gistfile1.txt

/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/IPython/kernel/__init__.py:13: ShimWarning: The `IPython.kernel` package has been deprecated. You should import from ipykernel or jupyter_client instead.
  "You should import from ipykernel or jupyter_client instead.", ShimWarning)
WARNING:processor:You didn't specify any configuration for MongoDB!
if you attempt to use any of the MongoDB plugins, pax will crash!
WARNING:CheckBounds:[Event 1] Pulse 72 in channel 131 (15926-16027) is partially outside event bounds (0-15999). See issue #43
ERROR:ROOT.TUnixSystem.DispatchSignals:segmentation violation
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/runpy.py", line 170, in _run_module_as_main
ERROR:stack:  "__main__", mod_spec)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/runpy.py", line 85, in _run_code
ERROR:stack:  exec(code, run_globals)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/ipykernel/__main__.py", line 3, in <module>
ERROR:stack:  app.launch_new_instance()
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/traitlets/config/application.py", line 589, in launch_instance
ERROR:stack:  app.start()
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/ipykernel/kernelapp.py", line 405, in start
ERROR:stack:  ioloop.IOLoop.instance().start()
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/zmq/eventloop/ioloop.py", line 162, in start
ERROR:stack:  super(ZMQIOLoop, self).start()
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/tornado/ioloop.py", line 883, in start
ERROR:stack:  handler_func(fd_obj, events)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/tornado/stack_context.py", line 275, in null_wrapper
ERROR:stack:  return fn(*args, **kwargs)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/zmq/eventloop/zmqstream.py", line 440, in _handle_events
ERROR:stack:  self._handle_recv()
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/zmq/eventloop/zmqstream.py", line 472, in _handle_recv
ERROR:stack:  self._run_callback(callback, msg)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/zmq/eventloop/zmqstream.py", line 414, in _run_callback
ERROR:stack:  callback(*args, **kwargs)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/tornado/stack_context.py", line 275, in null_wrapper
ERROR:stack:  return fn(*args, **kwargs)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/ipykernel/kernelbase.py", line 260, in dispatcher
ERROR:stack:  return self.dispatch_shell(stream, msg)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/ipykernel/kernelbase.py", line 212, in dispatch_shell
ERROR:stack:  handler(stream, idents, msg)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/ipykernel/kernelbase.py", line 370, in execute_request
ERROR:stack:  user_expressions, allow_stdin)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/ipykernel/ipkernel.py", line 175, in do_execute
ERROR:stack:  shell.run_cell(code, store_history=store_history, silent=silent)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/IPython/core/interactiveshell.py", line 2723, in run_cell
ERROR:stack:  interactivity=interactivity, compiler=compiler, result=result)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/IPython/core/interactiveshell.py", line 2831, in run_ast_nodes
ERROR:stack:  if self.run_code(code, result):
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/IPython/core/interactiveshell.py", line 2885, in run_code
ERROR:stack:  exec(code_obj, self.user_global_ns, self.user_ns)
ERROR:stack:File "<ipython-input-1-1e74fdba2d5f>", line 18, in <module>
ERROR:stack:  hax.raw_data.inspect_events(81,1)
ERROR:stack:File "/home/hogenbirk/hax/hax/raw_data.py", line 51, in inspect_events
ERROR:stack:  for _ in process_events(dataset_number, event_numbers, config_override=config_dict):
ERROR:stack:File "/home/hogenbirk/hax/hax/raw_data.py", line 106, in process_events
ERROR:stack:  yield mypax.process_event(event)
ERROR:stack:File "/home/hogenbirk/pax/pax/pax/core.py", line 372, in process_event
ERROR:stack:  event = plugin.process_event(event)
ERROR:stack:File "/home/hogenbirk/pax/pax/pax/plugin.py", line 90, in process_event
ERROR:stack:  event = self._process_event(event)
ERROR:stack:File "/home/hogenbirk/pax/pax/pax/plugin.py", line 134, in _process_event
ERROR:stack:  result = self.write_event(event)
ERROR:stack:File "/home/hogenbirk/pax/pax/pax/plugins/io/Plotting.py", line 73, in write_event
ERROR:stack:  self.finalize_plot(event.event_number)
ERROR:stack:File "/home/hogenbirk/pax/pax/pax/plugins/io/Plotting.py", line 89, in finalize_plot
ERROR:stack:  plt.show(block=self.block_view)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/matplotlib/pyplot.py", line 244, in show
ERROR:stack:  return _show(*args, **kw)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/ipykernel/pylab/backend_inline.py", line 36, in show
ERROR:stack:  display(figure_manager.canvas.figure)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/IPython/core/display.py", line 158, in display
ERROR:stack:  format_dict, md_dict = format(obj, include=include, exclude=exclude)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/IPython/core/formatters.py", line 177, in format
ERROR:stack:  data = formatter(obj)
ERROR:stack:File "<decorator-gen-9>", line 2, in __call__
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/IPython/core/formatters.py", line 222, in catch_format_error
ERROR:stack:  r = method(self, *args, **kwargs)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/IPython/core/formatters.py", line 339, in __call__
ERROR:stack:  return printer(obj)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/IPython/core/pylabtools.py", line 226, in <lambda>
ERROR:stack:  png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/IPython/core/pylabtools.py", line 117, in print_figure
ERROR:stack:  fig.canvas.print_figure(bytes_io, **kw)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/matplotlib/backend_bases.py", line 2232, in print_figure
ERROR:stack:  **kwargs)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/matplotlib/backends/backend_agg.py", line 527, in print_png
ERROR:stack:  FigureCanvasAgg.draw(self)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/matplotlib/backends/backend_agg.py", line 469, in draw
ERROR:stack:  self.renderer = self.get_renderer(cleared=True)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/matplotlib/backends/backend_agg.py", line 486, in get_renderer
ERROR:stack:  self.renderer = RendererAgg(w, h, self.figure.dpi)
ERROR:stack:File "/home/hogenbirk/.conda/envs/pax_erik/lib/python3.4/site-packages/matplotlib/backends/backend_agg.py", line 93, in __init__
ERROR:stack:  self._renderer = _RendererAgg(int(width), int(height), dpi, debug=False)