| """ | |
| Script to convert eman2 segmentation hdf maps to imod model files at a user defined contour level. | |
| Requires python>=3.5 as well as having Eman2 and IMOD in the path. | |
| Usage: `python3 tomoseg_to_imod.py -i EXAMPLE.hdf -o EXAMPLE.mod -t 0.8` | |
| Author: Benjamin Barad <benjamin.barad@gmail.com> | |
| """ | |
| import argparse |
| #!/bin/bash | |
| if [[ ! -d 3DEM ]] | |
| then | |
| mkdir 3DEM | |
| fi | |
| cd 3DEM | |
| curl -s http://mail.ncmir.ucsd.edu/pipermail/3dem/ |\ |
| [ | |
| "FCi27mtaKod38ztmGndn-y8NNz.r.lt6SndqGztz_ztr-ngqQm9aMo9eOnMeJntuNntu", | |
| "D2ei2mgqJz9b-m.mGmPqRyLNNnwmOlt7.ywiGmt-Kndr9otqRywv8o9ePmtiNmd2Sn92Tma", | |
| "6U7vcmPuOn9uLnMaGyM7-nLNNntv9lt6RmtaGmweOyMmJnMmSmgmOo9eOnM6LnMaRmM-Tma", | |
| "lXLf8owyQztiMzwqGnMz7zcNNotb7lwf.m9qGzt6Km.qMngqLndqLo9eOotaNm96Mmt6Tma", | |
| "FCi27y9qOnd-Ny96GmPmOmcNNzwf-lwj-m9mGztz7ytaMnM78n9v-o9ePmM6Rm9-Qn9eTma", | |
| "XlEDumMz7nM7-m9iGogmRmLNNyt_8lwiKz9eGm9-Pm.v7ztiLztz_o9eOnMeQnd-Sodm", | |
| "lXLf8yt-JywmNmPeGm9n9n8NNzgn.lt_8zwqGogz7zgn7zt6SyPr-o9eOnM6Pot2Mn9qTma", | |
| "FCi27zgf8mdqMmMeGnMmMy8NNz9eQlweNy.eGmMiMm96Qmgr9nMb-o9ePmtuRmt6JotmTma", | |
| "FCi27nwmKnMeSodeGm.z.y8NNntz.lt-PywmGy9__ngqQmtiPmtb7o9ePmteJotyJoduTma", |
| import napari | |
| import numpy as np | |
| class MtModel: | |
| def __init__( | |
| self, | |
| npf: int = 13, | |
| start: int = 3, | |
| space: float = 4.0, | |
| radius: float = 9.8, |
| from pathlib import Path | |
| from typing import List, Sequence, Tuple | |
| import einops | |
| import mrcfile | |
| import numpy as np | |
| import torch | |
| import typer | |
| cli = typer.Typer(name='raps_3d', no_args_is_help=True, add_completion=False) |
| ;;; emacs-zotero-bib-fetch.el --- Manage Zotero collections from emacs | |
| ;; | |
| ;; Filename: emacs-zotero-bib-fetch.el | |
| ;; Author: Anders Johansson, based on zotelo by Spinu Vitalie | |
| ;; Maintainer: Anders Johansson | |
| ;; Copyright (C) 2011-2014, Anders Johansson and Spinu Vitalie | |
| ;; Created: 1 Jul 2014 | |
| ;; Version: 1.2 | |
| ;; URL: https://github.com/andersjohansson/emacs-zotero-bib-fetch | |
| ;; Keywords: zotero, emacs, reftex, bibtex, bibliography manager |
| #!/usr/bin/env python | |
| import numpy as np | |
| import pandas as pd | |
| import umap | |
| import sys | |
| import matplotlib.pyplot as plt | |
| import seaborn as sns | |
| from sklearn.preprocessing import StandardScaler | |
| from cryosparc.dataset import Dataset |
| import numpy as np | |
| def sigmoid(x): | |
| return 1 / (1 + np.exp(-x)) | |
| def neural_network(X, y): | |
| learning_rate = 0.1 | |
| W1 = np.random.rand(2, 4) | |
| W2 = np.random.rand(4, 1) |
| This is the list of exit codes for wget: | |
| 0 No problems occurred | |
| 1 Generic error code | |
| 2 Parse error — for instance, when parsing command-line options, the .wgetrc or .netrc… | |
| 3 File I/O error | |
| 4 Network failure | |
| 5 SSL verification failure | |
| 6 Username/password authentication failure | |
| 7 Protocol errors |
If you were to give recommendations to your "little brother/sister" on things that they need to do to become a data scientist, what would those things be?
I think the "Data Science Venn Diagram" (http://drewconway.com/zia/2013/3/26/the-data-science-venn-diagram) is a great place to start. You need three things to be a good data scientist: