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@HojeChun
Created June 16, 2022 08:24
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pair_nequip error
LAMMPS (29 Sep 2021 - Update 2)
Reading data file ...
orthogonal box = (0.0000000 0.0000000 0.0000000) to (35.000000 35.000000 35.000000)
1 by 1 by 1 MPI processor grid
reading atoms ...
489 atoms
read_data CPU = 0.001 seconds
NEQUIP is using device cuda
NequIP Coeff: type 1 is element Pt
Loading model from pt_potential.pth
Freezing TorchScript model...
WARNING: Using 'neigh_modify every 1 delay 0 check yes' setting during minimization (src/lammps/src/min.cpp:188)
Neighbor list info ...
update every 1 steps, delay 0 steps, check yes
max neighbors/atom: 2000, page size: 100000
master list distance cutoff = 7
ghost atom cutoff = 7
binsize = 3.5, bins = 10 10 10
1 neighbor lists, perpetual/occasional/extra = 1 0 0
(1) pair nequip, perpetual
attributes: full, newton off
pair build: full/bin/atomonly
stencil: full/bin/3d
bin: standard
Setting up cg style minimization ...
Unit style : metal
Current step : 0
Per MPI rank memory allocation (min/avg/max) = 4.184 | 4.184 | 4.184 Mbytes
Step Temp E_pair E_mol TotEng Press
0 0 -2503.5989 0 -2503.5989 0
76 0 -2010459.9 0 -2010459.9 0
Loop time of 153.489 on 1 procs for 76 steps with 489 atoms
117.8% CPU use with 1 MPI tasks x no OpenMP threads
Minimization stats:
Stopping criterion = energy tolerance
Energy initial, next-to-last, final =
-2503.59887695312 -2010453.375 -2010459.875
Force two-norm initial, final = 97.727561 65634808.0
Force max component initial, final = 23.158852 44838200.0
Final line search alpha, max atom move = 5.1057694e-13 2.2893351e-05
Iterations, force evaluations = 76 318
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 153.48 | 153.48 | 153.48 | 0.0 |100.00
Neigh | 0.0015349 | 0.0015349 | 0.0015349 | 0.0 | 0.00
Comm | 0.00023675 | 0.00023675 | 0.00023675 | 0.0 | 0.00
Output | 0 | 0 | 0 | 0.0 | 0.00
Modify | 0 | 0 | 0 | 0.0 | 0.00
Other | | 0.002545 | | | 0.00
Nlocal: 489.000 ave 489 max 489 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 0.00000 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 0.00000 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 27926.0 ave 27926 max 27926 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 27926
Ave neighs/atom = 57.108384
Neighbor list builds = 2
Dangerous builds = 0
Setting up Verlet run ...
Unit style : metal
Current step : 76
Time step : 0.001
Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes
Step PotEng KinEng TotEng Temp Volume
76 -2010460 48.760029 -2010411.2 773 42875
corrupted double-linked list
[1] 112200 abort (core dumped) lmp_nequip -in system.in
units metal
dimension 3
boundary f f f
atom_style atomic
# ------------------------ FORCE FIELDS ------------------------------
read_data pt.data
pair_style nequip
pair_coeff * * pt_potential.pth Pt
newton off on
######################################
minimize 1.0e-5 1.0e-5 1000 10000
min_style cg
timestep 0.001
velocity all create 773.00 454883 mom yes rot yes dist gaussian
thermo 500
thermo_style custom step pe ke etotal temp vol
fix 1 all nvt temp 773.00 773.00 1.0
dump 1 all xyz 500 movie.xyz
dump_modify 1 element Pt
run 100000
unfix 1
fix 2 all nvt temp 773.00 303.00 1.0
dump 2 all xyz 500 movie2.xyz
dump_modify 2 element Pt
run 100000
unfix 2
fix 3 all nvt temp 303.00 303.00 1.0
dump 3 all xyz 500 movie3.xyz
dump_modify 3 element Pt
run 100000
unfix 3
write_data output_npc3.data
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