Skip to content

Instantly share code, notes, and snippets.

Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save Erechtheus/689106817d3c3ebbb7861f16d3037de4 to your computer and use it in GitHub Desktop.
Save Erechtheus/689106817d3c3ebbb7861f16d3037de4 to your computer and use it in GitHub Desktop.
<?xml version="1.0" encoding="UTF-8"?>
<ns0:componentMetadataRecord xmlns:ns0="http://www.meta-share.org/OMTD-SHARE_XMLSchema">
<ns0:metadataHeaderInfo>
<ns0:metadataRecordIdentifier metadataIdentifierSchemeName="OMTD">61a5193e-beab-4b79-9116-b794739260b5</ns0:metadataRecordIdentifier>
<ns0:metadataCreationDate>2018-04-20Z</ns0:metadataCreationDate>
<ns0:metadataCreators>
<ns0:metadataCreator>
<ns0:surname>Thomas</ns0:surname>
<ns0:givenName>Philippe</ns0:givenName>
<ns0:personIdentifiers>
<ns0:personIdentifier personIdentifierSchemeName="other">0931731033754918@openminted.eu</ns0:personIdentifier>
</ns0:personIdentifiers>
<ns0:communicationInfo>
<ns0:emails>
<ns0:email>thomas@informatik.hu-berlin.de</ns0:email>
</ns0:emails>
</ns0:communicationInfo>
<ns0:affiliation>
<ns0:position>member</ns0:position>
<ns0:affiliatedOrganization>
<ns0:organizationNames>
<ns0:organizationName lang="en">German Research Center for Artificial Intelligence</ns0:organizationName>
</ns0:organizationNames>
</ns0:affiliatedOrganization>
</ns0:affiliation>
</ns0:metadataCreator>
</ns0:metadataCreators>
<ns0:metadataLastDateUpdated>2018-04-20Z</ns0:metadataLastDateUpdated>
</ns0:metadataHeaderInfo>
<ns0:componentInfo>
<ns0:resourceType>component</ns0:resourceType>
<ns0:identificationInfo>
<ns0:resourceNames>
<ns0:resourceName lang="en">SNP Extraction Tool for Human Variations</ns0:resourceName>
</ns0:resourceNames>
<ns0:descriptions>
<ns0:description lang="en">SETH is a software that performs named entity recognition (NER) of genetic variants (with an emphasis on single nucleotide polymorphisms (SNPs) and other short sequence variations) from natural language texts. SETH allows to recognize the following mutation subtypes: substitution, deletion, insertion, duplication, insertion-deletion (insdel), inversion, conversion, translocation, frameshift, short-sequence repeat, and literal dbSNP mention.</ns0:description>
</ns0:descriptions>
<ns0:resourceShortName>SETH</ns0:resourceShortName>
<ns0:resourceIdentifiers>
<ns0:resourceIdentifier resourceIdentifierSchemeName="OMTD">e0f89b46-b5a0-4860-c0c0-e1130804fccb</ns0:resourceIdentifier>
</ns0:resourceIdentifiers>
<ns0:public>false</ns0:public>
</ns0:identificationInfo>
<ns0:versionInfo>
<ns0:version>0.2.1</ns0:version>
</ns0:versionInfo>
<ns0:contactInfo>
<ns0:contactPoint>thomas@informatik.hu-berlin.de</ns0:contactPoint>
<ns0:contactType>contactEmail</ns0:contactType>
</ns0:contactInfo>
<ns0:resourceDocumentations>
<ns0:resourceDocumentationInfo>
<ns0:documentationDescription>https://github.com/Erechtheus/fimda</ns0:documentationDescription>
<ns0:documentationType>onLineHelpURL</ns0:documentationType>
</ns0:resourceDocumentationInfo>
</ns0:resourceDocumentations>
<ns0:application>false</ns0:application>
<ns0:functionInfo>
<ns0:function>http://w3id.org/meta-share/omtd-share/NamedEntitityRecognizer</ns0:function>
</ns0:functionInfo>
<ns0:distributionInfos>
<ns0:componentDistributionInfo>
<ns0:componentDistributionForm>dockerImage</ns0:componentDistributionForm>
<ns0:distributionLocation>erechtheus/fimda:0.2.1</ns0:distributionLocation>
<ns0:command>de.dfki.lt.fimda.fimda.FIMDA </ns0:command>
</ns0:componentDistributionInfo>
</ns0:distributionInfos>
<ns0:rightsInfo>
<ns0:licenceInfos>
<ns0:licenceInfo>
<ns0:licence>Apache-2.0</ns0:licence>
</ns0:licenceInfo>
</ns0:licenceInfos>
<ns0:rightsStatement>openAccess</ns0:rightsStatement>
</ns0:rightsInfo>
<ns0:inputContentResourceInfo>
<ns0:processingResourceType>document</ns0:processingResourceType>
<ns0:dataFormats>
<ns0:dataFormatInfo>
<ns0:dataFormat>http://w3id.org/meta-share/omtd-share/Xmi</ns0:dataFormat>
</ns0:dataFormatInfo>
</ns0:dataFormats>
<ns0:characterEncodings>
<ns0:characterEncoding>UTF-8</ns0:characterEncoding>
</ns0:characterEncodings>
<ns0:languages>
<ns0:language>en</ns0:language>
</ns0:languages>
</ns0:inputContentResourceInfo>
<ns0:outputResourceInfo>
<ns0:processingResourceType>document</ns0:processingResourceType>
<ns0:dataFormats>
<ns0:dataFormatInfo>
<ns0:dataFormat>http://w3id.org/meta-share/omtd-share/Xmi</ns0:dataFormat>
</ns0:dataFormatInfo>
</ns0:dataFormats>
<ns0:characterEncodings>
<ns0:characterEncoding>UTF-8</ns0:characterEncoding>
</ns0:characterEncodings>
<ns0:languages>
<ns0:language>en</ns0:language>
</ns0:languages>
<ns0:annotationTypes>
<ns0:annotationTypeInfo>
<ns0:annotationType>http://w3id.org/meta-share/omtd-share/BiologicalEnity</ns0:annotationType>
<ns0:annotationTypeOther>Mutation</ns0:annotationTypeOther>
</ns0:annotationTypeInfo>
</ns0:annotationTypes>
</ns0:outputResourceInfo>
<ns0:previousAnnotationTypesPolicy>keep</ns0:previousAnnotationTypesPolicy>
<ns0:componentCreationInfo>
<ns0:framework>UIMA</ns0:framework>
<ns0:TDMMethod>http://w3id.org/meta-share/omtd-share/RuleBasedMethod</ns0:TDMMethod>
</ns0:componentCreationInfo>
<ns0:keywords>
<ns0:keyword>Mutations</ns0:keyword>
<ns0:keyword>Biomedical</ns0:keyword>
</ns0:keywords>
</ns0:componentInfo>
</ns0:componentMetadataRecord>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment