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@grabear
grabear / SILVA_walkthrough.R
Last active September 18, 2020 13:01
Parsing .biom files with SILVA formatted annotations using phyloseq
# This functionality has been tested and a PR has been pulled with phyloseq here:
# https://github.com/joey711/phyloseq/pull/854
#
# While the function has been vetted, the maintainers are very busy and the PR has not
# yet been added to the main package. Below i've added some detail to explain how to parse
# your silva data. It's quite easy....
source("parse_silva_taxonomy_128")
@kiview
kiview / docker_volume_backup.sh
Last active October 24, 2024 18:36
Docker-Compose volume backup
#!/bin/bash
compose_file_path=$1
project_name=$2
backup_path=$3
function backup_volume {
volume_name=$1
backup_destination=$2
@simonw
simonw / how-to.md
Last active October 20, 2025 13:16
How to create a tarball of a git repository using "git archive"
@postmodern
postmodern / rip_dvd
Last active September 16, 2024 00:09
Script to automate ripping DVDs using Handbrake-CLI and mkvmerge
#!/usr/bin/env bash
#
# Author: postmodern
# Description:
# Rips a DVD to a H.264 MKV file, with chapters and tags. Ignores any
# bad blocks or sectors on the DVD.
# Dependencies:
# * gddrescue
# * handbrake-cli
# * mkvtoolnix