: th_index, direction: sort_dir});
      $table.css("display");
    }, 10);

    return $this_th;
  };

  // Call on a sortable td to update its value in the sort. This should be the
  // only mechanism used to update a cell's sort value. If your display value is
  // different from your sort value, use jQuery's .text() or .html() to update
  // the td contents, Assumes stupidtable has already been called for the table.
  $.fn.updateSortVal = function(new_sort_val){
  var $this_td = $(this);
    if($this_td.is('[data-sort-value]')){
      // For visual consistency with the .data cache
      $this_td.attr('data-sort-value', new_sort_val);
    }
    $this_td.data("sort-value", new_sort_val);
    return $this_td;
  };

  // ------------------------------------------------------------------
  // Default settings
  // ------------------------------------------------------------------
  $.fn.stupidtable.dir = {ASC: "asc", DESC: "desc"};
  $.fn.stupidtable.default_sort_fns = {
    "int": function(a, b) {
      return parseInt(a, 10) - parseInt(b, 10);
    },
    "float": function(a, b) {
      return parseFloat(a) - parseFloat(b);
    },
    "string": function(a, b) {
      return a.localeCompare(b);
    },
    "string-ins": function(a, b) {
      a = a.toLocaleLowerCase();
      b = b.toLocaleLowerCase();
      return a.localeCompare(b);
    }
  };
})(jQuery);

style.css

body {
    font-family: Helvetica, Arial, sans-serif;
    color: rgb(0,153,255);
    background-image: url("unicef.jpg");
}

.container {
    /*background-color: rgba(255, 255, 255, 0.9);*/
    background-color: #fff;

}

.row {
    padding-right: 1em;
    padding-left: 1em;
}

h1 {
    font-size: 30px;
    margin-top: 0px;
    text-align: center;
}
h2 {
    font-size: 20px;
}
p {
    color: #000;
}

/*======================================================================
    Style for the Chloropleth world map for child mortality
======================================================================*/
.countries {
    stroke: #fff;
    stroke-width:1px;
}

.countries:hover{
    opacity: .7;
}

.legendLinear text {
    font-size: 9px;
}

svg {
    display: block;
    margin: auto;
} 

.d3-tip {
    padding: 10px 15px;
    background: rgba(255, 255, 255, 0.5);
    color: #0099FF;
    border-radius: 2px;
}
.paleblue {
    color: #d1e5f0;
}
.red {
    color: #b2182b;
}
.underlineBold {
    text-decoration: underline;
    font-weight: bold;
}
/*======================================================================
    Style for the Scrollytelling
======================================================================*/
#graphic {
  padding-top: 60px;
}


#sections {
  position: relative;
  display: inline-block;
  width: 250px;
  top: 0px;
  z-index: 90;
  padding-bottom: 250px;
}

.step {
  margin-bottom: 200px;
  font-family: "TiemposTextWeb-Regular","Georgia";
  font-size: 16px;
  line-height: 23px;
  color: #767678;
}

#sections .title {
  font-family: Arial,Helvetica,"san-serif";
  font-size: 16px;
  font-weight: bold;
  margin-bottom: 2px;
  color: #262626;
  line-height: 1.2em;
}
#extra-space {
  height: 300px;
}

#vis2 {
  display: inline-block;
  position: fixed;
  top: 60px;
  z-index: 1;
  margin-left: 0;
  font-size: 10px;
}
.axis path,
.axis line {
  fill: none;
  stroke: none;
  shape-rendering: crispEdges;
}

path.line {
  fill: none;
  stroke-width: 1px;
  stroke-opacity: 80%;
}

.line.normal {
  stroke: gray;
}

.line.unfocused{
  stroke-opacity: 40%;
}

.line.focused {
  stroke-width: 2px;
  stroke-opacity: 100%;
  stroke: orange;
}

/*======================================================================
    Style for Line Chart
======================================================================*/

svg rect:hover {
    opacity: .3;
}

svg circle:hover {
    opacity: .3;
}

svg g {
    fill: #ACACAC;
}

svg g text.label,
svg g text.ylabel {
    fill: #0099FF;

}

svg {
    background-color: white;
}

.axis path,
.axis line {
    fill: none;
    stroke: #D3D3D3;
    stroke-width: 1px;
}

.line {
    stroke: rgba(0 , 153, 255, 0.75);;
    fill: none;
    stroke-width: 1px;
}

.criticalAreas {
    stroke: red;
    stroke-opacity: 50%;
}

.world {
  stroke: rgba(0,0,0,1);
    stroke-width: 2px;
}

.unfocused {
    stroke-opacity: 25%;
}

.focused {
    stroke-width: 2px;
    stroke-opacity: 100%;
}

.axis text,
.aside {
    font-size: 16px;
    font-weight: bold;
}

.header {
    width: 70%;
    margin-left: 16px;
}

.orange {
    color: #FF9900;
}

.blue {
    color: #0099FF;
}

circle {
    fill: #0099FF;
}


.tooltip {
    position: absolute;
    z-index: 10;
}

.tooltip p {
    background-color: rgba(255, 255, 255, .8);
    padding: .5em 1em;
    font-weight: bold;
    line-height: 17px;
    color: rgba(0, 0, 0, 0.75);
}

text.linelabel {
    font-size: 9pt;
    color: gray;
}

/*======================================================================
    Style for Chart
======================================================================*/
  table {
    margin-left: 50px;
    padding: 30px;
  }
  th {
    cursor: pointer;
  }

th {
  line-height: 20px;
  color: #fff;
  background-color: rgb(0,153,255);
  border-color: rgb(0,153,255);
  font-weight: 400;
  margin: 5px 10px;
  padding: 5px 10px 5px 20px;
}

td {
  padding: 5px 5px 5px 20px;
}

table {
  border-collapse: collapse;
}

tabulate.js

/*
Code by Shawn Allen (@shawnbot) repro'd in d3noob's book,
http://www.d3noob.org/2013/02/add-html-table-to-your-d3js-graph.html,
but with minor modification by Lynn.
*/

function tabulate(data, columns, id) {
    var table = d3.select(id).append("table"),
        thead = table.append("thead"),
        tbody = table.append("tbody");

    // append the header row
    thead.append("tr")
        .selectAll("th")
        .data(columns)
        .enter()
        .append("th")
            .text(function(column) { return column; });

    // create a row for each object in the data
    var rows = tbody.selectAll("tr")
        .data(data)
        .enter()
        .append("tr");

    // create a cell in each row for each column
    // At this point, the rows have data associated.
    // So the data function accesses it.
    var cells = rows.selectAll("td")
        .data(function(row) {
            // he does it this way to guarantee you only use the
            // values for the columns you provide.
            return columns.map(function(column) {
                // return a new object with a value set to the row's column value.
                return {value: row[column]};
            });
        })
        .enter()
        .append("td")
        .text(function(d) { return d.value; });
    return table;
}

// render the table
// var peopleTable = tabulate(data, ["date", "close"]);

tooltip.js

//tooltip based in an example from Roger Veciana: http://bl.ocks.org/rveciana/5181105

d3.helper = {};

d3.helper.tooltip = function(accessor){
    return function(selection){
        var tooltipDiv;
        var bodyNode = d3.select('body').node();
        selection.on("mouseover", function(d, i){
            // Clean up lost tooltips
            d3.select('body').selectAll('div.tooltip').remove();
            // Append tooltip
            tooltipDiv = d3.select('body').append('div').attr('class', 'tooltip');
            var absoluteMousePos = d3.mouse(bodyNode);
            tooltipDiv.style('left', (absoluteMousePos[0] + 10)+'px')
                .style('top', (absoluteMousePos[1] - 15)+'px')
                .style('position', 'absolute')
                .style('z-index', 1001)
                .style('border-radius', '2px')
                .style('color', '#0099FF')
                .style('padding', '10px 15px')
                .style('background', 'rgba(255, 255, 255, 0.7)');
            // Add text using the accessor function
            var tooltipText = accessor(d, i) || '';
            // Crop text arbitrarily
            //tooltipDiv.style('width', function(d, i){return (tooltipText.length > 80) ? '300px' : null;})
            //    .html(tooltipText);
        })
        .on('mousemove', function(d, i) {
            // Move tooltip
            var absoluteMousePos = d3.mouse(bodyNode);
            tooltipDiv.style('left', (absoluteMousePos[0] + 10)+'px')
                .style('top', (absoluteMousePos[1] - 15)+'px');
            var tooltipText = accessor(d, i) || '';
            tooltipDiv.html(tooltipText);
        })
        .on("mouseout", function(d, i){
            // Remove tooltip
            tooltipDiv.remove();
        });

    };
};

underFiveMortalityRegion.csv