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June 9, 2021 07:46
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Easy code for installing packages in R (if not installed) and calling their libraries
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packages_needed <- c("raster", "FNN", "RColorBrewer", "colorRamps", "adehabitatLT", | |
"data.table", "tidyverse", "fields", "ggplot2", "hexbin", | |
"rgdal", "tmap", "gstat", "sp", "maptools", "sf", "fasterize", | |
"fansi", "raster", "tmap", "gstat", "ContourFunctions","ash" | |
) | |
for (i in 1:length(packages_needed)){ | |
if(!(packages_needed[i] %in% installed.packages())){install.packages(packages_needed[i])} | |
} | |
# require(ggplot2)} | |
for (i in 1:length(packages_needed)){ | |
library( packages_needed[i], character.only = TRUE) | |
} | |
# bioconductor packages | |
bioc_packages_needed <- "karyoploteR" | |
if(length(bioc_packages_needed)>0){ | |
if (!requireNamespace("BiocManager", quietly = TRUE)) | |
install.packages("BiocManager") | |
for (i in 1:length(packages_needed)){ | |
if(!(bioc_packages_needed[i] %in% installed.packages())){BiocManager::install(packages_needed[i]) | |
} | |
} | |
} | |
for (i in 1:length(bioc_packages_needed)){ | |
library(bioc_packages_needed[i], character.only = TRUE) | |
} |
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