gistfile1.txt

INFO: Executing provided command
[I 2024-10-02 07:07:48.390 SingleUserLabApp mixins:547] Starting jupyterhub single-user server version 4.0.2
[I 2024-10-02 07:07:48.390 SingleUserLabApp mixins:561] Extending jupyterlab.labhubapp.SingleUserLabApp from jupyterlab 3.4.8
[I 2024-10-02 07:07:48.390 SingleUserLabApp mixins:561] Extending jupyter_server.serverapp.ServerApp from jupyter_server 1.24.0
[W 2024-10-02 07:07:48.456 SingleUserLabApp manager:327] jupyter_server_terminals | error adding extension (enabled: True): Jupyter Server Terminals requires Jupyter Server 2.0+
    Traceback (most recent call last):
      File "/opt/venv/lib/python3.10/site-packages/jupyter_server/extension/manager.py", line 320, in add_extension
        extpkg = ExtensionPackage(name=extension_name, enabled=enabled)
      File "/opt/venv/lib/python3.10/site-packages/jupyter_server/extension/manager.py", line 166, in __init__
        super().__init__(*args, **kwargs)
      File "/opt/venv/lib/python3.10/site-packages/traitlets/traitlets.py", line 1369, in __init__
        value = self._traits[key]._cross_validate(self, getattr(self, key))
      File "/opt/venv/lib/python3.10/site-packages/traitlets/traitlets.py", line 730, in _cross_validate
        value = obj._trait_validators[self.name](obj, proposal)
      File "/opt/venv/lib/python3.10/site-packages/traitlets/traitlets.py", line 1241, in __call__
        return self.func(*args, **kwargs)
      File "/opt/venv/lib/python3.10/site-packages/jupyter_server/extension/manager.py", line 175, in _validate_name
        self._module, self._metadata = get_metadata(name)
      File "/opt/venv/lib/python3.10/site-packages/jupyter_server/extension/utils.py", line 60, in get_metadata
        module = importlib.import_module(package_name)
      File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module
        return _bootstrap._gcd_import(name[level:], package, level)
      File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
      File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
      File "<frozen importlib._bootstrap>", line 1006, in _find_and_load_unlocked
      File "<frozen importlib._bootstrap>", line 688, in _load_unlocked
      File "<frozen importlib._bootstrap_external>", line 883, in exec_module
      File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
      File "/opt/venv/lib/python3.10/site-packages/jupyter_server_terminals/__init__.py", line 13, in <module>
        raise RuntimeError(msg)
    RuntimeError: Jupyter Server Terminals requires Jupyter Server 2.0+
[I 2024-10-02 07:07:48.516 SingleUserLabApp manager:344] jupyter_lsp | extension was successfully linked.
[I 2024-10-02 07:07:48.517 SingleUserLabApp manager:344] jupyter_resource_usage | extension was successfully linked.
[I 2024-10-02 07:07:48.517 SingleUserLabApp manager:344] jupyter_server_proxy | extension was successfully linked.
[I 2024-10-02 07:07:48.520 SingleUserLabApp manager:344] jupyterlab | extension was successfully linked.
[I 2024-10-02 07:07:48.520 SingleUserLabApp manager:344] jupyterlab_jupytext | extension was successfully linked.
[W 2024-10-02 07:07:48.522 NotebookApp] 'extra_template_paths' was found in both NotebookApp and ServerApp. This is likely a recent change. This config will only be set in NotebookApp. Please check if you should also config these traits in ServerApp for your purpose.
[I 2024-10-02 07:07:48.524 SingleUserLabApp manager:344] nbclassic | extension was successfully linked.
[I 2024-10-02 07:07:48.524 SingleUserLabApp manager:344] nbgitpuller | extension was successfully linked.
[I 2024-10-02 07:07:48.708 SingleUserLabApp manager:344] notebook_shim | extension was successfully linked.
[W 2024-10-02 07:07:48.710 RetroApp] 'extra_template_paths' was found in both NotebookApp and ServerApp. This is likely a recent change. This config will only be set in NotebookApp. Please check if you should also config these traits in ServerApp for your purpose.
[I 2024-10-02 07:07:48.712 SingleUserLabApp manager:344] retrolab | extension was successfully linked.
[I 2024-10-02 07:07:48.724 SingleUserLabApp manager:362] notebook_shim | extension was successfully loaded.
[I 2024-10-02 07:07:48.727 SingleUserLabApp manager:362] jupyter_lsp | extension was successfully loaded.
[I 2024-10-02 07:07:48.728 SingleUserLabApp manager:362] jupyter_resource_usage | extension was successfully loaded.
[I 2024-10-02 07:07:48.736 SingleUserLabApp manager:362] jupyter_server_proxy | extension was successfully loaded.
[I 2024-10-02 07:07:48.738 LabApp] JupyterLab extension loaded from /opt/venv/lib/python3.10/site-packages/jupyterlab
[I 2024-10-02 07:07:48.738 LabApp] JupyterLab application directory is /opt/venv/share/jupyter/lab
[I 2024-10-02 07:07:48.740 SingleUserLabApp manager:362] jupyterlab | extension was successfully loaded.
[I 2024-10-02 07:07:48.740 SingleUserLabApp __init__:40] [Jupytext Server Extension] Deriving a JupytextContentsManager from LargeFileManager
[I 2024-10-02 07:07:48.741 SingleUserLabApp manager:362] jupyterlab_jupytext | extension was successfully loaded.
[I 2024-10-02 07:07:48.744 SingleUserLabApp manager:362] nbclassic | extension was successfully loaded.
[I 2024-10-02 07:07:48.745 SingleUserLabApp manager:362] nbgitpuller | extension was successfully loaded.
[I 2024-10-02 07:07:48.747 SingleUserLabApp manager:362] retrolab | extension was successfully loaded.
[I 2024-10-02 07:07:48.749 SingleUserLabApp mixins:635] Starting jupyterhub-singleuser server version 4.0.2
[W 2024-10-02 07:07:48.766 SingleUserLabApp _version:68] jupyterhub version 4.1.5 != jupyterhub-singleuser version 4.0.2. This could cause failure to authenticate and result in redirect loops!
[I 2024-10-02 07:07:48.767 SingleUserLabApp serverapp:2686] Serving notebooks from local directory: /home/rstudio
[I 2024-10-02 07:07:48.767 SingleUserLabApp serverapp:2686] Jupyter Server 1.24.0 is running at:
[I 2024-10-02 07:07:48.767 SingleUserLabApp serverapp:2686] http://jupyter-maryam-2ezeid-40mail-2eutoronto-2eca:8888/user/maryam.zeid@mail.utoronto.ca/rstudio
[I 2024-10-02 07:07:48.767 SingleUserLabApp serverapp:2686]  or http://127.0.0.1:8888/user/maryam.zeid@mail.utoronto.ca/rstudio
[I 2024-10-02 07:07:48.767 SingleUserLabApp serverapp:2687] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[I 2024-10-02 07:07:48.769 SingleUserLabApp mixins:529] Updating Hub with activity every 300 seconds
[I 2024-10-02 07:07:48.983 SingleUserLabApp manager:306] Skipped non-installed server(s): bash-language-server, dockerfile-language-server-nodejs, javascript-typescript-langserver, jedi-language-server, julia-language-server, pyright, python-language-server, python-lsp-server, r-languageserver, sql-language-server, texlab, typescript-language-server, unified-language-server, vscode-css-languageserver-bin, vscode-html-languageserver-bin, vscode-json-languageserver-bin, yaml-language-server
[W 2024-10-02 07:07:49.070 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 12.77ms
[W 2024-10-02 07:07:49.251 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.89ms
[W 2024-10-02 07:07:49.722 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.71ms
[W 2024-10-02 07:07:49.899 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.67ms
[W 2024-10-02 07:07:50.375 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.67ms
[W 2024-10-02 07:07:50.550 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.57ms
[W 2024-10-02 07:07:51.201 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.63ms
[W 2024-10-02 07:07:51.858 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.86ms
[W 2024-10-02 07:07:52.518 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.64ms
[W 2024-10-02 07:07:53.176 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.64ms
[W 2024-10-02 07:07:53.835 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.62ms
[W 2024-10-02 07:07:54.485 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.14) 1.68ms
[I 2024-10-02 07:12:13.240 SingleUserLabApp log:191] 302 GET /user/maryam.zeid@mail.utoronto.ca/rstudio/auth-update-credentials? -> /hub/api/oauth2/authorize?client_id=jupyterhub-user-maryam.zeid%2540mail.utoronto.ca&redirect_uri=%2Fuser%2Fmaryam.zeid%40mail.utoronto.ca%2Foauth_callback&response_type=code&state=[secret] (@10.1.0.15) 1.75ms
[W 2024-10-02 07:12:13.242 SingleUserLabApp log:191] 403 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (@10.1.0.15) 1.30ms
[I 2024-10-02 07:12:13.635 SingleUserLabApp auth:1232] Logged-in user {'kind': 'user', 'name': 'georgiana.elena@utoronto.ca', 'admin': True, 'groups': [], 'session_id': 'becde1627e9e4c5da9d139c53a84fc7d', 'scopes': ['access:servers!server=maryam.zeid@mail.utoronto.ca/', 'read:users:groups!user=georgiana.elena@utoronto.ca', 'read:users:name!user=georgiana.elena@utoronto.ca']}
[I 2024-10-02 07:12:13.636 SingleUserLabApp log:191] 302 GET /user/maryam.zeid@mail.utoronto.ca/oauth_callback?code=[secret]&state=[secret] -> /user/maryam.zeid@mail.utoronto.ca/rstudio/auth-update-credentials? (@10.1.0.15) 69.52ms
[I 2024-10-02 07:12:14.098 SingleUserLabApp log:191] 200 GET /user/maryam.zeid@mail.utoronto.ca/rstudio/auth-update-credentials? (georgiana.elena@utoronto.ca@10.1.0.15) 314.99ms
[I 2024-10-02 07:12:14.099 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (georgiana.elena@utoronto.ca@10.1.0.15) 207.24ms
[I 2024-10-02 07:12:14.361 SingleUserLabApp log:191] 200 GET /user/maryam.zeid@mail.utoronto.ca/rstudio/auth-update-credentials? (georgiana.elena@utoronto.ca@10.1.0.15) 3.07ms
[I 2024-10-02 07:12:14.559 SingleUserLabApp log:191] 302 GET /user/maryam.zeid@mail.utoronto.ca/rstudio/auth-sign-in -> https://r.datatools.utoronto.ca/user/maryam.zeid@mail.utoronto.ca/rstudio/ (georgiana.elena@utoronto.ca@10.1.0.15) 8.07ms
[I 2024-10-02 07:12:14.709 SingleUserLabApp log:191] 200 GET /user/maryam.zeid@mail.utoronto.ca/rstudio/ (georgiana.elena@utoronto.ca@10.1.0.15) 3.12ms
[I 2024-10-02 07:12:14.933 SingleUserLabApp log:191] 200 GET /user/maryam.zeid@mail.utoronto.ca/rstudio/css/icons.css (georgiana.elena@utoronto.ca@10.1.0.15) 4.42ms
[I 2024-10-02 07:12:14.933 SingleUserLabApp log:191] 200 GET /user/maryam.zeid@mail.utoronto.ca/rstudio/js/text.min.js (georgiana.elena@utoronto.ca@10.1.0.15) 3.54ms
[I 2024-10-02 07:12:14.938 SingleUserLabApp log:191] 200 GET /user/maryam.zeid@mail.utoronto.ca/rstudio/rstudio/rstudio.nocache.js (georgiana.elena@utoronto.ca@10.1.0.15) 4.61ms
[I 2024-10-02 07:12:15.115 SingleUserLabApp log:191] 200 GET /user/maryam.zeid@mail.utoronto.ca/rstudio/images/Posit-Product_rst-server-favicon.svg (georgiana.elena@utoronto.ca@10.1.0.15) 3.01ms
[I 2024-10-02 07:12:17.329 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/client_init (georgiana.elena@utoronto.ca@10.1.0.15) 1801.45ms
[I 2024-10-02 07:12:19.185 SingleUserLabApp log:191] 304 GET /user/maryam.zeid@mail.utoronto.ca/rstudio/mathjax/MathJax.js?config=TeX-MML-AM_CHTML (georgiana.elena@utoronto.ca@10.1.0.15) 1144.57ms
[I 2024-10-02 07:12:19.231 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/set_user_state (georgiana.elena@utoronto.ca@10.1.0.15) 1188.70ms
[I 2024-10-02 07:12:19.431 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/set_user_prefs (georgiana.elena@utoronto.ca@10.1.0.15) 54.66ms
[I 2024-10-02 07:12:19.648 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/get_rversion_info (georgiana.elena@utoronto.ca@10.1.0.15) 45.08ms
[I 2024-10-02 07:12:19.670 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/get_rversion_info (georgiana.elena@utoronto.ca@10.1.0.15) 49.05ms
[I 2024-10-02 07:12:19.691 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/get_rversion_info (georgiana.elena@utoronto.ca@10.1.0.15) 68.79ms
[I 2024-10-02 07:12:19.731 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/discover_package_dependencies (georgiana.elena@utoronto.ca@10.1.0.15) 57.57ms
[I 2024-10-02 07:12:20.314 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/meta/get_init_messages (georgiana.elena@utoronto.ca@10.1.0.15) 299.31ms
[I 2024-10-02 07:12:20.332 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/check_for_external_edit (georgiana.elena@utoronto.ca@10.1.0.15) 331.24ms
[I 2024-10-02 07:12:20.333 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/get_project_template_registry (georgiana.elena@utoronto.ca@10.1.0.15) 330.60ms
[I 2024-10-02 07:12:20.340 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/get_environment_state (georgiana.elena@utoronto.ca@10.1.0.15) 245.76ms
[I 2024-10-02 07:12:20.341 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/read_config_json (georgiana.elena@utoronto.ca@10.1.0.15) 167.16ms
[I 2024-10-02 07:12:20.341 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/read_config_json (georgiana.elena@utoronto.ca@10.1.0.15) 163.07ms
[I 2024-10-02 07:12:20.342 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/pandoc_list_extensions (georgiana.elena@utoronto.ca@10.1.0.15) 162.39ms
[I 2024-10-02 07:12:20.353 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (georgiana.elena@utoronto.ca@10.1.0.15) 175.61ms
[I 2024-10-02 07:12:20.357 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/read_config_json (georgiana.elena@utoronto.ca@10.1.0.15) 180.29ms
[I 2024-10-02 07:12:20.362 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/list_files (georgiana.elena@utoronto.ca@10.1.0.15) 155.79ms
[I 2024-10-02 07:12:20.742 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/set_workbench_metrics (georgiana.elena@utoronto.ca@10.1.0.15) 3.47ms
[I 2024-10-02 07:12:20.799 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (georgiana.elena@utoronto.ca@10.1.0.15) 24.14ms
[I 2024-10-02 07:12:21.195 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/set_client_state (georgiana.elena@utoronto.ca@10.1.0.15) 255.28ms
[I 2024-10-02 07:12:21.289 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/pandoc_get_capabilities (georgiana.elena@utoronto.ca@10.1.0.15) 339.20ms
[I 2024-10-02 07:12:21.326 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (georgiana.elena@utoronto.ca@10.1.0.15) 375.44ms
[I 2024-10-02 07:12:21.508 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/modify_document_properties (georgiana.elena@utoronto.ca@10.1.0.15) 431.09ms
[I 2024-10-02 07:12:21.649 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (georgiana.elena@utoronto.ca@10.1.0.15) 24.16ms
[I 2024-10-02 07:12:21.719 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/save_document_diff (georgiana.elena@utoronto.ca@10.1.0.15) 584.52ms
[I 2024-10-02 07:12:21.749 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/discover_package_dependencies (georgiana.elena@utoronto.ca@10.1.0.15) 126.21ms
[I 2024-10-02 07:12:22.059 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/check_for_external_edit (georgiana.elena@utoronto.ca@10.1.0.15) 22.17ms
[I 2024-10-02 07:12:22.060 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/unsatisfied_dependencies (georgiana.elena@utoronto.ca@10.1.0.15) 21.00ms
[I 2024-10-02 07:12:22.063 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (georgiana.elena@utoronto.ca@10.1.0.15) 24.50ms
[I 2024-10-02 07:12:22.339 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/unsatisfied_dependencies (georgiana.elena@utoronto.ca@10.1.0.15) 15.05ms
[I 2024-10-02 07:12:22.376 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/rpc/pandoc_markdown_to_ast (georgiana.elena@utoronto.ca@10.1.0.15) 27.12ms
[I 2024-10-02 07:12:23.955 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (georgiana.elena@utoronto.ca@10.1.0.15) 1629.85ms
[I 2024-10-02 07:12:24.972 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (georgiana.elena@utoronto.ca@10.1.0.15) 222.80ms
[I 2024-10-02 07:12:25.179 SingleUserLabApp log:191] 200 POST /user/maryam.zeid@mail.utoronto.ca/rstudio/events/get_events (georgiana.elena@utoronto.ca@10.1.0.15) 62.79ms