Created
October 26, 2017 22:51
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Interactive visualization to show the effect of covariate estimates on the response distribution in quantile regression
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library(shiny) | |
library(shinythemes) | |
library(shinysense) | |
library(tidyverse) | |
ui <- fluidPage( | |
theme = shinytheme("flatly"), | |
fluidRow( | |
column(width = 5, | |
h4("Drawn coefficients"), shinydrawrUI("outbreak_stats")), | |
column(width = 5, offset = 1, | |
h4("Smoothed drawn coefficients"), plotOutput(outputId = "effect")) | |
), | |
fluidRow( | |
column(width = 5, | |
h4("Baseline distribution"), plotOutput(outputId = "hist")), | |
column(width = 5, offset = 1, | |
h4("baseline + effect distribution"), plotOutput(outputId = "hist_effect")) | |
) | |
) | |
server <- function(input, output) { | |
random_data <- data_frame(time = 1:99 / 100, | |
metric = NA) | |
#server side call of the drawr module | |
drawChart <- callModule( | |
shinydrawr, | |
"outbreak_stats", | |
data = random_data, | |
draw_start = 1 / 100, | |
x_key = "time", | |
y_key = "metric", | |
y_max = 1, | |
y_min = -1 | |
) | |
observeEvent(drawChart(), { | |
drawnValues = drawChart() | |
baseline <- qnorm(p = 1:99 / 100) | |
smoothed_effect <- loess(y ~ x, data.frame(y = drawnValues, x = 1:98)) %>% | |
predict() %>% c(2 * .[1] - .[2], .) | |
baseline_effect <- sort(baseline + smoothed_effect) | |
dd <- 1 / ((lead(baseline) - baseline) * 100) | |
output$hist <- renderPlot({ | |
plot(baseline, dd, type = "l", xlim = c(-3, 3), ylim = c(0, 1)) | |
}) | |
dde <- 1 / ((lead(baseline_effect) - baseline_effect) * 100) | |
output$hist_effect <- renderPlot({ | |
plot(baseline_effect, dde, type = "l", xlim = c(-3, 3), ylim = c(0, 1)) | |
}) | |
drawnValues | |
output$effect <- renderPlot({ | |
smoothed_effect %>% plot(ylim = c(-1, 1), x = 1:99 / 100) | |
}) | |
}) | |
} | |
# Run the application | |
shinyApp(ui = ui, server = server) |
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