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@michaelmhoffman
michaelmhoffman / auto-insert-python.el
Last active August 25, 2020 14:47
Template for Python scripts
(defun new-copyright ()
"Generate new copyright string."
(format-time-string "Copyright %Y Michael M. Hoffman <michael.hoffman@utoronto.ca>"))
(define-auto-insert 'python-mode
`(
"Description: "
"#!/usr/bin/env python3.6" \n
"\"\"\"" (setq basename (buffer-file-basename)) ": " str \n
"\"\"\"" \n \n
@nathanhaigh
nathanhaigh / interleave_fastq.sh
Last active March 28, 2022 09:11
Interleave reads from 2 FASTQ files and output to STDOUT.
#!/bin/bash
# Usage: interleave_fastq.sh f.fastq r.fastq > interleaved.fastq
#
# Interleaves the reads of two FASTQ files specified on the
# command line and outputs a single FASTQ file of STDOUT.
#
# Can interleave 100 million paired reads (200 million total
# reads; a 2 x 22Gbyte files), in memory (/dev/shm), in 6m54s (414s)
#
# Latest code: https://gist.github.com/4544979