GeraultTr

mkdir Wheat-BRIDGES_framework
cd Wheat-BRIDGES_framework

git clone -b release2025 git@github.com:openalea/Root-CyNAPS.git
git clone -b main git@github.com:openalea/metafspm.git
git clone -b release2025 git@github.com:openalea/fspm-utility.git
git clone -b develop_tristan git@github.com:openalea/rhizodep.git
git clone -b main git@github.com:GeraultTr/RhizoSoil.git
git clone -b munch git@github.com:GeraultTr/Root_BRIDGES.git
git clone --recurse-submodules -b main git@github.com:GeraultTr/Wheat-BRIDGES.git

GeraultTr

import rsml
from openalea.mtg import *

file_path = "inputs\\monocot-sim-4-4-14.rsml"
g = rsml.rsml2mtg(file_path)

def diam(v):
    # d = g.node(v).diam
    return 0.01

GeraultTr

import numpy as np


def turtle_coordinates(g, vid: int, angle_roll: float, angle_down: float):
    """
    Function intended to compute the coordinates of a succession of root segments in the scene referential.
    NOTE : It was designed as a per-vid function, but it should be used from collar to tips for proper functioning.
    :param g: mtg
    :param vid: segment vid
    :param angle_roll: first event, rotation in gradient around the z axis carried by the cylinder orientation

GeraultTr

from dataclasses import dataclass
import inspect

@dataclass
class ParentModel:
  """
  """
    input: float = 0.
    state_variable: float = 0.
    parameter: float = 0. # On a des fields en réalité

GeraultTr

# use : mamba env create -f requirements.yml
name: root_bridges
channels:
  - conda-forge
  - openalea3
dependencies:
  - python>=3.8
  # OpenAlea dependancies
  - openalea.plantgl
  - openalea.mtg

GeraultTr

# Model packages
conda create -n rhizodep python=3.9.18
conda activate rhizodep
conda install -y -c conda-forge mamba

# My dependancies not yet on conda
cd ~/package
git clone https://github.com/GeraultTr/genericmodel.git
git clone https://github.com/GeraultTr/data_utility.git