Created
July 10, 2015 16:22
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Catalina out EncounterSetMarkedIndividual seems not to work
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| 10-Jul-2015 12:20:19.157 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.0.24 | |
| 10-Jul-2015 12:20:19.157 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Jul 1 2015 20:19:55 UTC | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.0.24.0 | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 3.13.0-55-generic | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64 | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-7-openjdk-amd64/jre | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.7.0_79-b14 | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /home/joncrall/code/Wildbook/apache-tomcat-8.0.24 | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /home/joncrall/code/Wildbook/apache-tomcat-8.0.24 | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/home/joncrall/code/Wildbook/apache-tomcat-8.0.24/conf/logging.properties | |
| 10-Jul-2015 12:20:19.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager | |
| 10-Jul-2015 12:20:19.159 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.endorsed.dirs=/home/joncrall/code/Wildbook/apache-tomcat-8.0.24/endorsed | |
| 10-Jul-2015 12:20:19.159 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/home/joncrall/code/Wildbook/apache-tomcat-8.0.24 | |
| 10-Jul-2015 12:20:19.159 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/home/joncrall/code/Wildbook/apache-tomcat-8.0.24 | |
| 10-Jul-2015 12:20:19.159 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/home/joncrall/code/Wildbook/apache-tomcat-8.0.24/temp | |
| 10-Jul-2015 12:20:19.159 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/local/cuda-6.0/lib64::/usr/local/cuda/lib64:/usr/local/lib:/usr/local/cuda/lib64:/usr/local/lib:/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib | |
| 10-Jul-2015 12:20:19.234 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"] | |
| 10-Jul-2015 12:20:19.247 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read | |
| 10-Jul-2015 12:20:19.249 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"] | |
| 10-Jul-2015 12:20:19.250 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read | |
| 10-Jul-2015 12:20:19.250 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 418 ms | |
| 10-Jul-2015 12:20:19.267 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Catalina | |
| 10-Jul-2015 12:20:19.268 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.24 | |
| 10-Jul-2015 12:20:19.288 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/ibeis.war | |
| 10-Jul-2015 12:20:22.365 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. | |
| 12:20:22,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy] | |
| 12:20:22,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] | |
| 12:20:22,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/ibeis/WEB-INF/classes/logback.xml] | |
| 12:20:22,509 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - debug attribute not set | |
| 12:20:22,510 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.FileAppender] | |
| 12:20:22,511 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [SUBMISSIONFILE] | |
| 12:20:22,541 |-WARN in ch.qos.logback.core.FileAppender[SUBMISSIONFILE] - This appender no longer admits a layout as a sub-component, set an encoder instead. | |
| 12:20:22,541 |-WARN in ch.qos.logback.core.FileAppender[SUBMISSIONFILE] - To ensure compatibility, wrapping your layout in LayoutWrappingEncoder. | |
| 12:20:22,541 |-WARN in ch.qos.logback.core.FileAppender[SUBMISSIONFILE] - See also http://logback.qos.ch/codes.html#layoutInsteadOfEncoder for details | |
| 12:20:22,541 |-INFO in ch.qos.logback.core.FileAppender[SUBMISSIONFILE] - File property is set to [./webapps/ROOT/logs/encounter-submission.htm] | |
| 12:20:22,544 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.FileAppender] | |
| 12:20:22,544 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [ENCOUNTERDELETEFILE] | |
| 12:20:22,545 |-WARN in ch.qos.logback.core.FileAppender[ENCOUNTERDELETEFILE] - This appender no longer admits a layout as a sub-component, set an encoder instead. | |
| 12:20:22,545 |-WARN in ch.qos.logback.core.FileAppender[ENCOUNTERDELETEFILE] - To ensure compatibility, wrapping your layout in LayoutWrappingEncoder. | |
| 12:20:22,545 |-WARN in ch.qos.logback.core.FileAppender[ENCOUNTERDELETEFILE] - See also http://logback.qos.ch/codes.html#layoutInsteadOfEncoder for details | |
| 12:20:22,545 |-INFO in ch.qos.logback.core.FileAppender[ENCOUNTERDELETEFILE] - File property is set to [./webapps/ROOT/logs/encounter-delete.htm] | |
| 12:20:22,545 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.FileAppender] | |
| 12:20:22,545 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [USERFILE] | |
| 12:20:22,545 |-WARN in ch.qos.logback.core.FileAppender[USERFILE] - This appender no longer admits a layout as a sub-component, set an encoder instead. | |
| 12:20:22,545 |-WARN in ch.qos.logback.core.FileAppender[USERFILE] - To ensure compatibility, wrapping your layout in LayoutWrappingEncoder. | |
| 12:20:22,545 |-WARN in ch.qos.logback.core.FileAppender[USERFILE] - See also http://logback.qos.ch/codes.html#layoutInsteadOfEncoder for details | |
| 12:20:22,545 |-INFO in ch.qos.logback.core.FileAppender[USERFILE] - File property is set to [./webapps/ROOT/logs/user-access.htm] | |
| 12:20:22,546 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.FileAppender] | |
| 12:20:22,546 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [FILE] | |
| 12:20:22,546 |-WARN in ch.qos.logback.core.FileAppender[FILE] - This appender no longer admits a layout as a sub-component, set an encoder instead. | |
| 12:20:22,546 |-WARN in ch.qos.logback.core.FileAppender[FILE] - To ensure compatibility, wrapping your layout in LayoutWrappingEncoder. | |
| 12:20:22,546 |-WARN in ch.qos.logback.core.FileAppender[FILE] - See also http://logback.qos.ch/codes.html#layoutInsteadOfEncoder for details | |
| 12:20:22,546 |-INFO in ch.qos.logback.core.FileAppender[FILE] - File property is set to [./webapps/ROOT/logs/logback-debug.htm] | |
| 12:20:22,546 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.ecocean.servlet.SubmitAction] to INFO | |
| 12:20:22,546 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [SUBMISSIONFILE] to Logger[org.ecocean.servlet.SubmitAction] | |
| 12:20:22,547 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.ecocean.servlet.EncounterDelete] to INFO | |
| 12:20:22,547 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [ENCOUNTERDELETEFILE] to Logger[org.ecocean.servlet.EncounterDelete] | |
| 12:20:22,547 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.apache.jsp.welcome_jsp] to INFO | |
| 12:20:22,547 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [USERFILE] to Logger[org.apache.jsp.welcome_jsp] | |
| 12:20:22,547 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.apache.jsp.logout_jsp] to INFO | |
| 12:20:22,547 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [USERFILE] to Logger[org.apache.jsp.logout_jsp] | |
| 12:20:22,547 |-INFO in ch.qos.logback.classic.joran.action.RootLoggerAction - Setting level of ROOT logger to DEBUG | |
| 12:20:22,547 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [FILE] to Logger[ROOT] | |
| 12:20:22,547 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b8519f4 - Registering current configuration as safe fallback point | |
| 10-Jul-2015 12:20:22.685 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/ibeis.war has finished in 3,397 ms | |
| 10-Jul-2015 12:20:22.686 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/docs | |
| 10-Jul-2015 12:20:22.704 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/docs has finished in 18 ms | |
| 10-Jul-2015 12:20:22.705 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/ROOT | |
| 10-Jul-2015 12:20:22.724 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/ROOT has finished in 19 ms | |
| 10-Jul-2015 12:20:22.725 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/manager | |
| 10-Jul-2015 12:20:22.759 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/manager has finished in 33 ms | |
| 10-Jul-2015 12:20:22.759 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/host-manager | |
| 10-Jul-2015 12:20:22.780 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/host-manager has finished in 21 ms | |
| 10-Jul-2015 12:20:22.780 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/examples | |
| 10-Jul-2015 12:20:22.952 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/examples has finished in 172 ms | |
| 10-Jul-2015 12:20:22.957 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"] | |
| 10-Jul-2015 12:20:22.960 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"] | |
| 10-Jul-2015 12:20:22.961 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 3710 ms | |
| 10-Jul-2015 12:20:32.954 INFO [localhost-startStop-2] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/webapps | |
| 10-Jul-2015 12:20:32.970 INFO [localhost-startStop-2] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/webapps has finished in 16 ms | |
| 10-Jul-2015 12:20:38.243 INFO [http-nio-8080-exec-1] org.datanucleus.store.rdbms.request.FetchRequest.execute Object with id "b101c49c-58d9-4efc-87a1-ba62f6f33a5e" not found ! | |
| javax.jdo.JDOObjectNotFoundException: No such database row | |
| FailedObject:b101c49c-58d9-4efc-87a1-ba62f6f33a5e | |
| at org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:567) | |
| at org.datanucleus.api.jdo.JDOPersistenceManager.getObjectById(JDOPersistenceManager.java:1728) | |
| at org.ecocean.Shepherd.getOccurrence(Shepherd.java:1669) | |
| at org.ecocean.servlet.OccurrenceCreateIBEIS.doPost(OccurrenceCreateIBEIS.java:97) | |
| at org.ecocean.servlet.OccurrenceCreateIBEIS.doGet(OccurrenceCreateIBEIS.java:68) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:622) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ecocean.servlet.StrutsUTF8Filter.doFilter(StrutsUTF8Filter.java:33) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365) | |
| at org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90) | |
| at org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83) | |
| at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362) | |
| at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79) | |
| at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:617) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518) | |
| at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091) | |
| at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:668) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1527) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1484) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) | |
| at java.lang.Thread.run(Thread.java:745) | |
| NestedThrowablesStackTrace: | |
| No such database row | |
| org.datanucleus.exceptions.NucleusObjectNotFoundException: No such database row | |
| at org.datanucleus.store.rdbms.request.FetchRequest.execute(FetchRequest.java:358) | |
| at org.datanucleus.store.rdbms.RDBMSPersistenceHandler.fetchObject(RDBMSPersistenceHandler.java:319) | |
| at org.datanucleus.state.AbstractStateManager.loadFieldsFromDatastore(AbstractStateManager.java:1147) | |
| at org.datanucleus.state.StateManagerImpl.validate(StateManagerImpl.java:4375) | |
| at org.datanucleus.ExecutionContextImpl.findObject(ExecutionContextImpl.java:3544) | |
| at org.datanucleus.api.jdo.JDOPersistenceManager.getObjectById(JDOPersistenceManager.java:1723) | |
| at org.ecocean.Shepherd.getOccurrence(Shepherd.java:1669) | |
| at org.ecocean.servlet.OccurrenceCreateIBEIS.doPost(OccurrenceCreateIBEIS.java:97) | |
| at org.ecocean.servlet.OccurrenceCreateIBEIS.doGet(OccurrenceCreateIBEIS.java:68) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:622) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ecocean.servlet.StrutsUTF8Filter.doFilter(StrutsUTF8Filter.java:33) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365) | |
| at org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90) | |
| at org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83) | |
| at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362) | |
| at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79) | |
| at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:617) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518) | |
| at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091) | |
| at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:668) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1527) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1484) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) | |
| at java.lang.Thread.run(Thread.java:745) | |
| xmlIn( | |
| null | |
| )END | |
| [b037fed5-66c1-4853-8a63-eefb63ce7c42] Exemplars | |
| [7dc9af9a-b9ac-41fa-8ccd-f8db8f9533a6] Unreviewed Images | |
| [4edb71e6-c017-4aa7-8201-c9f8fe0aacdc] All Images | |
| [7e8f1d33-18bb-40ea-9e4e-cf3cf326e9b0] Reviewed Images | |
| [51ec5593-51b7-4384-b0d6-2cd26b61d474] New Encounter 0 | |
| [55555040-2a51-4f1f-9bd6-e2acfc9718cb] New Encounter 1 | |
| [ff7ac356-2302-4180-94b7-c748b3cbbbcf] New Encounter 2 | |
| [350a3341-5d1f-416f-93f9-ad1159932c3e] New Encounter 3 | |
| [02b856d5-9c00-492b-9df1-ca1530650cfd] New Encounter 4 | |
| [a626c327-3ffd-4dfd-834f-db9c0b5febdf] New Encounter 5 | |
| [e08671c7-f2ce-426e-aca2-eb77ae58aa1f] New Encounter 6 | |
| [631d8325-02a1-43f9-8f7c-723bc0226a78] New Encounter 7 | |
| [2bf9e863-38ef-40f4-b043-e65f4c4ac59e] New Encounter 8 | |
| [2cfb369e-1adb-48bd-a4c9-c0e3fcbbf79c] New Encounter 9 | |
| [97b41f88-a328-435f-a284-677f0e6bcb7c] New Encounter 10 | |
| [e4f5aa8a-1390-4a71-86fb-044c274b8e78] New Encounter 11 | |
| [501180a6-4716-4c87-b835-55dfa5283964] New Encounter 12 | |
| [02a13fb5-330b-4022-b644-b8956fc6bbf3] New Encounter 13 | |
| [82446045-be2b-476b-8133-8324f20cf290] New Encounter 14 | |
| [13f5553b-ec03-4557-ba33-f51565a99832] New Encounter 15 | |
| [45da9c64-ad8d-47ba-a357-1a2c17dd8187] New Encounter 16 | |
| [82a79e26-3fd2-4a20-938d-9fb716d75d4f] New Encounter 17 | |
| [204f1c21-f9ea-458e-96ea-be173714d089] New Encounter 18 | |
| [b11217e2-0663-442a-af65-d16bea7c2f1d] New Encounter 19 | |
| [62cb802d-a799-43b8-b049-c0bf8f04d172] New Encounter 20 | |
| [79545e04-5d26-4211-9008-bdb1d29f64c5] New Encounter 21 | |
| [804a5f98-4b7d-46ed-9531-cd8f844d4ef0] New Encounter 22 | |
| [d5388b1a-b1ce-4595-8699-4224cfcc3969] New Encounter 23 | |
| [b101c49c-58d9-4efc-87a1-ba62f6f33a5e] New Encounter 24 | |
| found=62 | |
| IMG ID >>1 | |
| .... aid=1 | |
| (END IMG ID)<<1 | |
| IMG ID >>2 | |
| .... aid=2 | |
| (END IMG ID)<<2 | |
| IMG ID >>3 | |
| .... aid=3 | |
| (END IMG ID)<<3 | |
| IMG ID >>4 | |
| .... aid=4 | |
| (END IMG ID)<<4 | |
| IMG ID >>5 | |
| .... aid=5 | |
| (END IMG ID)<<5 | |
| IMG ID >>6 | |
| .... aid=6 | |
| (END IMG ID)<<6 | |
| IMG ID >>7 | |
| .... aid=7 | |
| (END IMG ID)<<7 | |
| IMG ID >>8 | |
| .... aid=8 | |
| (END IMG ID)<<8 | |
| IMG ID >>9 | |
| .... aid=9 | |
| (END IMG ID)<<9 | |
| IMG ID >>10 | |
| .... aid=10 | |
| (END IMG ID)<<10 | |
| 1: value = 06_410 | |
| 1: value = zebra_plains | |
| 2: value = 06_410 | |
| 2: value = zebra_plains | |
| 3: value = 06_410 | |
| 3: value = zebra_plains | |
| 4: value = 06_410 | |
| 4: value = zebra_plains | |
| 5: value = 07_061 | |
| 5: value = zebra_plains | |
| 6: value = 07_061 | |
| 6: value = zebra_plains | |
| 7: value = 07_061 | |
| 7: value = zebra_plains | |
| 8: value = 07_061 | |
| 8: value = zebra_plains | |
| 9: value = 02_044 | |
| 9: value = zebra_plains | |
| 10: value = 07_091 | |
| 10: value = zebra_plains | |
| ------ | |
| {imgs={1={image_time_posix=1348154981, id=1, image_gps_lon=-1.0, image_uri=51e10019-968b-5f2e-2287-8432464d7547.jpg, image_width=4288, image_height=3216, image_gps_lat=-1.0, image_original_name=Nid-06_410--Cid-1.JPG}, 2={image_time_posix=1272463340, id=2, image_gps_lon=-1.0, image_uri=b19fb0f4-05c1-4841-6973-b0b09d9a51b2.jpg, image_width=2288, image_height=1712, image_gps_lat=-1.0, image_original_name=Nid-06_410--Cid-2.JPG}, 3={image_time_posix=1350569143, id=3, image_gps_lon=-1.0, image_uri=058b4301-8610-f1a1-2fa9-9519854d4930.jpg, image_width=4288, image_height=3216, image_gps_lat=-1.0, image_original_name=Nid-06_410--Cid-3.JPG}, 4={image_time_posix=1150383253, id=4, image_gps_lon=-1.0, image_uri=911ab486-f541-f40f-8cf4-d03d6415b170.jpg, image_width=350, image_height=285, image_gps_lat=-1.0, image_original_name=Nid-06_410--Cid-foal.JPG}, 5={image_time_posix=1272460752, id=5, image_gps_lon=-1.0, image_uri=7588af1c-9093-74dc-932b-816488dda704.jpg, image_width=1256, image_height=888, image_gps_lat=-1.0, image_original_name=Nid-07_061--Cid-1.JPG}, 6={image_time_posix=1311176759, id=6, image_gps_lon=-1.0, image_uri=535fc429-6724-2653-0bf4-4a45bf7785ad.jpg, image_width=1485, image_height=1005, image_gps_lat=-1.0, image_original_name=Nid-07_061--Cid-2.JPG}, 7={image_time_posix=1349275413, id=7, image_gps_lon=-1.0, image_uri=c3883c8e-d7e4-f06a-5422-07994933a5d4.jpg, image_width=4288, image_height=3216, image_gps_lat=-1.0, image_original_name=Nid-07_061--Cid-3.JPG}, 8={image_time_posix=1175511982, id=8, image_gps_lon=-1.0, image_uri=41718ea1-57b5-8bc3-bba0-25801150573b.jpg, image_width=331, image_height=228, image_gps_lat=-1.0, image_original_name=Nid-07_061--Cid-foal.JPG}, 9={image_time_posix=-1, id=9, image_gps_lon=-1.0, image_uri=ff486ff3-3e43-8b4f-743f-7070e47b12cc.jpg, image_width=400, image_height=177, image_gps_lat=-1.0, image_original_name=Nid-02_044--Cid-mom-02_044.jpg}, 10={image_time_posix=1348150279, id=10, image_gps_lon=-1.0, image_uri=faefd7b4-b7a3-33d6-d62b-c320bb024dd6.jpg, image_width=4288, image_height=3216, image_gps_lat=-1.0, image_original_name=Nid-07_091--Cid-1.JPG}}, anns={1={id=1, annot_uuid=c544d25f-fd03-5a2d-6611-cd77430ca251, indivID=06_410, label_8=zebra_plains, label_9=06_410, image_id=1}, 2={id=2, annot_uuid=361cb5a1-9301-9bc6-919c-5d684f1c316b, indivID=06_410, label_8=zebra_plains, label_9=06_410, image_id=2}, 3={id=3, annot_uuid=72845318-508b-18ce-5410-024bec855749, indivID=06_410, label_8=zebra_plains, label_9=06_410, image_id=3}, 4={id=4, annot_uuid=e68b39a8-f61d-0057-5b51-bb3d0c6ef10a, indivID=06_410, label_8=zebra_plains, label_9=06_410, image_id=4}, 5={id=5, annot_uuid=882848d9-0aba-c041-1e0b-007b7762c50e, indivID=06_410, label_8=zebra_plains, label_9=07_061, image_id=5}, 6={id=6, annot_uuid=6256beb1-ae7a-e2e9-6b40-672e601c6f02, indivID=06_410, label_8=zebra_plains, label_9=07_061, image_id=6}, 7={id=7, annot_uuid=e17cc5e0-b878-ac03-286c-e7903fc52994, indivID=06_410, label_8=zebra_plains, label_9=07_061, image_id=7}, 8={id=8, annot_uuid=040de504-9ffc-2ed4-d2c2-73063140bb85, indivID=06_410, label_8=zebra_plains, label_9=07_061, image_id=8}, 9={id=9, annot_uuid=03a17411-c226-c960-d180-9fafef88c880, indivID=06_410, label_8=zebra_plains, label_9=02_044, image_id=9}, 10={id=10, annot_uuid=a8c24041-30ab-3614-5856-f1376fd03cca, indivID=06_410, label_8=zebra_plains, label_9=07_091, image_id=10}}} | |
| - - - - - - | |
| {id=1, annot_uuid=c544d25f-fd03-5a2d-6611-cd77430ca251, indivID=06_410, label_8=zebra_plains, label_9=06_410, image_id=1} | |
| FROM /media/raid/work/PZ_MTEST/_ibsdb/images/51e10019-968b-5f2e-2287-8432464d7547.jpg | |
| /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir/encounters/c/5/c544d25f-fd03-5a2d-6611-cd77430ca251/51e10019-968b-5f2e-2287-8432464d7547.jpg<<<????????????? | |
| Created new Occurrence b101c49c-58d9-4efc-87a1-ba62f6f33a5e | |
| 10-Jul-2015 12:20:38.767 INFO [http-nio-8080-exec-1] org.datanucleus.store.rdbms.request.FetchRequest.execute Object with id "06_410" not found ! | |
| javax.jdo.JDOObjectNotFoundException: No such database row | |
| FailedObject:06_410 | |
| at org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:567) | |
| at org.datanucleus.api.jdo.JDOPersistenceManager.getObjectById(JDOPersistenceManager.java:1728) | |
| at org.ecocean.Shepherd.getMarkedIndividual(Shepherd.java:1658) | |
| at org.ecocean.servlet.OccurrenceCreateIBEIS.doPost(OccurrenceCreateIBEIS.java:223) | |
| at org.ecocean.servlet.OccurrenceCreateIBEIS.doGet(OccurrenceCreateIBEIS.java:68) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:622) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ecocean.servlet.StrutsUTF8Filter.doFilter(StrutsUTF8Filter.java:33) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365) | |
| at org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90) | |
| at org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83) | |
| at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362) | |
| at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79) | |
| at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:617) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518) | |
| at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091) | |
| at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:668) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1527) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1484) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) | |
| at java.lang.Thread.run(Thread.java:745) | |
| NestedThrowablesStackTrace: | |
| No such database row | |
| org.datanucleus.exceptions.NucleusObjectNotFoundException: No such database row | |
| at org.datanucleus.store.rdbms.request.FetchRequest.execute(FetchRequest.java:358) | |
| at org.datanucleus.store.rdbms.RDBMSPersistenceHandler.fetchObject(RDBMSPersistenceHandler.java:319) | |
| at org.datanucleus.state.AbstractStateManager.loadFieldsFromDatastore(AbstractStateManager.java:1147) | |
| at org.datanucleus.state.StateManagerImpl.validate(StateManagerImpl.java:4375) | |
| at org.datanucleus.ExecutionContextImpl.findObject(ExecutionContextImpl.java:3544) | |
| at org.datanucleus.api.jdo.JDOPersistenceManager.getObjectById(JDOPersistenceManager.java:1723) | |
| at org.ecocean.Shepherd.getMarkedIndividual(Shepherd.java:1658) | |
| at org.ecocean.servlet.OccurrenceCreateIBEIS.doPost(OccurrenceCreateIBEIS.java:223) | |
| at org.ecocean.servlet.OccurrenceCreateIBEIS.doGet(OccurrenceCreateIBEIS.java:68) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:622) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ecocean.servlet.StrutsUTF8Filter.doFilter(StrutsUTF8Filter.java:33) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365) | |
| at org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90) | |
| at org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83) | |
| at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362) | |
| at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79) | |
| at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:617) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518) | |
| at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091) | |
| at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:668) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1527) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1484) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) | |
| at java.lang.Thread.run(Thread.java:745) | |
| created new indiv = 06_410 | |
| >>>>>>>>>>>>>>>>> stored encounter: c544d25f-fd03-5a2d-6611-cd77430ca251 | |
| - - - - - - | |
| {id=2, annot_uuid=361cb5a1-9301-9bc6-919c-5d684f1c316b, indivID=06_410, label_8=zebra_plains, label_9=06_410, image_id=2} | |
| FROM /media/raid/work/PZ_MTEST/_ibsdb/images/b19fb0f4-05c1-4841-6973-b0b09d9a51b2.jpg | |
| /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir/encounters/3/6/361cb5a1-9301-9bc6-919c-5d684f1c316b/b19fb0f4-05c1-4841-6973-b0b09d9a51b2.jpg<<<????????????? | |
| existing indiv = 06_410 | |
| You are trying to commit an inactive transaction. | |
| >>>>>>>>>>>>>>>>> stored encounter: 361cb5a1-9301-9bc6-919c-5d684f1c316b | |
| - - - - - - | |
| {id=3, annot_uuid=72845318-508b-18ce-5410-024bec855749, indivID=06_410, label_8=zebra_plains, label_9=06_410, image_id=3} | |
| FROM /media/raid/work/PZ_MTEST/_ibsdb/images/058b4301-8610-f1a1-2fa9-9519854d4930.jpg | |
| /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir/encounters/7/2/72845318-508b-18ce-5410-024bec855749/058b4301-8610-f1a1-2fa9-9519854d4930.jpg<<<????????????? | |
| existing indiv = 06_410 | |
| You are trying to commit an inactive transaction. | |
| >>>>>>>>>>>>>>>>> stored encounter: 72845318-508b-18ce-5410-024bec855749 | |
| - - - - - - | |
| {id=4, annot_uuid=e68b39a8-f61d-0057-5b51-bb3d0c6ef10a, indivID=06_410, label_8=zebra_plains, label_9=06_410, image_id=4} | |
| FROM /media/raid/work/PZ_MTEST/_ibsdb/images/911ab486-f541-f40f-8cf4-d03d6415b170.jpg | |
| /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir/encounters/e/6/e68b39a8-f61d-0057-5b51-bb3d0c6ef10a/911ab486-f541-f40f-8cf4-d03d6415b170.jpg<<<????????????? | |
| existing indiv = 06_410 | |
| You are trying to commit an inactive transaction. | |
| >>>>>>>>>>>>>>>>> stored encounter: e68b39a8-f61d-0057-5b51-bb3d0c6ef10a | |
| - - - - - - | |
| {id=5, annot_uuid=882848d9-0aba-c041-1e0b-007b7762c50e, indivID=06_410, label_8=zebra_plains, label_9=07_061, image_id=5} | |
| FROM /media/raid/work/PZ_MTEST/_ibsdb/images/7588af1c-9093-74dc-932b-816488dda704.jpg | |
| /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir/encounters/8/8/882848d9-0aba-c041-1e0b-007b7762c50e/7588af1c-9093-74dc-932b-816488dda704.jpg<<<????????????? | |
| existing indiv = 06_410 | |
| You are trying to commit an inactive transaction. | |
| >>>>>>>>>>>>>>>>> stored encounter: 882848d9-0aba-c041-1e0b-007b7762c50e | |
| - - - - - - | |
| {id=6, annot_uuid=6256beb1-ae7a-e2e9-6b40-672e601c6f02, indivID=06_410, label_8=zebra_plains, label_9=07_061, image_id=6} | |
| FROM /media/raid/work/PZ_MTEST/_ibsdb/images/535fc429-6724-2653-0bf4-4a45bf7785ad.jpg | |
| /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir/encounters/6/2/6256beb1-ae7a-e2e9-6b40-672e601c6f02/535fc429-6724-2653-0bf4-4a45bf7785ad.jpg<<<????????????? | |
| existing indiv = 06_410 | |
| You are trying to commit an inactive transaction. | |
| >>>>>>>>>>>>>>>>> stored encounter: 6256beb1-ae7a-e2e9-6b40-672e601c6f02 | |
| - - - - - - | |
| {id=7, annot_uuid=e17cc5e0-b878-ac03-286c-e7903fc52994, indivID=06_410, label_8=zebra_plains, label_9=07_061, image_id=7} | |
| FROM /media/raid/work/PZ_MTEST/_ibsdb/images/c3883c8e-d7e4-f06a-5422-07994933a5d4.jpg | |
| /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir/encounters/e/1/e17cc5e0-b878-ac03-286c-e7903fc52994/c3883c8e-d7e4-f06a-5422-07994933a5d4.jpg<<<????????????? | |
| existing indiv = 06_410 | |
| You are trying to commit an inactive transaction. | |
| >>>>>>>>>>>>>>>>> stored encounter: e17cc5e0-b878-ac03-286c-e7903fc52994 | |
| - - - - - - | |
| {id=8, annot_uuid=040de504-9ffc-2ed4-d2c2-73063140bb85, indivID=06_410, label_8=zebra_plains, label_9=07_061, image_id=8} | |
| FROM /media/raid/work/PZ_MTEST/_ibsdb/images/41718ea1-57b5-8bc3-bba0-25801150573b.jpg | |
| /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir/encounters/0/4/040de504-9ffc-2ed4-d2c2-73063140bb85/41718ea1-57b5-8bc3-bba0-25801150573b.jpg<<<????????????? | |
| existing indiv = 06_410 | |
| You are trying to commit an inactive transaction. | |
| >>>>>>>>>>>>>>>>> stored encounter: 040de504-9ffc-2ed4-d2c2-73063140bb85 | |
| - - - - - - | |
| {id=9, annot_uuid=03a17411-c226-c960-d180-9fafef88c880, indivID=06_410, label_8=zebra_plains, label_9=02_044, image_id=9} | |
| FROM /media/raid/work/PZ_MTEST/_ibsdb/images/ff486ff3-3e43-8b4f-743f-7070e47b12cc.jpg | |
| /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir/encounters/0/3/03a17411-c226-c960-d180-9fafef88c880/ff486ff3-3e43-8b4f-743f-7070e47b12cc.jpg<<<????????????? | |
| existing indiv = 06_410 | |
| You are trying to commit an inactive transaction. | |
| >>>>>>>>>>>>>>>>> stored encounter: 03a17411-c226-c960-d180-9fafef88c880 | |
| - - - - - - | |
| {id=10, annot_uuid=a8c24041-30ab-3614-5856-f1376fd03cca, indivID=06_410, label_8=zebra_plains, label_9=07_091, image_id=10} | |
| FROM /media/raid/work/PZ_MTEST/_ibsdb/images/faefd7b4-b7a3-33d6-d62b-c320bb024dd6.jpg | |
| /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir/encounters/a/8/a8c24041-30ab-3614-5856-f1376fd03cca/faefd7b4-b7a3-33d6-d62b-c320bb024dd6.jpg<<<????????????? | |
| existing indiv = 06_410 | |
| You are trying to commit an inactive transaction. | |
| >>>>>>>>>>>>>>>>> stored encounter: a8c24041-30ab-3614-5856-f1376fd03cca | |
| 10-Jul-2015 12:20:40.462 WARNING [http-nio-8080-exec-3] org.datanucleus.metadata.ColumnMetaData.setJdbcType Metadata has jdbc-type of null yet this is not valid. Ignored | |
| reading file??? /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/ibeis/WEB-INF/classes/apiaccess.xml | |
| [class org.ecocean.Encounter] roles for user '': [] | |
| {sex=deny, location=deny} | |
| [class org.ecocean.MarkedIndividual] roles for user '': [] | |
| {} | |
| [class org.ecocean.SinglePhotoVideo] roles for user '': [] | |
| {} | |
| javax.jdo.JDODataStoreException: Iteration request failed : SELECT 'org.ecocean.Keyword' AS NUCLEUS_TYPE,A1.INDEXNAME,A1.READABLENAME,A0.DATACOLLECTIONEVENTID_OID,A0.IDX AS NUCORDER0 FROM SINGLEPHOTOVIDEO_KEYWORDS A0 INNER JOIN KEYWORD A1 ON A0.INDEXNAME_EID = A1.INDEXNAME WHERE A0.IDX >= 0 AND EXISTS (SELECT 'org.ecocean.SinglePhotoVideo' AS NUCLEUS_TYPE,A0_SUB.DATACOLLECTIONEVENTID AS DN_APPID FROM SINGLEPHOTOVIDEO A0_SUB INNER JOIN DATACOLLECTIONEVENT A1_SUB ON A0_SUB.DATACOLLECTIONEVENTID = A1_SUB.DATACOLLECTIONEVENTID WHERE A1_SUB.CORRESPONDINGENCOUNTERNUMBER = 'c544d25f-fd03-5a2d-6611-cd77430ca251' AND A0.DATACOLLECTIONEVENTID_OID = A0_SUB.DATACOLLECTIONEVENTID) ORDER BY NUCORDER0 | |
| at org.datanucleus.api.jdo.NucleusJDOHelper.getJDOExceptionForNucleusException(NucleusJDOHelper.java:546) | |
| at org.datanucleus.api.jdo.JDOQuery.execute(JDOQuery.java:232) | |
| at org.ecocean.Shepherd.getAllSinglePhotoVideosForEncounter(Shepherd.java:1555) | |
| at org.ecocean.Shepherd.getThumbnails(Shepherd.java:2308) | |
| at org.apache.jsp.occurrence_jsp._jspService(occurrence_jsp.java:1032) | |
| at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) | |
| at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:438) | |
| at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:396) | |
| at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:340) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ecocean.servlet.StrutsUTF8Filter.doFilter(StrutsUTF8Filter.java:33) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365) | |
| at org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90) | |
| at org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83) | |
| at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362) | |
| at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79) | |
| at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:617) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518) | |
| at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091) | |
| at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:668) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1527) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1484) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) | |
| at java.lang.Thread.run(Thread.java:745) | |
| NestedThrowablesStackTrace: | |
| java.sql.SQLSyntaxErrorException: Subquery is only allowed to return a single column. | |
| at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source) | |
| at org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source) | |
| at org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown Source) | |
| at org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown Source) | |
| at org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown Source) | |
| at org.apache.derby.impl.jdbc.ConnectionChild.handleException(Unknown Source) | |
| at org.apache.derby.impl.jdbc.EmbedPreparedStatement.<init>(Unknown Source) | |
| at org.apache.derby.impl.jdbc.EmbedPreparedStatement20.<init>(Unknown Source) | |
| at org.apache.derby.impl.jdbc.EmbedPreparedStatement30.<init>(Unknown Source) | |
| at org.apache.derby.impl.jdbc.EmbedPreparedStatement40.<init>(Unknown Source) | |
| at org.apache.derby.jdbc.Driver40.newEmbedPreparedStatement(Unknown Source) | |
| at org.apache.derby.impl.jdbc.EmbedConnection.prepareStatement(Unknown Source) | |
| at org.apache.derby.impl.jdbc.EmbedConnection.prepareStatement(Unknown Source) | |
| at org.apache.commons.dbcp.DelegatingConnection.prepareStatement(DelegatingConnection.java:281) | |
| at org.apache.commons.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.prepareStatement(PoolingDataSource.java:313) | |
| at org.datanucleus.store.rdbms.SQLController.getStatementForQuery(SQLController.java:350) | |
| at org.datanucleus.store.rdbms.SQLController.getStatementForQuery(SQLController.java:295) | |
| at org.datanucleus.store.rdbms.query.JDOQLQuery.performExecute(JDOQLQuery.java:687) | |
| at org.datanucleus.store.query.Query.executeQuery(Query.java:1840) | |
| at org.datanucleus.store.query.Query.executeWithArray(Query.java:1729) | |
| at org.datanucleus.store.query.Query.execute(Query.java:1711) | |
| at org.datanucleus.api.jdo.JDOQuery.execute(JDOQuery.java:223) | |
| at org.ecocean.Shepherd.getAllSinglePhotoVideosForEncounter(Shepherd.java:1555) | |
| at org.ecocean.Shepherd.getThumbnails(Shepherd.java:2308) | |
| at org.apache.jsp.occurrence_jsp._jspService(occurrence_jsp.java:1032) | |
| at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) | |
| at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:438) | |
| at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:396) | |
| at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:340) | |
| at javax.servlet.http.HttpServlet.service(HttpServlet.java:729) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.ecocean.servlet.StrutsUTF8Filter.doFilter(StrutsUTF8Filter.java:33) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365) | |
| at org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90) | |
| at org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83) | |
| at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383) | |
| at org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362) | |
| at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) | |
| at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239) | |
| at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) | |
| at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:219) | |
| at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106) | |
| at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142) | |
| at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79) | |
| at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:617) | |
| at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88) | |
| at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518) | |
| at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091) | |
| at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:668) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1527) | |
| at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1484) | |
| at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) | |
| at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) | |
| at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61) | |
| at java.lang.Thread.run(Thread.java:745) | |
| Caused by: java.sql.SQLException: Subquery is only allowed to return a single column. | |
| at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source) | |
| at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source) | |
| ... 63 more | |
| Caused by: ERROR 42X39: Subquery is only allowed to return a single column. | |
| at org.apache.derby.iapi.error.StandardException.newException(Unknown Source) | |
| at org.apache.derby.impl.sql.compile.SubqueryNode.bindExpression(Unknown Source) | |
| at org.apache.derby.impl.sql.compile.BinaryOperatorNode.bindExpression(Unknown Source) | |
| at org.apache.derby.impl.sql.compile.BinaryLogicalOperatorNode.bindExpression(Unknown Source) | |
| at org.apache.derby.impl.sql.compile.AndNode.bindExpression(Unknown Source) | |
| at org.apache.derby.impl.sql.compile.SelectNode.bindExpressions(Unknown Source) | |
| at org.apache.derby.impl.sql.compile.DMLStatementNode.bindExpressions(Unknown Source) | |
| at org.apache.derby.impl.sql.compile.DMLStatementNode.bind(Unknown Source) | |
| at org.apache.derby.impl.sql.compile.CursorNode.bindStatement(Unknown Source) | |
| at org.apache.derby.impl.sql.GenericStatement.prepMinion(Unknown Source) | |
| at org.apache.derby.impl.sql.GenericStatement.prepare(Unknown Source) | |
| at org.apache.derby.impl.sql.conn.GenericLanguageConnectionContext.prepareInternalStatement(Unknown Source) | |
| ... 57 more | |
| 10-Jul-2015 12:20:42.973 INFO [localhost-startStop-3] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_derby_database | |
| 10-Jul-2015 12:20:42.988 INFO [localhost-startStop-3] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_derby_database has finished in 15 ms | |
| 10-Jul-2015 12:20:42.988 INFO [localhost-startStop-3] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir | |
| 10-Jul-2015 12:20:43.002 INFO [localhost-startStop-3] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /home/joncrall/code/Wildbook/apache-tomcat-8.0.24/webapps/shepherd_data_dir has finished in 14 ms |
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