Honchkrow

#!/bin/bash

# Directory containing all sorted files
sorted_files_directory="/home/zw/Data/WGBS_HCC_cfDNA/sorted"

# Name of the final merged bam file
final_bam_file="merged.bam"

# Temporary directory for storing intermediate merged files
temp_directory="/home/zw/Data/WGBS_HCC_cfDNA/temp"