Created
March 22, 2021 08:01
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Diamond 2.0.8 compilation issues. (CentOS release 6.6 (Final)) GCC 10.2.0
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[root@universe bin#]as --version | |
GNU assembler version 2.20.51.0.2-5.42.el6 20100205 | |
Copyright 2009 Free Software Foundation, Inc. | |
This program is free software; you may redistribute it under the terms of | |
the GNU General Public License version 3 or later. | |
This program has absolutely no warranty. | |
This assembler was configured for a target of `x86_64-redhat-linux'. | |
[root@universe bin#]g++ --version | |
g++ (GCC) 10.2.0 | |
Copyright (C) 2020 Free Software Foundation, Inc. | |
This is free software; see the source for copying conditions. There is NO | |
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | |
[root@universe bin#]cmake --version | |
cmake version 2.8.12.2 | |
[root@universe bin#]cmake -DSTATIC_LIBGCC=ON -DSTATIC_LIBSTDC++=ON -DCMAKE_BUILD_MARCH=native -DCMAKE_INSTALL_PREFIX=/softs/bioinfo/diamond-2.0.8 .. | |
-- The C compiler identification is GNU 10.2.0 | |
-- The CXX compiler identification is GNU 10.2.0 | |
-- Check for working C compiler: /softs/gcc/10.2.0/bin/gcc | |
-- Check for working C compiler: /softs/gcc/10.2.0/bin/gcc -- works | |
-- Detecting C compiler ABI info | |
-- Detecting C compiler ABI info - done | |
-- Check for working CXX compiler: /softs/gcc/10.2.0/bin/g++ | |
-- Check for working CXX compiler: /softs/gcc/10.2.0/bin/g++ -- works | |
-- Detecting CXX compiler ABI info | |
-- Detecting CXX compiler ABI info - done | |
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.3") | |
-- Looking for include file pthread.h | |
-- Looking for include file pthread.h - found | |
-- Looking for pthread_create | |
-- Looking for pthread_create - not found | |
-- Looking for pthread_create in pthreads | |
-- Looking for pthread_create in pthreads - not found | |
-- Looking for pthread_create in pthread | |
-- Looking for pthread_create in pthread - found | |
-- Found Threads: TRUE | |
-- Configuring done | |
-- Generating done | |
-- Build files have been written to: /softs/SOURCES/bioinfo/diamond/bin | |
[root@universe bin#]make -j 6 | |
Scanning dependencies of target arch_avx2 | |
Scanning dependencies of target arch_generic | |
Scanning dependencies of target arch_sse4_1 | |
[ 1%] [ 1%] [ 2%] [ 2%] [ 2%] [ 2%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_3frame_swipe.cpp.o | |
Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/swipe.cpp.o | |
Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o | |
Building CXX object CMakeFiles/arch_sse4_1.dir/src/search/stage1.cpp.o | |
Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_swipe.cpp.o | |
Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o | |
[ 3%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/swipe.cpp.o | |
/tmp/ccbLQq4A.s: Assembler messages: | |
/tmp/ccbLQq4A.s:1331: Error: no such instruction: `vinserti128 $0x1,%xmm3,%ymm5,%ymm6' | |
/tmp/ccbLQq4A.s:1423: Error: no such instruction: `vinserti128 $0x1,%xmm1,%ymm7,%ymm4' | |
/tmp/ccbLQq4A.s:1479: Error: no such instruction: `vinserti128 $0x1,%xmm15,%ymm2,%ymm3' | |
/tmp/ccbLQq4A.s:1617: Error: no such instruction: `vinserti128 $0x1,%xmm9,%ymm12,%ymm13' | |
/tmp/ccbLQq4A.s:1722: Error: no such instruction: `vinserti128 $0x1,%xmm6,%ymm10,%ymm11' | |
/tmp/ccbLQq4A.s:1778: Error: no such instruction: `vinserti128 $0x1,%xmm4,%ymm8,%ymm9' | |
/tmp/ccbLQq4A.s:1928: Error: no such instruction: `vinserti128 $0x1,%xmm13,%ymm1,%ymm0' |
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