Created
April 30, 2024 20:34
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zenithPR_gsa for DESeq2
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| # Run code from | |
| # https://diseaseneurogenomics.github.io/zenith/reference/zenithPR_gsa.html | |
| # | |
| # Then run DESeq() and zenithPR_gsa() | |
| # object construction | |
| dds <- DESeqDataSetFromMatrix(geneCounts[keep,], df_metadata, ~ gender) | |
| # standard analysis | |
| dds <- DESeq(dds) | |
| res <- results(dds) | |
| res.gsa2 = zenithPR_gsa(res$stat, rownames(res), gs) | |
| head(res.gsa2) |
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