omt-share.xml

<?xml version="1.0" encoding="UTF-8"?>
<ns0:componentMetadataRecord xmlns:ns0="http://www.meta-share.org/OMTD-SHARE_XMLSchema">
  <ns0:metadataHeaderInfo>
    <ns0:metadataRecordIdentifier metadataIdentifierSchemeName="OMTD">ee9520de-85f4-4260-b244-788aed962ee5</ns0:metadataRecordIdentifier>
    <ns0:metadataCreationDate>2018-04-19Z</ns0:metadataCreationDate>
    <ns0:metadataCreators>
      <ns0:metadataCreator>
        <ns0:surname>Thomas</ns0:surname>
        <ns0:givenName>Philippe</ns0:givenName>
        <ns0:personIdentifiers>
          <ns0:personIdentifier personIdentifierSchemeName="other">0931731033754918@openminted.eu</ns0:personIdentifier>
        </ns0:personIdentifiers>
        <ns0:communicationInfo>
          <ns0:emails>
            <ns0:email>thomas@informatik.hu-berlin.de</ns0:email>
          </ns0:emails>
        </ns0:communicationInfo>
        <ns0:affiliation>
          <ns0:position>member</ns0:position>
          <ns0:affiliatedOrganization>
            <ns0:organizationNames>
              <ns0:organizationName>German Research Center for Artificial Intelligence</ns0:organizationName>
            </ns0:organizationNames>
          </ns0:affiliatedOrganization>
        </ns0:affiliation>
      </ns0:metadataCreator>
    </ns0:metadataCreators>
    <ns0:metadataLastDateUpdated>2018-04-19Z</ns0:metadataLastDateUpdated>
  </ns0:metadataHeaderInfo>
  <ns0:componentInfo>
    <ns0:resourceType>component</ns0:resourceType>
    <ns0:identificationInfo>
      <ns0:resourceNames>
        <ns0:resourceName lang="en">SNP Extraction Tool for Human Variations</ns0:resourceName>
      </ns0:resourceNames>
      <ns0:descriptions>
        <ns0:description lang="en">SETH is a software that performs named entity recognition (NER) of genetic variants (with an emphasis on single nucleotide polymorphisms (SNPs) and other short sequence variations) from natural language texts. SETH allows to recognize the following mutation subtypes: substitution, deletion, insertion, duplication, insertion-deletion (insdel), inversion, conversion, translocation, frameshift, short-sequence repeat, and literal dbSNP mention. </ns0:description>
      </ns0:descriptions>
      <ns0:resourceShortName>SETH</ns0:resourceShortName>
      <ns0:resourceIdentifiers>
        <ns0:resourceIdentifier resourceIdentifierSchemeName="OMTD">222e755d-6a01-35e8-58ce-daee0a62ceec</ns0:resourceIdentifier>
      </ns0:resourceIdentifiers>
      <ns0:public>true</ns0:public>
    </ns0:identificationInfo>
    <ns0:versionInfo>
      <ns0:version>0.2.0</ns0:version>
    </ns0:versionInfo>
    <ns0:contactInfo>
      <ns0:contactPoint>thomas@informatik.hu-berlin.de</ns0:contactPoint>
      <ns0:contactType>contactEmail</ns0:contactType>
    </ns0:contactInfo>
    <ns0:resourceDocumentations>
      <ns0:resourceDocumentationInfo>
        <ns0:documentationDescription>https://github.com/Erechtheus/fimda</ns0:documentationDescription>
        <ns0:documentationType>onLineHelpURL</ns0:documentationType>
      </ns0:resourceDocumentationInfo>
    </ns0:resourceDocumentations>
    <ns0:application>false</ns0:application>
    <ns0:functionInfo>
      <ns0:function>http://w3id.org/meta-share/omtd-share/NamedEntitityRecognizer</ns0:function>
    </ns0:functionInfo>
    <ns0:distributionInfos>
      <ns0:componentDistributionInfo>
        <ns0:componentDistributionForm>dockerImage</ns0:componentDistributionForm>
        <ns0:distributionLocation>https://hub.docker.com/r/erechtheus/fimda/</ns0:distributionLocation>
        <ns0:command>docker run de.dfki.lt.fimda.fimda.FIMDA </ns0:command>
      </ns0:componentDistributionInfo>
    </ns0:distributionInfos>
    <ns0:rightsInfo>
      <ns0:licenceInfos>
        <ns0:licenceInfo>
          <ns0:licence>Apache-2.0</ns0:licence>
        </ns0:licenceInfo>
      </ns0:licenceInfos>
      <ns0:rightsStatement>openAccess</ns0:rightsStatement>
    </ns0:rightsInfo>
    <ns0:parameterInfos/>
    <ns0:inputContentResourceInfo>
      <ns0:processingResourceType>document</ns0:processingResourceType>
      <ns0:dataFormats>
        <ns0:dataFormatInfo>
          <ns0:dataFormat>http://w3id.org/meta-share/omtd-share/SerializedCas</ns0:dataFormat>
        </ns0:dataFormatInfo>
      </ns0:dataFormats>
      <ns0:characterEncodings>
        <ns0:characterEncoding>UTF-8</ns0:characterEncoding>
      </ns0:characterEncodings>
      <ns0:languages>
        <ns0:language>en</ns0:language>
      </ns0:languages>
      <ns0:annotationTypes>
        <ns0:annotationTypeInfo>
          <ns0:annotationType>http://w3id.org/meta-share/omtd-share/NamedEntity</ns0:annotationType>
        </ns0:annotationTypeInfo>
      </ns0:annotationTypes>
    </ns0:inputContentResourceInfo>
    <ns0:outputResourceInfo>
      <ns0:processingResourceType>document</ns0:processingResourceType>
      <ns0:dataFormats>
        <ns0:dataFormatInfo>
          <ns0:dataFormat>http://w3id.org/meta-share/omtd-share/SerializedCas</ns0:dataFormat>
        </ns0:dataFormatInfo>
      </ns0:dataFormats>
      <ns0:characterEncodings>
        <ns0:characterEncoding>UTF-8</ns0:characterEncoding>
      </ns0:characterEncodings>
      <ns0:languages>
        <ns0:language>en</ns0:language>
      </ns0:languages>
      <ns0:annotationTypes>
        <ns0:annotationTypeInfo>
          <ns0:annotationType>http://w3id.org/meta-share/omtd-share/NamedEntity</ns0:annotationType>
        </ns0:annotationTypeInfo>
      </ns0:annotationTypes>
    </ns0:outputResourceInfo>
    <ns0:previousAnnotationTypesPolicy>keep</ns0:previousAnnotationTypesPolicy>
    <ns0:componentCreationInfo>
      <ns0:framework>UIMA</ns0:framework>
      <ns0:TDMMethod>http://w3id.org/meta-share/omtd-share/RuleBasedMethod</ns0:TDMMethod>
    </ns0:componentCreationInfo>
    <ns0:keywords>
      <ns0:keyword>Mutations</ns0:keyword>
      <ns0:keyword>Biomedical</ns0:keyword>
    </ns0:keywords>
  </ns0:componentInfo>
</ns0:componentMetadataRecord>